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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0388600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Myb-like DNA-binding protein-like [Oryza sativa (japonica cultivar-group)].


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.07 (0.0362) R2 : 0.112
β1 : -0.207 (0.133) R2dD : 0.00514 R2D : 0.00613
β2 : -- (--) R2dC : -- R2C : --
β3 : 4.1 (0.579) R2dE : 0.276 R2E : -0.121
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 10.1 (1.54) R2dD*E : 0.237 R2D*E : -0.181
γ1 : 0.0302 (0.0766) R2dN8 : 0.000403 R2N8 : -0.00256
σ : 0.665
deviance : 204.15
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_____
C
peak time of C : --
E
wheather : radiation
threshold : 56.44
memory length : 95
response mode : > th
dose dependency : dose dependent
G
type of G : sin
peak or start time of G : 6.82
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose dependent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
202.81 0.669 3.06 -0.224 0.18 3.75 -0.291 9.25 0.0226 5.84 56.29 96 6.92 --
225.19 0.699 3.01 -0.0397 0.149 2.42 0.203 -- 0.034 6.45 52.71 105 7.14 --
202.53 0.663 3.07 -0.214 0.178 4.15 -- 10.2 0.0241 5.78 56.4 95 6.83 --
220.3 0.691 3.04 -0.0651 0.222 1.58 -- -- 0.065 5.34 54.77 96 7.12 --
204.15 0.665 3.07 -0.207 -- 4.1 -- 10.1 0.0302 -- 56.44 95 6.82 --
226.04 0.705 3.03 -0.271 0.176 -- 0.0895 -- 0.00427 8.62 -- -- -- --
226.06 0.704 3.03 -0.268 0.178 -- -- -- 0.00393 8.34 -- -- -- --
220.78 0.692 3.03 -0.185 -- 1.28 -- -- 0.0395 -- 54.79 95 7.14 --
220.25 0.691 3.03 -- 0.156 1.41 -- -- 0.0574 5.92 54.8 95 7.16 --
227.82 0.705 3.04 -0.267 -- -- -- -- 0.00583 -- -- -- -- --
227.95 0.706 3.02 -- 0.177 -- -- -- 0.0338 8.45 -- -- -- --
221.65 0.693 3.02 -- -- 1.36 -- -- 0.0619 -- 54.86 95 7.14 --
229.7 0.707 3.03 -- -- -- -- -- 0.0355 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 210.63 atmosphere 1000.0 10 < th dose independent rect. 13 1
7 212.97 wind 9.0 90 > th dose dependent rect. 22 12
12 213.96 wind 9.0 90 > th dose independent rect. 22 12
13 214.37 wind 9.0 270 > th dose independent rect. 22 4
21 214.37 wind 9.0 270 > th dose dependent rect. 22 4
29 214.42 wind 9.0 1440 > th dose independent rect. 22 4
37 214.42 wind 9.0 1440 > th dose dependent rect. 22 4
45 214.44 wind 9.0 1440 > th dose independent rect. 22 1
49 214.44 wind 9.0 1440 > th dose dependent rect. 22 1
53 214.45 wind 9.0 270 > th dose independent rect. 22 1
65 214.45 wind 9.0 270 > th dose dependent rect. 22 1
109 215.45 wind 1.0 90 < th dose dependent rect. 8 3
111 216.03 wind 1.0 90 < th dose independent rect. 8 3
125 216.71 temperature 30.0 30 > th dose independent rect. 13 1
148 218.02 temperature 30.0 10 > th dose dependent rect. 14 1
152 218.15 temperature 30.0 90 > th dose dependent rect. 12 1
167 218.61 precipitation 0.1 1440 > th dose independent rect. 12 1
170 218.61 precipitation 0.1 1440 > th dose dependent rect. 12 1
207 218.76 wind 1.0 1440 < th dose dependent rect. 17 1
209 218.85 wind 1.0 1440 < th dose independent rect. 17 1
211 218.99 wind 1.0 1440 > th dose independent rect. 17 1
279 219.37 radiation 10.0 90 < th dose dependent rect. 9 3
305 219.60 radiation 10.0 90 < th dose independent rect. 8 4
325 219.70 wind 3.0 90 < th dose dependent rect. 18 2
353 219.83 radiation 10.0 90 < th dose dependent rect. 11 1
368 220.13 radiation 10.0 270 < th dose independent rect. 6 22
372 220.21 wind 3.0 90 < th dose independent rect. 18 2
379 220.40 wind 1.0 720 < th dose dependent rect. 3 2
384 220.47 radiation 40.0 10 > th dose independent sin 13 NA
397 220.61 humidity 80.0 30 < th dose independent rect. 1 4
398 220.62 humidity 60.0 90 < th dose independent rect. 12 1
403 220.62 humidity 80.0 30 < th dose dependent rect. 1 3
411 220.67 humidity 80.0 30 < th dose independent rect. 1 1
418 220.67 humidity 80.0 30 < th dose dependent rect. 1 1
422 220.68 radiation 10.0 720 < th dose dependent rect. 11 1
431 220.72 radiation 40.0 10 > th dose independent rect. 12 22
443 220.77 atmosphere 1010.0 90 > th dose independent rect. 8 1
444 220.77 atmosphere 1010.0 10 > th dose independent rect. 9 1
524 220.94 radiation 40.0 90 > th dose dependent rect. 12 1
539 221.01 wind 1.0 4320 < th dose dependent rect. 4 1
543 221.02 humidity 60.0 10 < th dose dependent rect. 14 1
549 221.05 atmosphere 1000.0 10 < th dose independent rect. 13 16
552 221.07 atmosphere 1000.0 10 < th dose independent rect. 13 11
559 221.10 wind 3.0 270 < th dose dependent rect. 16 3
567 221.14 radiation 10.0 90 < th dose independent rect. 8 1
569 221.14 radiation 10.0 270 < th dose dependent rect. 6 22
571 221.16 wind 7.0 43200 > th dose dependent rect. 18 2
578 221.24 wind 3.0 270 < th dose dependent rect. 16 1
580 221.26 wind 1.0 720 < th dose independent rect. 3 2
582 221.27 radiation 10.0 720 < th dose independent rect. 11 1
587 221.29 radiation 40.0 10 > th dose independent rect. 14 1
636 221.32 radiation 40.0 30 < th dose independent rect. 21 23
638 221.33 radiation 10.0 270 < th dose independent rect. 7 10
644 221.34 wind 1.0 90 < th dose dependent rect. 9 9
652 221.36 atmosphere 1005.0 10 < th dose dependent rect. 20 1
654 221.37 wind 1.0 270 < th dose independent rect. 16 1
661 221.38 wind 1.0 90 < th dose dependent rect. 9 7
670 221.41 radiation 1.0 43200 < th dose dependent rect. 20 8
697 221.52 wind 1.0 30 < th dose dependent rect. 11 2
703 221.55 atmosphere 1000.0 10 < th dose independent sin 21 NA
709 221.56 radiation 10.0 720 < th dose independent rect. 6 7
710 221.56 radiation 10.0 270 < th dose dependent rect. 7 9
712 221.57 radiation 10.0 720 < th dose independent rect. 22 15
726 221.60 wind 3.0 43200 > th dose dependent rect. 17 1
738 221.63 radiation 10.0 720 < th dose independent rect. 17 20
739 221.63 radiation 10.0 720 < th dose independent rect. 17 22
740 221.63 radiation 40.0 30 < th dose independent rect. 3 23
742 221.64 wind 1.0 90 < th dose independent rect. 11 1
756 221.65 radiation 10.0 270 < th dose independent rect. 11 23
772 221.67 humidity 60.0 90 < th dose dependent rect. 12 1
784 221.71 radiation 10.0 720 < th dose independent rect. 24 15
789 221.72 wind 5.0 43200 < th dose independent rect. 17 1
803 221.74 humidity 90.0 30 < th dose dependent rect. 22 5
805 221.75 radiation 30.0 90 > th dose independent rect. 7 2
826 221.76 humidity 90.0 720 > th dose independent rect. 10 1
827 221.76 atmosphere 1005.0 14400 > th dose independent rect. 20 1
834 221.77 atmosphere 1005.0 14400 < th dose independent rect. 19 2
837 221.78 wind 5.0 43200 > th dose independent rect. 17 2
841 221.78 radiation 40.0 90 > th dose dependent rect. 12 22
844 221.79 humidity 90.0 720 > th dose dependent rect. 10 1
848 221.80 radiation 10.0 90 < th dose independent rect. 11 1
863 221.82 wind 1.0 270 < th dose dependent rect. 11 1
867 221.83 atmosphere 1000.0 30 > th dose independent sin 0 NA
877 221.84 atmosphere 1000.0 14400 > th dose dependent rect. 8 1
885 221.86 atmosphere 1000.0 10 < th dose independent rect. 3 12
887 221.86 wind 3.0 10 > th dose dependent rect. 13 1
888 221.86 atmosphere 1000.0 14400 > th dose dependent rect. 6 1
894 221.87 atmosphere 1010.0 14400 < th dose independent rect. 9 1
896 221.87 atmosphere 1000.0 14400 > th dose dependent rect. 24 1
899 221.87 atmosphere 1000.0 14400 > th dose dependent rect. 6 4
900 221.87 atmosphere 1000.0 14400 > th dose dependent rect. 4 5
910 221.88 atmosphere 1015.0 14400 < th dose dependent rect. 24 1
932 221.89 atmosphere 1000.0 14400 > th dose dependent rect. 24 10
934 221.90 radiation 10.0 720 > th dose independent rect. 6 9
961 221.91 atmosphere 1010.0 14400 < th dose independent rect. 5 1
979 221.91 radiation 40.0 30 < th dose independent rect. 23 23
984 221.91 atmosphere 1000.0 14400 > th dose dependent rect. 24 7
988 221.92 atmosphere 1010.0 14400 > th dose independent rect. 9 1