FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0695900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : OSMYB4.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.43 (0.0345) R2 : 0.137
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 1.21 (0.146) R2dE : 0.136 R2E : 0.102
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.273 (0.074) R2dN8 : 0.0353 R2N8 : 0.000922
σ : 0.644
deviance : 191.21
__
_____
C
peak time of C : --
E
wheather : wind
threshold : 0.1
memory length : 4387
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 7.06
open length of G : 0.6

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
179.09 0.629 3.42 0.094 0.43 1.23 0.355 0.941 0.28 0.233 0.09792 4427 7.07 0.683
179.57 0.624 3.43 0.0845 0.437 1.33 0.339 -- 0.287 0.243 0.1 4426 7.07 0.68
179.6 0.624 3.42 0.0807 0.43 1.24 -- 0.889 0.279 0.0138 0.089 4423 7.07 0.672
180.01 0.625 3.44 0.0734 0.428 1.33 -- -- 0.281 24 0.09992 4422 7.07 0.667
191.19 0.644 3.42 0.11 -- 1.21 -- 0.972 0.28 -- 0.07674 4387 7.07 0.683
206.44 0.674 3.46 0.338 0.4 -- 0.335 -- 0.174 0.343 -- -- -- --
206.9 0.674 3.46 0.326 0.399 -- -- -- 0.173 0.107 -- -- -- --
191.62 0.645 3.42 0.0964 -- 1.29 -- -- 0.289 -- 0.09999 4426 7.06 0.682
179.47 0.624 3.44 -- 0.432 1.28 -- -- 0.281 0.0133 0.09687 4426 7.07 0.623
216.93 0.688 3.45 0.339 -- -- -- -- 0.179 -- -- -- -- --
209.7 0.677 3.47 -- 0.404 -- -- -- 0.137 0.152 -- -- -- --
191.21 0.644 3.43 -- -- 1.21 -- -- 0.273 -- 0.1 4387 7.06 0.6
219.95 0.692 3.46 -- -- -- -- -- 0.141 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 191.05 wind 1.0 4320 < th dose dependent rect. 7 1
2 191.27 wind 5.0 1440 < th dose independent rect. 17 1
3 191.41 atmosphere 995.0 14400 > th dose independent rect. 18 1
5 192.22 radiation 40.0 1440 < th dose independent rect. 17 16
7 192.30 radiation 40.0 1440 < th dose independent rect. 5 4
8 192.38 precipitation 0.1 14400 > th dose dependent rect. 17 1
9 192.40 wind 1.0 4320 > th dose independent rect. 10 2
11 192.45 atmosphere 995.0 14400 < th dose independent rect. 18 1
14 192.45 atmosphere 995.0 14400 < th dose dependent rect. 18 1
17 192.48 wind 5.0 1440 > th dose independent rect. 17 1
18 192.49 radiation 40.0 1440 < th dose independent rect. 3 6
19 192.56 temperature 30.0 4320 > th dose dependent rect. 8 1
33 192.60 radiation 40.0 1440 < th dose independent rect. 19 14
34 192.63 radiation 40.0 1440 > th dose independent rect. 8 1
54 192.72 precipitation 0.1 14400 < th dose independent rect. 17 1
55 192.72 precipitation 0.1 14400 < th dose dependent rect. 17 1
59 192.86 radiation 40.0 1440 < th dose independent rect. 22 11
64 193.14 precipitation 0.1 14400 > th dose independent rect. 17 1
65 193.14 wind 5.0 90 > th dose dependent rect. 17 2
71 193.21 wind 5.0 720 > th dose independent rect. 15 3
108 193.98 wind 9.0 4320 < th dose independent rect. 19 9
110 194.03 wind 9.0 4320 < th dose independent rect. 19 4
111 194.05 wind 5.0 1440 < th dose independent rect. 15 3
115 194.16 atmosphere 995.0 14400 > th dose independent rect. 13 6
116 194.17 wind 5.0 720 > th dose independent rect. 12 6
117 194.17 atmosphere 995.0 14400 > th dose independent rect. 13 8
121 194.20 atmosphere 995.0 14400 > th dose independent rect. 10 9
124 194.21 atmosphere 995.0 14400 > th dose independent rect. 10 11
135 194.29 atmosphere 995.0 14400 > th dose independent rect. 7 12
137 194.31 atmosphere 995.0 14400 > th dose independent rect. 7 14
139 194.34 wind 9.0 4320 > th dose independent rect. 20 1
143 194.37 precipitation 0.1 90 > th dose independent rect. 16 5
171 194.40 wind 1.0 4320 < th dose independent rect. 7 1
201 194.69 temperature 25.0 10 < th dose dependent rect. 16 2
202 194.69 temperature 25.0 90 < th dose dependent rect. 17 2
203 194.71 wind 9.0 4320 > th dose independent rect. 20 8
205 194.72 wind 9.0 4320 < th dose independent rect. 20 1
223 194.86 temperature 30.0 4320 > th dose independent rect. 8 1
241 194.87 wind 9.0 4320 > th dose dependent rect. 20 8
245 194.90 precipitation 0.1 90 > th dose dependent rect. 15 7
246 194.91 wind 9.0 4320 > th dose dependent rect. 20 1
253 194.97 radiation 20.0 4320 < th dose independent rect. 10 1
255 194.98 precipitation 0.1 90 > th dose dependent rect. 17 4
257 195.00 precipitation 0.1 10 > th dose independent rect. 17 5
267 195.00 precipitation 0.1 10 > th dose dependent rect. 17 5
280 195.01 radiation 10.0 4320 < th dose dependent rect. 13 1
366 195.10 atmosphere 1005.0 14400 > th dose independent rect. 12 1
369 195.11 radiation 30.0 4320 < th dose dependent rect. 10 1
371 195.12 wind 5.0 90 > th dose independent rect. 17 2
374 195.13 wind 1.0 4320 < th dose independent rect. 10 2
386 195.14 wind 9.0 4320 > th dose independent rect. 20 6
399 195.21 wind 3.0 4320 < th dose independent rect. 22 1
403 195.23 atmosphere 1005.0 14400 < th dose independent rect. 13 1
405 195.23 wind 5.0 720 < th dose independent rect. 11 8
409 195.27 wind 3.0 1440 > th dose dependent rect. 17 1
411 195.29 atmosphere 1005.0 4320 < th dose independent rect. 19 1
415 195.31 atmosphere 1005.0 4320 > th dose independent rect. 19 1
417 195.31 wind 9.0 4320 > th dose dependent rect. 20 6
421 195.32 wind 9.0 4320 > th dose dependent rect. 20 4
471 195.37 wind 3.0 4320 > th dose independent rect. 22 1
475 195.39 radiation 1.0 14400 < th dose dependent rect. 22 2
486 195.43 radiation 10.0 4320 > th dose independent rect. 10 1
493 195.44 wind 5.0 1440 < th dose independent rect. 12 6
495 195.45 wind 1.0 43200 > th dose dependent rect. 23 5
501 195.47 precipitation 0.1 90 > th dose dependent rect. 10 12
507 195.49 wind 3.0 43200 < th dose dependent rect. 4 1
512 195.51 precipitation 0.1 90 > th dose dependent sin 19 NA
545 195.62 temperature 25.0 90 < th dose dependent rect. 11 8
548 195.64 radiation 10.0 4320 > th dose dependent rect. 10 1
561 195.68 temperature 30.0 4320 < th dose independent rect. 4 5
576 195.70 radiation 40.0 4320 > th dose dependent rect. 10 1
578 195.71 temperature 30.0 4320 < th dose independent rect. 22 11
580 195.72 temperature 30.0 4320 < th dose independent rect. 24 9
581 195.72 temperature 25.0 10 < th dose dependent rect. 10 9
611 195.87 wind 5.0 1440 < th dose independent rect. 7 11
612 195.87 wind 5.0 720 < th dose independent rect. 7 15
631 195.89 wind 3.0 4320 < th dose dependent rect. 11 1
634 195.90 wind 5.0 720 < th dose independent sin 21 NA
650 195.94 precipitation 0.1 30 > th dose independent rect. 7 11
656 195.94 wind 1.0 4320 > th dose dependent rect. 23 1
658 195.94 precipitation 0.1 30 > th dose dependent rect. 7 11
662 195.94 radiation 40.0 4320 > th dose dependent rect. 14 22
690 196.00 atmosphere 1000.0 4320 > th dose independent rect. 9 1
691 196.00 atmosphere 1000.0 4320 < th dose independent rect. 9 1
703 196.01 radiation 40.0 4320 > th dose dependent rect. 8 4
724 196.03 temperature 30.0 4320 < th dose independent rect. 2 7
726 196.04 precipitation 0.1 10 > th dose independent sin 20 NA
729 196.04 precipitation 0.1 10 > th dose dependent sin 20 NA
754 196.11 precipitation 0.1 10 > th dose independent rect. 17 1
819 196.11 precipitation 0.1 10 > th dose dependent rect. 17 1
892 196.14 wind 3.0 43200 < th dose dependent rect. 23 6
898 196.15 wind 5.0 720 > th dose dependent rect. 15 3
901 196.17 temperature 30.0 4320 < th dose independent rect. 7 2
908 196.19 atmosphere 1000.0 90 < th dose independent rect. 16 1
911 196.19 temperature 30.0 4320 < th dose independent rect. 19 14
956 196.27 radiation 10.0 14400 < th dose independent rect. 12 1
966 196.28 atmosphere 1005.0 14400 > th dose independent rect. 5 13
970 196.29 radiation 1.0 14400 < th dose dependent rect. 19 5
981 196.31 precipitation 0.1 90 > th dose independent sin 20 NA
985 196.32 atmosphere 1005.0 14400 < th dose independent rect. 5 13