Os03g0296000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Myb, DNA-binding domain containing protein.
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Os03g0296000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Myb, DNA-binding domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 314.25 | 0.833 | 3.8 | 1.26 | 1.04 | 2.51 | 0.252 | 3.84 | 0.0411 | 14.6 | 19.8 | 4904 | -- | -- |
| 326.17 | 0.841 | 3.63 | 1.83 | 0.991 | 1.71 | 0.0723 | -- | 0.277 | 14.5 | 21.1 | 5324 | -- | -- |
| 314.47 | 0.826 | 3.8 | 1.26 | 1.04 | 2.51 | -- | 3.85 | 0.0427 | 14.6 | 19.81 | 4903 | -- | -- |
| 326.05 | 0.841 | 3.63 | 1.8 | 1 | 1.69 | -- | -- | 0.249 | 14.5 | 21 | 5179 | -- | -- |
| 375.07 | 0.902 | 3.82 | 1.33 | -- | 2.82 | -- | 4.33 | 0.0395 | -- | 19.7 | 5238 | -- | -- |
| 375.78 | 0.909 | 3.75 | 0.701 | 1.07 | -- | 0.296 | -- | -0.295 | 14.5 | -- | -- | -- | -- |
| 376.1 | 0.908 | 3.75 | 0.708 | 1.07 | -- | -- | -- | -0.293 | 14.5 | -- | -- | -- | -- |
| 386.42 | 0.916 | 3.63 | 1.76 | -- | 1.71 | -- | -- | 0.226 | -- | 21.05 | 5323 | -- | -- |
| 362.79 | 0.887 | 3.72 | -- | 0.735 | 1.18 | -- | -- | -0.141 | 14.8 | 24.78 | 2487 | -- | -- |
| 444.14 | 0.985 | 3.76 | 0.663 | -- | -- | -- | -- | -0.32 | -- | -- | -- | -- | -- |
| 389.33 | 0.923 | 3.77 | -- | 1.06 | -- | -- | -- | -0.372 | 14.5 | -- | -- | -- | -- |
| 403.93 | 0.936 | 3.72 | -- | -- | 1.29 | -- | -- | -0.0843 | -- | 24.7 | 2566 | -- | -- |
| 455.73 | 0.996 | 3.77 | -- | -- | -- | -- | -- | -0.393 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 298.23 | radiation | 20.0 | 43200 | < th | dose dependent | rect. | 17 | 12 |
| 4 | 298.27 | radiation | 30.0 | 43200 | < th | dose dependent | rect. | 17 | 10 |
| 10 | 298.30 | radiation | 20.0 | 43200 | < th | dose dependent | rect. | 17 | 5 |
| 13 | 298.32 | radiation | 20.0 | 43200 | < th | dose dependent | rect. | 17 | 2 |
| 18 | 298.32 | radiation | 20.0 | 43200 | < th | dose dependent | rect. | 17 | 8 |
| 52 | 298.95 | wind | 1.0 | 43200 | > th | dose independent | rect. | 21 | 2 |
| 69 | 299.26 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 17 | 9 |
| 74 | 299.27 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 17 | 2 |
| 96 | 299.45 | wind | 1.0 | 43200 | < th | dose independent | rect. | 22 | 2 |
| 101 | 299.62 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 17 | 2 |
| 103 | 299.64 | radiation | 1.0 | 43200 | > th | dose dependent | rect. | 17 | 2 |
| 129 | 299.95 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 17 | 2 |
| 134 | 300.14 | humidity | 60.0 | 43200 | > th | dose dependent | rect. | 18 | 1 |
| 149 | 300.41 | wind | 1.0 | 43200 | < th | dose independent | rect. | 20 | 4 |
| 152 | 300.56 | radiation | 1.0 | 43200 | > th | dose independent | rect. | 17 | 2 |
| 307 | 301.98 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 23 | 1 |
| 319 | 302.02 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 20 | 4 |
| 326 | 302.13 | humidity | 50.0 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 347 | 302.29 | radiation | 1.0 | 43200 | < th | dose dependent | sin | 13 | NA |
| 388 | 302.72 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 23 | 2 |
| 390 | 302.72 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 2 | 4 |
| 393 | 302.73 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 4 | 2 |
| 397 | 302.76 | radiation | 1.0 | 43200 | < th | dose independent | sin | 14 | NA |
| 401 | 302.77 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 3 | 4 |
| 403 | 302.78 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 17 | 18 |
| 408 | 302.80 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 17 | 16 |
| 409 | 302.80 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 22 | 8 |
| 434 | 303.02 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 23 | 3 |
| 446 | 303.15 | humidity | 50.0 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 453 | 303.23 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 1 | 6 |
| 468 | 303.26 | humidity | 60.0 | 43200 | > th | dose independent | rect. | 8 | 1 |
| 489 | 303.36 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 23 | 1 |
| 490 | 303.36 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 23 | 1 |
| 501 | 303.45 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 23 | 1 |
| 503 | 303.45 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 23 | 1 |
| 509 | 303.52 | radiation | 1.0 | 43200 | > th | dose independent | rect. | 17 | 18 |
| 534 | 303.58 | radiation | 1.0 | 43200 | > th | dose independent | rect. | 17 | 16 |
| 583 | 303.87 | radiation | 1.0 | 43200 | > th | dose independent | sin | 14 | NA |
| 589 | 303.92 | humidity | 50.0 | 14400 | > th | dose dependent | rect. | 1 | 6 |
| 639 | 304.08 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 23 | 3 |
| 693 | 304.24 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 22 | 5 |
| 694 | 304.25 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 23 | 1 |
| 706 | 304.31 | humidity | 60.0 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 721 | 304.44 | humidity | 60.0 | 43200 | < th | dose independent | rect. | 23 | 10 |
| 730 | 304.46 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 7 | 23 |
| 748 | 304.50 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 2 | 2 |
| 764 | 304.54 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 21 | 3 |
| 784 | 304.65 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 17 | 13 |
| 791 | 304.67 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 1 | 1 |
| 805 | 304.73 | atmosphere | 1010.0 | 43200 | > th | dose dependent | rect. | 19 | 2 |
| 812 | 304.77 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 2 | 2 |
| 852 | 304.87 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 2 | 2 |
| 853 | 304.87 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 2 | 2 |
| 858 | 304.88 | atmosphere | 1010.0 | 43200 | > th | dose dependent | rect. | 15 | 6 |
| 887 | 304.93 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 5 | 1 |
| 890 | 304.93 | humidity | 50.0 | 43200 | > th | dose independent | rect. | 3 | 10 |
| 962 | 305.00 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 21 | 10 |