Os07g0497500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to MYB transcription factor.
FiT-DB / Search/ Help/ Sample detail
|
Os07g0497500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Similar to MYB transcription factor.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 95.4 | 0.459 | 5.38 | -0.097 | 0.186 | -1.46 | -0.806 | 1.11 | 0.409 | 15.6 | 9.605 | 257 | -- | -- |
| 96.11 | 0.457 | 5.41 | -0.26 | 0.188 | -1.43 | -0.577 | -- | 0.36 | 15.5 | 14.44 | 251 | -- | -- |
| 96.96 | 0.459 | 5.4 | -0.217 | 0.201 | -1.47 | -- | 0.365 | 0.38 | 15.4 | 14.7 | 232 | -- | -- |
| 97.03 | 0.459 | 5.41 | -0.27 | 0.204 | -1.49 | -- | -- | 0.364 | 15.4 | 14.2 | 232 | -- | -- |
| 98.25 | 0.462 | 5.4 | -0.243 | -- | -1.29 | -- | 0.47 | 0.355 | -- | 12.81 | 317 | -- | -- |
| 118.32 | 0.51 | 5.45 | -0.584 | 0.224 | -- | 0.821 | -- | 0.159 | 4.57 | -- | -- | -- | -- |
| 120.02 | 0.513 | 5.45 | -0.588 | 0.235 | -- | -- | -- | 0.154 | 5.23 | -- | -- | -- | -- |
| 98.4 | 0.462 | 5.41 | -0.318 | -- | -1.28 | -- | -- | 0.334 | -- | 13.65 | 306 | -- | -- |
| 98.76 | 0.463 | 5.4 | -- | 0.247 | -1.62 | -- | -- | 0.41 | 15.6 | 12.83 | 232 | -- | -- |
| 122.91 | 0.518 | 5.45 | -0.58 | -- | -- | -- | -- | 0.16 | -- | -- | -- | -- | -- |
| 129.14 | 0.532 | 5.43 | -- | 0.225 | -- | -- | -- | 0.22 | 5.33 | -- | -- | -- | -- |
| 100.86 | 0.468 | 5.4 | -- | -- | -1.39 | -- | -- | 0.382 | -- | 12.89 | 319 | -- | -- |
| 131.79 | 0.536 | 5.44 | -- | -- | -- | -- | -- | 0.225 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 93.64 | temperature | 30 | 270 | < th | dose dependent | rect. | 16 | 20 |
| 4 | 93.91 | temperature | 15 | 270 | > th | dose dependent | rect. | 17 | 23 |
| 6 | 94.11 | temperature | 15 | 270 | > th | dose dependent | rect. | 19 | 23 |
| 11 | 94.58 | temperature | 15 | 30 | > th | dose dependent | rect. | 23 | 23 |
| 14 | 94.94 | temperature | 10 | 270 | > th | dose dependent | sin | 6 | NA |
| 18 | 94.99 | temperature | 30 | 270 | < th | dose dependent | sin | 7 | NA |
| 30 | 95.42 | temperature | 10 | 270 | > th | dose dependent | no | NA | NA |
| 31 | 95.43 | temperature | 15 | 270 | > th | dose dependent | rect. | 4 | 23 |
| 34 | 95.48 | temperature | 30 | 270 | < th | dose dependent | rect. | 21 | 15 |
| 35 | 95.55 | temperature | 15 | 720 | > th | dose dependent | rect. | 19 | 16 |
| 51 | 95.75 | temperature | 30 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 57 | 95.86 | temperature | 15 | 720 | > th | dose dependent | sin | 10 | NA |
| 58 | 95.87 | temperature | 30 | 270 | < th | dose dependent | rect. | 24 | 23 |
| 61 | 95.90 | temperature | 15 | 720 | > th | dose dependent | rect. | 21 | 19 |
| 75 | 96.18 | temperature | 15 | 720 | > th | dose dependent | rect. | 15 | 20 |
| 88 | 96.35 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 17 |
| 96 | 96.47 | temperature | 15 | 90 | > th | dose dependent | rect. | 1 | 23 |
| 99 | 96.51 | temperature | 15 | 720 | > th | dose dependent | rect. | 15 | 18 |
| 115 | 96.62 | temperature | 15 | 720 | > th | dose dependent | rect. | 17 | 16 |
| 170 | 97.01 | temperature | 30 | 270 | < th | dose dependent | rect. | 20 | 23 |
| 175 | 97.06 | temperature | 30 | 270 | < th | dose dependent | no | NA | NA |
| 198 | 97.20 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 23 |
| 211 | 97.28 | temperature | 15 | 720 | > th | dose dependent | rect. | 21 | 10 |
| 226 | 97.34 | temperature | 15 | 720 | > th | dose dependent | rect. | 23 | 4 |
| 227 | 97.34 | temperature | 15 | 720 | > th | dose dependent | rect. | 21 | 8 |
| 245 | 97.42 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 23 |
| 262 | 97.53 | temperature | 30 | 1440 | < th | dose dependent | rect. | 8 | 1 |
| 266 | 97.55 | temperature | 15 | 1440 | > th | dose dependent | rect. | 8 | 1 |
| 271 | 97.56 | temperature | 15 | 270 | > th | dose dependent | rect. | 8 | 23 |
| 327 | 97.83 | temperature | 15 | 720 | > th | dose dependent | rect. | 23 | 6 |
| 353 | 97.89 | temperature | 15 | 270 | > th | dose dependent | rect. | 10 | 23 |
| 511 | 98.47 | temperature | 20 | 30 | > th | dose dependent | rect. | 2 | 20 |
| 603 | 98.76 | temperature | 30 | 30 | < th | dose dependent | rect. | 9 | 23 |
| 709 | 99.01 | temperature | 30 | 30 | < th | dose dependent | rect. | 7 | 23 |
| 714 | 99.03 | temperature | 25 | 4320 | > th | dose dependent | rect. | 7 | 5 |
| 727 | 99.05 | temperature | 30 | 270 | < th | dose dependent | rect. | 3 | 9 |
| 761 | 99.11 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 11 |
| 768 | 99.12 | temperature | 25 | 4320 | > th | dose dependent | rect. | 24 | 12 |
| 803 | 99.19 | temperature | 25 | 720 | < th | dose dependent | rect. | 19 | 10 |
| 807 | 99.20 | temperature | 30 | 14400 | < th | dose independent | rect. | 15 | 1 |
| 848 | 99.26 | temperature | 25 | 720 | < th | dose dependent | rect. | 18 | 12 |
| 875 | 99.31 | temperature | 20 | 4320 | > th | dose dependent | rect. | 10 | 1 |
| 894 | 99.34 | temperature | 25 | 720 | < th | dose dependent | sin | 12 | NA |
| 918 | 99.38 | temperature | 30 | 14400 | > th | dose independent | rect. | 15 | 1 |
| 921 | 99.38 | temperature | 25 | 720 | < th | dose dependent | rect. | 21 | 7 |