FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0112700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Typical P-type R2R3 Myb protein (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.59 (0.0483) R2 : 0.217
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 2.3 (0.213) R2dE : 0.205 R2E : 0.166
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.489 (0.103) R2dN8 : 0.0514 R2N8 : 0.0124
σ : 0.906
deviance : 378.17
__
_____
C
peak time of C : --
E
wheather : humidity
threshold : 44.85
memory length : 7010
response mode : < th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
382.91 0.919 3.49 0.507 0.242 0.198 0.779 4.39 0.499 16.4 49 4204 -- --
393.21 0.924 3.61 0.734 0.305 1.38 1.16 -- 0.444 16.6 48 8459 -- --
383.62 0.912 3.48 0.525 0.248 0.141 -- 4.45 0.491 14.6 49 4204 -- --
374.21 0.901 3.6 0.191 0.237 2.2 -- -- 0.495 15.5 44 6495 -- --
379.56 0.907 3.53 0.299 -- 1.17 -- 4.39 0.468 -- 47 5010 -- --
449.29 0.994 3.61 0.92 0.081 -- 1.25 -- 0.418 19.2 -- -- -- --
450.5 0.994 3.61 0.902 0.241 -- -- -- 0.425 14.8 -- -- -- --
377.2 0.905 3.59 0.201 -- 2.3 -- -- 0.523 -- 45.1 7163 -- --
374.86 0.902 3.59 -- 0.244 2.3 -- -- 0.491 14.6 45 6477 -- --
453.85 0.995 3.61 0.891 -- -- -- -- 0.419 -- -- -- -- --
471.93 1.02 3.63 -- 0.223 -- -- -- 0.325 14.8 -- -- -- --
378.17 0.906 3.59 -- -- 2.3 -- -- 0.489 -- 44.85 7010 -- --
474.82 1.02 3.63 -- -- -- -- -- 0.32 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 354.06 wind 1 14400 < th dose independent rect. 7 6
3 355.32 wind 1 14400 < th dose dependent rect. 7 6
4 355.41 wind 1 14400 > th dose independent rect. 7 5
6 355.78 wind 1 14400 < th dose dependent rect. 11 2
14 358.39 wind 3 14400 < th dose dependent rect. 7 1
30 360.99 wind 1 14400 < th dose independent rect. 11 2
42 362.05 wind 1 14400 < th dose independent rect. 22 1
43 362.11 wind 1 14400 > th dose independent rect. 11 2
47 362.40 wind 1 14400 < th dose independent rect. 8 1
80 364.39 wind 3 14400 < th dose dependent rect. 22 1
82 364.43 wind 1 14400 < th dose dependent rect. 6 20
94 365.38 wind 1 14400 < th dose independent rect. 5 21
96 365.51 humidity 50 14400 > th dose independent rect. 10 3
98 365.53 wind 1 14400 < th dose dependent rect. 21 16
105 365.75 humidity 50 14400 > th dose independent rect. 20 17
107 365.76 wind 1 14400 < th dose independent rect. 22 4
108 365.77 humidity 50 14400 < th dose independent rect. 11 2
109 365.77 humidity 50 14400 > th dose independent rect. 2 11
113 365.81 humidity 50 14400 > th dose independent rect. 23 14
131 366.04 humidity 50 14400 < th dose dependent rect. 11 1
132 366.05 atmosphere 1015 43200 < th dose independent rect. 23 1
155 366.26 wind 1 14400 > th dose independent rect. 5 21
156 366.27 atmosphere 1015 43200 > th dose independent rect. 23 1
161 366.28 wind 1 14400 < th dose dependent rect. 19 18
180 366.31 wind 1 14400 < th dose independent rect. 5 18
197 366.36 wind 1 14400 < th dose dependent rect. 6 18
217 366.43 humidity 60 14400 < th dose dependent rect. 8 1
219 366.57 humidity 50 14400 > th dose independent sin 8 NA
228 366.70 humidity 50 14400 < th dose independent sin 7 NA
231 366.73 humidity 60 14400 < th dose independent rect. 8 1
232 366.74 wind 1 14400 < th dose dependent rect. 1 1
240 366.89 humidity 50 14400 < th dose independent rect. 13 1
247 366.96 wind 1 14400 > th dose independent rect. 22 4
249 366.99 wind 3 14400 < th dose dependent sin 3 NA
282 367.32 wind 3 14400 < th dose dependent rect. 22 19
291 367.41 wind 3 14400 < th dose dependent rect. 20 20
296 367.50 humidity 60 14400 > th dose independent rect. 8 1
304 367.60 wind 1 14400 < th dose dependent rect. 21 5
312 367.76 wind 1 14400 > th dose independent rect. 5 18
369 368.30 humidity 60 14400 > th dose independent rect. 2 7
377 368.35 humidity 60 14400 > th dose independent rect. 20 13
395 368.53 humidity 60 14400 > th dose independent rect. 23 10
411 368.65 wind 3 14400 < th dose independent rect. 14 18
465 369.09 wind 3 14400 > th dose independent rect. 15 17
468 369.09 wind 3 14400 < th dose dependent rect. 1 16
475 369.22 wind 1 14400 > th dose independent sin 1 NA
484 369.35 wind 1 14400 > th dose independent rect. 22 1
508 369.63 radiation 20 43200 < th dose dependent rect. 16 1
567 369.75 humidity 50 14400 < th dose dependent sin 7 NA
591 369.85 humidity 50 14400 < th dose dependent rect. 14 1
641 370.08 humidity 80 43200 > th dose independent rect. 18 2
649 370.10 radiation 20 43200 < th dose dependent rect. 16 7
679 370.27 atmosphere 1010 14400 > th dose dependent rect. 11 1
680 370.30 radiation 1 43200 > th dose dependent rect. 16 1
688 370.35 wind 1 14400 < th dose independent sin 1 NA
834 370.97 wind 3 14400 < th dose dependent rect. 11 23
845 371.08 wind 3 14400 < th dose dependent no NA NA
851 371.12 humidity 80 43200 < th dose independent rect. 18 1
883 371.19 wind 3 14400 < th dose dependent rect. 24 23
922 371.40 humidity 80 43200 > th dose independent rect. 17 6
935 371.46 wind 1 14400 < th dose independent rect. 24 2
979 371.59 wind 3 14400 < th dose independent rect. 1 15
995 371.67 wind 1 14400 < th dose independent rect. 21 16