Os04g0593200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Transcription repressor MYB4 (Myb-related protein 4) (AtMYB4).
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Os04g0593200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Transcription repressor MYB4 (Myb-related protein 4) (AtMYB4).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 54.22 | 0.346 | 3.18 | 0.212 | 0.238 | -0.25 | 0.348 | 1.58 | 0.018 | 8.91 | 49.72 | 4219 | -- | -- |
| 53.96 | 0.342 | 3.22 | 0.0531 | 0.219 | 0.456 | 0.352 | -- | 0.0432 | 9.53 | 45.26 | 6057 | -- | -- |
| 54.59 | 0.344 | 3.18 | 0.221 | 0.241 | -0.245 | -- | 1.55 | 0.0167 | 8.53 | 49.74 | 4219 | -- | -- |
| 54.16 | 0.343 | 3.22 | 0.0597 | 0.242 | 0.473 | -- | -- | 0.0343 | 8.52 | 45.72 | 5887 | -- | -- |
| 57.8 | 0.354 | 3.19 | 0.238 | -- | -0.296 | -- | 1.64 | 0.0135 | -- | 49.99 | 4221 | -- | -- |
| 57.13 | 0.354 | 3.22 | 0.191 | 0.239 | -- | 0.279 | -- | 0.0181 | 8.85 | -- | -- | -- | -- |
| 57.38 | 0.355 | 3.22 | 0.2 | 0.24 | -- | -- | -- | 0.0178 | 8.6 | -- | -- | -- | -- |
| 57.43 | 0.353 | 3.22 | 0.0612 | -- | 0.473 | -- | -- | 0.0392 | -- | 46 | 5761 | -- | -- |
| 54.24 | 0.343 | 3.22 | -- | 0.242 | 0.501 | -- | -- | 0.0296 | 8.5 | 45.74 | 5834 | -- | -- |
| 60.63 | 0.364 | 3.23 | 0.2 | -- | -- | -- | -- | 0.02 | -- | -- | -- | -- | -- |
| 58.43 | 0.358 | 3.23 | -- | 0.241 | -- | -- | -- | -0.00443 | 8.54 | -- | -- | -- | -- |
| 57.52 | 0.353 | 3.23 | -- | -- | 0.5 | -- | -- | 0.0318 | -- | 45.43 | 5780 | -- | -- |
| 61.69 | 0.367 | 3.23 | -- | -- | -- | -- | -- | -0.00228 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 50.47 | atmosphere | 1010 | 90 | > th | dose independent | rect. | 8 | 1 |
| 2 | 50.47 | atmosphere | 1010 | 10 | > th | dose independent | rect. | 9 | 1 |
| 62 | 51.59 | wind | 1 | 14400 | < th | dose dependent | rect. | 6 | 1 |
| 73 | 51.99 | wind | 1 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 74 | 52.13 | wind | 1 | 14400 | < th | dose dependent | rect. | 4 | 4 |
| 75 | 52.14 | wind | 1 | 14400 | > th | dose independent | rect. | 5 | 2 |
| 81 | 52.29 | wind | 1 | 14400 | < th | dose dependent | rect. | 4 | 7 |
| 83 | 52.35 | humidity | 70 | 14400 | < th | dose independent | rect. | 8 | 1 |
| 88 | 52.47 | humidity | 70 | 14400 | > th | dose independent | rect. | 8 | 1 |
| 104 | 52.52 | wind | 1 | 14400 | < th | dose dependent | rect. | 2 | 9 |
| 105 | 52.53 | wind | 1 | 14400 | < th | dose independent | rect. | 4 | 7 |
| 108 | 52.56 | humidity | 70 | 14400 | > th | dose independent | rect. | 4 | 5 |
| 116 | 52.57 | wind | 1 | 14400 | < th | dose dependent | rect. | 2 | 7 |
| 121 | 52.59 | wind | 1 | 14400 | > th | dose independent | rect. | 4 | 7 |
| 146 | 52.80 | humidity | 80 | 14400 | < th | dose dependent | rect. | 8 | 1 |
| 147 | 52.80 | humidity | 60 | 14400 | < th | dose dependent | rect. | 12 | 1 |
| 160 | 52.90 | humidity | 50 | 14400 | > th | dose independent | rect. | 14 | 2 |
| 166 | 52.92 | wind | 1 | 14400 | < th | dose independent | rect. | 2 | 11 |
| 168 | 52.94 | wind | 1 | 14400 | < th | dose independent | rect. | 2 | 9 |
| 172 | 52.96 | humidity | 60 | 14400 | < th | dose dependent | rect. | 10 | 3 |
| 177 | 52.99 | wind | 1 | 14400 | < th | dose independent | rect. | 2 | 7 |
| 179 | 53.00 | humidity | 50 | 14400 | > th | dose independent | rect. | 13 | 4 |
| 184 | 53.02 | wind | 1 | 14400 | > th | dose independent | rect. | 2 | 11 |
| 188 | 53.03 | humidity | 50 | 14400 | > th | dose independent | rect. | 13 | 22 |
| 205 | 53.04 | wind | 1 | 14400 | > th | dose independent | rect. | 2 | 9 |
| 225 | 53.05 | wind | 1 | 14400 | > th | dose independent | rect. | 2 | 7 |
| 227 | 53.05 | humidity | 50 | 14400 | > th | dose independent | rect. | 13 | 17 |
| 247 | 53.06 | humidity | 60 | 14400 | < th | dose dependent | sin | 6 | NA |
| 294 | 53.13 | humidity | 50 | 14400 | > th | dose independent | sin | 18 | NA |
| 314 | 53.14 | wind | 9 | 14400 | < th | dose dependent | rect. | 5 | 2 |
| 346 | 53.17 | humidity | 60 | 14400 | < th | dose independent | rect. | 10 | 2 |
| 375 | 53.19 | humidity | 50 | 14400 | > th | dose independent | no | NA | NA |
| 376 | 53.19 | wind | 1 | 14400 | > th | dose independent | rect. | 8 | 1 |
| 521 | 53.20 | humidity | 90 | 4320 | < th | dose dependent | rect. | 11 | 1 |
| 523 | 53.21 | humidity | 60 | 14400 | < th | dose independent | rect. | 8 | 4 |
| 570 | 53.23 | wind | 1 | 14400 | < th | dose dependent | sin | 6 | NA |
| 579 | 53.24 | humidity | 50 | 4320 | > th | dose dependent | rect. | 11 | 1 |
| 593 | 53.26 | wind | 1 | 14400 | > th | dose dependent | rect. | 5 | 2 |
| 656 | 53.33 | humidity | 60 | 14400 | < th | dose dependent | rect. | 14 | 1 |
| 669 | 53.36 | wind | 1 | 14400 | > th | dose independent | sin | 6 | NA |
| 683 | 53.37 | wind | 1 | 14400 | < th | dose independent | sin | 6 | NA |
| 702 | 53.38 | wind | 1 | 14400 | < th | dose dependent | rect. | 20 | 14 |
| 729 | 53.41 | wind | 1 | 14400 | < th | dose independent | rect. | 1 | 2 |
| 732 | 53.41 | wind | 1 | 14400 | > th | dose independent | rect. | 21 | 12 |
| 744 | 53.42 | humidity | 60 | 14400 | < th | dose dependent | no | NA | NA |
| 841 | 53.43 | wind | 1 | 14400 | > th | dose independent | rect. | 21 | 14 |
| 868 | 53.44 | humidity | 60 | 14400 | < th | dose dependent | rect. | 14 | 23 |
| 871 | 53.45 | wind | 1 | 14400 | < th | dose independent | rect. | 8 | 1 |
| 888 | 53.46 | wind | 1 | 14400 | > th | dose independent | rect. | 21 | 16 |
| 963 | 53.48 | humidity | 50 | 14400 | < th | dose independent | rect. | 13 | 23 |