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Os08g0549000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to MybHv5 (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 12.4 (0.035) R2 : 0.86
β1 : -- (--) R2dD : -- R2D : --
β2 : 2.59 (0.156) R2dC : 0.3 R2C : 0.647
β3 : -1.42 (0.117) R2dE : 0.157 R2E : 0.509
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.887 (0.0731) R2dN8 : 0.0588 R2N8 : 0.0415
σ : 0.652
deviance : 195.86
__
_____
C
peak time of C : 22.5
E
wheather : radiation
threshold : 0.92
memory length : 35
response mode : > th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
173.9 0.62 12.4 0.818 2.56 -1.47 1.83 2.53 0.964 22.4 0.5797 37 -- --
182.64 0.629 12.4 0.614 2.62 -1.53 -0.786 -- 0.946 22.2 0.93 50 -- --
176.85 0.619 12.4 0.781 2.59 -1.47 -- 1.27 1.01 22.3 0.78 38 -- --
183.47 0.631 12.4 0.73 2.59 -1.46 -- -- 0.982 22.4 0.8697 38 -- --
302.58 0.815 12.4 0.829 -- -3 -- 1.29 0.985 -- 0.78 38 -- --
221.39 0.698 12.5 0.569 4.2 -- -1.06 -- 0.904 23 -- -- -- --
226.15 0.704 12.5 0.613 4.2 -- -- -- 0.908 23 -- -- -- --
305.84 0.815 12.4 0.758 -- -3.08 -- -- 0.999 -- 0.8667 38 -- --
195.86 0.652 12.4 -- 2.59 -1.42 -- -- 0.887 22.5 0.92 35 -- --
1325.6 1.7 12.4 0.707 -- -- -- -- 0.939 -- -- -- -- --
236.04 0.719 12.5 -- 4.21 -- -- -- 0.839 23 -- -- -- --
320.67 0.834 12.4 -- -- -3.07 -- -- 0.914 -- 0.8648 37 -- --
1338.78 1.71 12.4 -- -- -- -- -- 0.861 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 172.77 radiation 1 30 > th dose independent rect. 17 23
2 174.38 radiation 1 30 > th dose independent sin 23 NA
3 174.38 radiation 1 30 < th dose dependent no NA NA
4 174.38 radiation 1 30 < th dose dependent rect. 11 21
10 174.38 radiation 1 30 < th dose dependent rect. 13 23
11 174.38 radiation 1 30 < th dose dependent rect. 15 23
12 174.73 radiation 1 30 < th dose dependent rect. 7 23
13 174.89 radiation 1 30 < th dose dependent rect. 17 23
14 174.96 radiation 1 30 < th dose dependent rect. 13 19
22 176.00 radiation 1 30 > th dose independent no NA NA
23 176.00 radiation 1 30 < th dose independent no NA NA
24 176.00 radiation 1 30 > th dose independent rect. 5 14
60 176.00 radiation 1 30 < th dose independent rect. 11 21
85 176.00 radiation 1 30 < th dose independent rect. 13 23
86 176.00 radiation 1 30 < th dose independent rect. 15 23
98 176.27 radiation 1 30 < th dose independent rect. 7 23
103 176.49 radiation 1 30 < th dose independent rect. 17 23
104 176.54 radiation 1 30 < th dose independent rect. 13 19
116 177.00 radiation 1 30 < th dose dependent sin 23 NA
133 177.35 humidity 70 10 > th dose dependent rect. 8 12
144 177.73 radiation 1 90 < th dose dependent rect. 6 13
145 177.81 radiation 1 30 < th dose dependent rect. 15 21
152 178.35 radiation 1 30 < th dose dependent rect. 15 17
160 178.48 radiation 1 90 < th dose independent rect. 6 13
182 179.13 radiation 1 30 < th dose independent rect. 15 21
189 179.63 radiation 1 30 < th dose independent rect. 15 17
197 179.67 humidity 70 10 > th dose dependent rect. 12 8
206 179.88 radiation 1 30 < th dose independent sin 23 NA
212 180.14 radiation 1 30 < th dose dependent rect. 21 23
221 180.43 humidity 80 720 < th dose independent rect. 11 3
232 180.83 radiation 1 30 < th dose independent rect. 21 23
233 180.87 radiation 1 30 < th dose independent rect. 5 23
304 181.05 radiation 1 30 < th dose dependent rect. 5 23
350 182.78 humidity 90 720 < th dose dependent rect. 11 3
355 182.91 radiation 1 720 > th dose independent rect. 10 21
357 183.12 humidity 50 720 > th dose dependent rect. 7 12
394 184.13 radiation 1 10 < th dose dependent rect. 1 23
405 184.27 radiation 1 720 < th dose independent rect. 22 21
417 184.66 humidity 70 720 > th dose independent rect. 14 5
433 184.85 humidity 60 1440 > th dose dependent rect. 11 2
435 184.90 temperature 25 10 > th dose dependent rect. 12 19
454 185.20 humidity 80 30 > th dose independent rect. 7 13
456 185.23 radiation 1 30 > th dose independent rect. 8 23
534 185.60 humidity 60 720 > th dose dependent rect. 11 8
550 185.89 radiation 1 30 < th dose dependent rect. 1 19
551 185.91 radiation 30 720 < th dose independent rect. 14 5
555 186.01 humidity 50 720 > th dose dependent rect. 15 4
559 186.02 radiation 1 30 < th dose independent rect. 1 23
564 186.13 humidity 60 720 > th dose dependent rect. 13 6
572 186.24 humidity 70 1440 > th dose independent rect. 17 23
575 186.25 temperature 25 10 > th dose dependent rect. 12 15
583 186.33 humidity 70 1440 > th dose independent sin 19 NA
591 186.37 humidity 70 1440 > th dose independent rect. 11 10
593 186.37 humidity 70 1440 > th dose independent rect. 11 20
600 186.40 humidity 70 1440 > th dose independent rect. 11 18
605 186.43 humidity 70 1440 > th dose independent rect. 11 16
618 186.47 radiation 1 720 < th dose dependent rect. 22 21
619 186.48 humidity 70 1440 > th dose independent rect. 11 23
638 186.55 humidity 70 1440 > th dose independent rect. 13 21
640 186.55 humidity 50 720 > th dose dependent rect. 7 20
656 186.71 radiation 1 10 < th dose dependent rect. 23 23
667 186.79 humidity 70 1440 > th dose independent rect. 13 8
668 186.79 humidity 70 1440 > th dose independent rect. 13 18
677 186.83 humidity 70 1440 > th dose independent rect. 13 16
691 186.88 radiation 1 720 < th dose dependent rect. 5 14
697 186.91 humidity 70 1440 > th dose independent rect. 3 18
713 186.94 humidity 70 1440 > th dose independent rect. 6 15
742 186.97 humidity 70 1440 > th dose independent no NA NA
756 186.97 humidity 70 1440 > th dose independent rect. 6 23
764 186.98 humidity 60 14400 < th dose dependent rect. 16 1
786 187.04 humidity 50 270 > th dose dependent rect. 22 22
820 187.19 humidity 50 720 > th dose dependent rect. 23 20
834 187.30 radiation 1 30 < th dose independent rect. 1 19
841 187.37 radiation 1 1440 < th dose independent rect. 11 21
899 187.70 radiation 40 720 < th dose dependent rect. 15 4
907 187.74 radiation 1 1440 < th dose independent sin 13 NA
919 187.79 radiation 1 1440 < th dose independent rect. 7 23
924 187.82 radiation 1 30 < th dose independent rect. 23 23
934 187.86 radiation 1 1440 < th dose independent rect. 5 16
950 187.91 radiation 1 1440 < th dose independent rect. 3 18
964 187.95 radiation 10 720 < th dose dependent rect. 15 4
972 187.98 radiation 1 1440 < th dose independent rect. 5 23