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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0732600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Typical P-type R2R3 Myb protein (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.55 (0.223) R2 : 0.324
β1 : -9.81 (0.811) R2dD : 12.6 R2D : -23
β2 : -- (--) R2dC : -- R2C : --
β3 : 544 (50.1) R2dE : 2830 R2E : -2840
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -1950 (180) R2dD*E : 2820 R2D*E : -2810
γ1 : -0.111 (0.0631) R2dN8 : 0.00618 R2N8 : -12.8
σ : 0.553
deviance : 140.89
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_____
C
peak time of C : --
E
wheather : precipitation
threshold : 0.1004
memory length : 233
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 18
open length of G : 0.916

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = precipitation, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
131.18 0.538 5.55 -9.78 0.311 544 -1.29 -1950 -0.096 16.1 0.1024 234 18 0.917
271781.38 24.3 2.63 -9.91 2.38 522 -7.84 -- 4.6 22.6 3.233e-05 75 22 1
135.89 0.543 5.56 -9.79 0.304 544 -- -1950 -0.104 16.3 0.1004 234 18 0.914
242858.52 23 -0.232 15.9 6.28 483 -- -- 10.2 3.87 0.0005348 33 1.15 0.773
140.89 0.553 5.55 -9.81 -- 544 -- -1950 -0.111 -- 0.1004 233 18 0.916
167.49 0.607 3.15 -1.06 0.342 -- -1.18 -- -0.108 16.2 -- -- -- --
171.21 0.613 3.15 -1.07 0.343 -- -- -- -0.114 16.8 -- -- -- --
232631.45 22.5 2.84 15.8 -- 481 -- -- 6.42 -- 4.769e-05 21 1.18 0.767
231896.78 22.4 2.68 -- 6.55 483 -- -- 2.28 14.1 0.01518 32 1.15 0.785
177.43 0.622 3.15 -1.08 -- -- -- -- -0.123 -- -- -- -- --
201.43 0.664 3.13 -- 0.362 -- -- -- 0.00504 16.7 -- -- -- --
230960.7 22.4 3.04 -- -- 481 -- -- 1.6 -- 0.0121 33 23.8 2.08
208.41 0.674 3.12 -- -- -- -- -- -0.0029 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 146.67 precipitation 0.1 270 > th dose independent rect. 18 1
2 146.67 precipitation 0.1 270 > th dose dependent rect. 18 1
3 147.82 temperature 20.0 10 < th dose independent rect. 15 5
15 149.48 precipitation 0.1 270 > th dose dependent rect. 15 4
16 149.55 precipitation 0.1 270 > th dose independent rect. 15 4
36 150.03 atmosphere 1005.0 10 < th dose independent rect. 20 1
47 150.33 atmosphere 1000.0 270 < th dose independent rect. 16 1
49 150.67 atmosphere 1000.0 270 < th dose dependent rect. 16 1
74 152.06 precipitation 0.1 270 > th dose dependent rect. 5 13
75 152.09 precipitation 0.1 270 > th dose dependent rect. 8 10
116 154.76 temperature 25.0 90 < th dose dependent rect. 18 1
123 155.26 atmosphere 1005.0 270 < th dose dependent rect. 10 5
126 155.31 temperature 25.0 10 < th dose dependent rect. 20 1
144 155.63 precipitation 0.1 270 > th dose independent rect. 8 10
146 155.68 precipitation 0.1 270 > th dose dependent rect. 20 22
151 155.71 atmosphere 1005.0 90 < th dose dependent rect. 11 9
152 155.72 precipitation 0.1 270 > th dose dependent sin 20 NA
160 155.84 precipitation 0.1 270 > th dose independent rect. 5 13
172 156.01 atmosphere 1005.0 90 < th dose dependent sin 21 NA
217 156.63 atmosphere 1005.0 90 < th dose dependent rect. 7 11
271 157.02 humidity 90.0 90 < th dose independent rect. 19 1
272 157.03 temperature 20.0 10 < th dose independent sin 21 NA
345 157.48 temperature 20.0 10 > th dose independent sin 21 NA
354 157.52 wind 3.0 10 < th dose independent rect. 19 2
363 157.58 temperature 10.0 90 > th dose dependent rect. 20 23
400 157.83 temperature 25.0 90 < th dose dependent rect. 14 7
407 157.85 temperature 25.0 90 < th dose dependent rect. 10 11
427 157.91 atmosphere 1015.0 720 < th dose independent rect. 16 8
428 157.91 atmosphere 1010.0 90 < th dose dependent rect. 19 1
452 158.01 temperature 20.0 720 > th dose dependent rect. 6 2
474 158.11 atmosphere 1005.0 270 < th dose independent rect. 9 7
492 158.25 wind 5.0 30 < th dose dependent rect. 19 1
494 158.27 humidity 60.0 14400 > th dose independent rect. 20 1
541 158.46 wind 5.0 90 < th dose independent rect. 19 1
563 158.54 atmosphere 995.0 4320 > th dose independent rect. 20 2
571 158.58 atmosphere 1005.0 720 < th dose independent rect. 9 2
606 158.75 atmosphere 1015.0 270 < th dose independent rect. 16 23
609 158.76 atmosphere 1015.0 720 < th dose independent rect. 9 15
630 158.83 temperature 20.0 720 < th dose independent rect. 17 1
646 158.88 precipitation 0.1 90 < th dose independent rect. 19 1
647 158.88 precipitation 0.1 90 < th dose dependent rect. 19 1
657 158.92 precipitation 0.1 270 > th dose dependent rect. 14 18
680 159.04 temperature 25.0 720 < th dose independent rect. 8 1
742 159.20 wind 3.0 10 < th dose independent rect. 11 10
750 159.21 temperature 25.0 10 < th dose dependent rect. 14 7
800 159.31 atmosphere 1000.0 90 > th dose independent rect. 19 1
808 159.33 temperature 30.0 90 < th dose independent rect. 18 2
814 159.35 radiation 40.0 270 > th dose dependent rect. 14 2
848 159.40 temperature 25.0 30 > th dose dependent rect. 16 23
873 159.46 temperature 15.0 1440 > th dose independent rect. 20 1
886 159.49 radiation 40.0 1440 > th dose dependent rect. 11 1
897 159.53 temperature 15.0 90 > th dose independent rect. 20 23
907 159.56 temperature 25.0 30 > th dose dependent rect. 20 23
941 159.68 temperature 30.0 10 < th dose independent rect. 10 10
953 159.72 radiation 20.0 720 < th dose independent rect. 15 15
961 159.74 temperature 25.0 720 > th dose independent rect. 7 1
986 159.81 humidity 60.0 90 > th dose independent rect. 18 2
995 159.83 radiation 10.0 4320 < th dose dependent rect. 20 1