Os08g0433400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Transcription repressor MYB4 (Myb-related protein 4) (AtMYB4).
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Os08g0433400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Transcription repressor MYB4 (Myb-related protein 4) (AtMYB4).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 156.42 | 0.588 | 4.53 | 2.76 | 0.413 | 2.27 | -0.119 | 1.79 | 1.21 | 10.5 | 26.67 | 252 | -- | -- |
| 160.41 | 0.59 | 4.5 | 3.1 | 0.461 | 2.19 | -0.257 | -- | 1.28 | 10.7 | 27.1 | 221 | -- | -- |
| 156.35 | 0.582 | 4.53 | 2.77 | 0.437 | 2.27 | -- | 1.79 | 1.22 | 10.5 | 26.63 | 240 | -- | -- |
| 160.68 | 0.59 | 4.5 | 3.08 | 0.455 | 2.19 | -- | -- | 1.28 | 10.8 | 27.1 | 222 | -- | -- |
| 161.16 | 0.591 | 4.54 | 2.74 | -- | 2.34 | -- | 1.87 | 1.22 | -- | 26.89 | 409 | -- | -- |
| 229.51 | 0.71 | 4.6 | 2.5 | 0.639 | -- | 0.0211 | -- | 0.801 | 6.89 | -- | -- | -- | -- |
| 229.51 | 0.709 | 4.6 | 2.5 | 0.639 | -- | -- | -- | 0.8 | 6.89 | -- | -- | -- | -- |
| 165.1 | 0.598 | 4.51 | 3.09 | -- | 2.24 | -- | -- | 1.29 | -- | 27.83 | 444 | -- | -- |
| 379.93 | 0.913 | 4.63 | -- | 0.613 | 1.17 | -- | -- | 0.661 | 8.62 | 50.71 | 37 | -- | -- |
| 250.94 | 0.74 | 4.62 | 2.52 | -- | -- | -- | -- | 0.813 | -- | -- | -- | -- | -- |
| 394.47 | 0.929 | 4.66 | -- | 0.669 | -- | -- | -- | 0.522 | 6.66 | -- | -- | -- | -- |
| 391.92 | 0.922 | 4.64 | -- | -- | 1.2 | -- | -- | 0.708 | -- | 31.3 | 402 | -- | -- |
| 417.84 | 0.954 | 4.68 | -- | -- | -- | -- | -- | 0.534 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 153.89 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 7 |
| 4 | 154.01 | temperature | 20 | 1440 | > th | dose dependent | rect. | 23 | 2 |
| 57 | 155.50 | temperature | 30 | 1440 | < th | dose dependent | rect. | 21 | 5 |
| 60 | 155.54 | temperature | 30 | 1440 | < th | dose dependent | rect. | 20 | 7 |
| 63 | 155.57 | temperature | 30 | 1440 | < th | dose dependent | rect. | 22 | 3 |
| 80 | 155.77 | temperature | 30 | 1440 | < th | dose dependent | rect. | 23 | 1 |
| 214 | 157.04 | temperature | 30 | 1440 | < th | dose dependent | sin | 10 | NA |
| 264 | 157.27 | temperature | 20 | 1440 | > th | dose dependent | sin | 10 | NA |
| 336 | 157.84 | temperature | 25 | 270 | < th | dose dependent | rect. | 11 | 22 |
| 516 | 158.99 | temperature | 30 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 584 | 159.43 | temperature | 25 | 270 | < th | dose dependent | no | NA | NA |
| 592 | 159.46 | temperature | 10 | 270 | > th | dose dependent | sin | 9 | NA |
| 639 | 159.74 | temperature | 25 | 270 | < th | dose dependent | rect. | 21 | 23 |
| 647 | 159.78 | temperature | 20 | 1440 | > th | dose dependent | rect. | 5 | 1 |
| 663 | 159.88 | temperature | 25 | 270 | < th | dose dependent | rect. | 15 | 23 |
| 691 | 160.01 | temperature | 30 | 270 | < th | dose dependent | sin | 10 | NA |
| 777 | 160.45 | temperature | 25 | 720 | < th | dose dependent | rect. | 5 | 20 |
| 801 | 160.54 | temperature | 25 | 270 | < th | dose dependent | rect. | 6 | 23 |
| 884 | 160.90 | temperature | 30 | 30 | < th | dose dependent | rect. | 9 | 23 |
| 935 | 161.14 | temperature | 30 | 30 | < th | dose dependent | rect. | 21 | 23 |
| 963 | 161.33 | temperature | 25 | 1440 | < th | dose dependent | no | NA | NA |