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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0461000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Myb-related transcription factor LBM1.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.04 (0.0124) R2 : 0.000191
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.00772 (0.0262) R2dN8 : 0.000247 R2N8 : 0.000191
σ : 0.234
deviance : 25.12
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
23.32 0.227 3.05 -0.0453 0.0776 -0.167 0.0241 1.03 -0.0178 9.38 1.1 16 -- --
24.29 0.231 3.04 0.00461 0.0858 -0.0965 0.0386 -- -0.00543 9.09 1 14 -- --
23.32 0.225 3.05 -0.0443 0.0777 -0.166 -- 1.04 -0.0178 9.3 1.102 16 -- --
24.3 0.231 3.04 0.00603 0.0866 -0.0938 -- -- -0.00558 8.83 1.003 14 -- --
23.67 0.227 3.05 -0.0472 -- -0.177 -- 1.06 -0.0177 -- 1.112 16 -- --
24.57 0.232 3.04 0.017 0.1 -- -0.0362 -- -0.00733 7.65 -- -- -- --
24.57 0.232 3.04 0.0163 0.1 -- -- -- -0.00718 7.8 -- -- -- --
24.72 0.233 3.04 0.00482 -- -0.104 -- -- -0.00484 -- 1.003 14 -- --
24.3 0.231 3.04 -- 0.0866 -0.0944 -- -- -0.00623 8.83 1 14 -- --
25.12 0.234 3.04 0.0175 -- -- -- -- -0.00579 -- -- -- -- --
24.58 0.232 3.04 -- 0.1 -- -- -- -0.009 7.79 -- -- -- --
24.72 0.232 3.04 -- -- -0.105 -- -- -0.00537 -- 1.003 14 -- --
25.12 0.234 3.04 -- -- -- -- -- -0.00772 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 19.16 temperature 20.0 30 > th dose dependent rect. 2 1
2 19.19 atmosphere 1005.0 30 > th dose independent rect. 2 1
3 19.19 atmosphere 1000.0 30 > th dose dependent rect. 2 1
5 19.20 temperature 20.0 30 > th dose independent rect. 2 1
10 19.27 wind 3.0 30 < th dose dependent rect. 2 1
11 19.28 wind 3.0 30 < th dose independent rect. 2 1
15 19.31 humidity 80.0 30 > th dose independent rect. 2 1
18 19.32 humidity 60.0 30 > th dose dependent rect. 2 1
20 19.33 temperature 10.0 30 > th dose independent rect. 2 1
22 19.33 temperature 30.0 30 < th dose independent rect. 2 1
23 19.33 humidity 50.0 30 > th dose independent rect. 2 1
27 19.33 atmosphere 1010.0 30 < th dose independent rect. 2 1
29 19.33 radiation 1.0 30 < th dose independent rect. 2 1
34 19.33 precipitation 0.1 30 < th dose independent rect. 2 1
35 19.33 temperature 10.0 30 > th dose independent rect. 3 23
38 19.33 radiation 1.0 30 < th dose dependent rect. 2 1
43 19.33 precipitation 0.1 30 < th dose dependent rect. 2 1
49 19.58 atmosphere 1015.0 30 < th dose dependent rect. 2 1
50 19.62 temperature 30.0 30 < th dose dependent rect. 2 1
52 19.71 wind 1.0 30 > th dose independent rect. 2 1
65 20.01 radiation 1.0 4320 < th dose dependent rect. 3 1
68 20.05 radiation 10.0 43200 < th dose dependent rect. 3 1
79 20.07 wind 9.0 1440 < th dose independent rect. 3 1
80 20.07 temperature 10.0 1440 > th dose independent rect. 3 1
83 20.07 temperature 30.0 1440 < th dose independent rect. 3 1
87 20.07 humidity 50.0 1440 > th dose independent rect. 3 1
96 20.07 atmosphere 995.0 1440 > th dose independent rect. 3 1
97 20.07 radiation 1.0 1440 < th dose independent rect. 3 1
117 20.07 temperature 10.0 1440 > th dose independent rect. 4 23
161 20.34 atmosphere 1000.0 30 > th dose independent rect. 3 23
171 20.75 wind 9.0 30 < th dose independent rect. 3 23
173 20.81 precipitation 0.1 30 < th dose independent rect. 3 23
175 20.81 precipitation 0.1 30 < th dose dependent rect. 3 23
202 21.73 humidity 50.0 30 > th dose independent rect. 3 23
237 21.94 humidity 90.0 90 < th dose independent rect. 2 1
257 22.34 temperature 30.0 30 < th dose independent rect. 3 23
280 22.58 temperature 25.0 270 > th dose independent rect. 23 4
331 22.85 atmosphere 995.0 720 > th dose independent rect. 23 16
395 22.96 atmosphere 1000.0 720 > th dose independent rect. 3 8
437 23.01 atmosphere 1015.0 30 < th dose independent rect. 3 23
447 23.03 wind 1.0 30 > th dose independent rect. 3 23
460 23.05 atmosphere 995.0 30 > th dose dependent rect. 3 23
470 23.08 wind 1.0 30 < th dose independent rect. 21 6
482 23.10 precipitation 0.1 720 < th dose independent rect. 15 8
489 23.10 precipitation 0.1 720 < th dose dependent rect. 15 8
490 23.11 wind 1.0 10 < th dose independent rect. 13 14
494 23.11 wind 3.0 30 < th dose dependent rect. 2 6
521 23.16 atmosphere 1000.0 10 > th dose independent rect. 14 12
557 23.17 atmosphere 995.0 720 > th dose independent rect. 15 23
562 23.18 atmosphere 995.0 720 > th dose independent rect. 15 8
568 23.19 humidity 60.0 10 > th dose independent rect. 14 12
575 23.20 temperature 10.0 720 > th dose independent rect. 15 8
578 23.20 temperature 10.0 720 > th dose independent rect. 23 16
579 23.20 precipitation 0.1 720 < th dose independent rect. 11 16
581 23.20 atmosphere 995.0 720 > th dose independent rect. 3 23
587 23.20 precipitation 0.1 720 < th dose dependent rect. 11 16
590 23.21 wind 1.0 30 < th dose independent rect. 2 10
592 23.21 atmosphere 1000.0 10 > th dose independent rect. 2 12
593 23.21 radiation 40.0 30 < th dose independent rect. 14 12
603 23.22 radiation 40.0 10 < th dose dependent rect. 14 12
607 23.23 humidity 50.0 720 > th dose independent rect. 3 8
610 23.24 atmosphere 995.0 720 > th dose independent rect. 7 8
613 23.25 temperature 10.0 720 > th dose independent rect. 3 8
615 23.25 temperature 10.0 720 > th dose independent rect. 11 16
623 23.26 atmosphere 1000.0 10 > th dose independent rect. 16 10
626 23.26 wind 3.0 30 < th dose dependent rect. 2 10
629 23.27 atmosphere 1000.0 10 > th dose independent rect. 2 14
636 23.28 wind 1.0 10 < th dose independent rect. 6 21
648 23.30 atmosphere 995.0 1440 > th dose independent rect. 3 12
650 23.31 humidity 90.0 10 > th dose independent rect. 24 3
655 23.31 humidity 90.0 90 < th dose dependent rect. 2 1
683 23.34 wind 9.0 720 < th dose independent rect. 3 8
685 23.34 radiation 10.0 10 < th dose independent rect. 16 10
686 23.34 wind 9.0 10 < th dose independent rect. 2 12
687 23.34 wind 9.0 10 < th dose independent rect. 14 12
695 23.34 radiation 10.0 10 < th dose dependent rect. 4 22
697 23.35 atmosphere 995.0 720 > th dose independent rect. 14 1
700 23.35 temperature 10.0 10 > th dose independent rect. 2 12
702 23.35 temperature 10.0 10 > th dose independent rect. 14 12
704 23.35 atmosphere 1015.0 10 < th dose independent rect. 2 12
705 23.35 radiation 10.0 10 < th dose independent rect. 14 12
706 23.35 precipitation 0.1 10 < th dose independent rect. 2 12
713 23.35 precipitation 0.1 10 < th dose dependent rect. 2 12
731 23.37 wind 1.0 720 > th dose independent rect. 14 1
733 23.37 precipitation 0.1 720 < th dose independent rect. 14 1
735 23.37 wind 9.0 10 < th dose independent rect. 16 10
741 23.37 precipitation 0.1 720 < th dose dependent rect. 14 1
746 23.38 temperature 10.0 720 > th dose independent rect. 14 1
752 23.38 atmosphere 1015.0 720 < th dose independent rect. 14 1
758 23.38 precipitation 0.1 720 < th dose independent rect. 2 1
760 23.38 temperature 10.0 1440 > th dose independent rect. 3 12
763 23.38 temperature 10.0 1440 > th dose independent rect. 15 12
768 23.38 temperature 10.0 720 > th dose independent rect. 15 23
774 23.38 precipitation 0.1 720 < th dose dependent rect. 2 1
781 23.39 precipitation 0.1 30 < th dose independent rect. 14 12
783 23.39 precipitation 0.1 10 < th dose independent rect. 2 14
786 23.39 temperature 10.0 720 > th dose dependent rect. 2 1
792 23.39 precipitation 0.1 30 < th dose dependent rect. 14 12
793 23.39 precipitation 0.1 10 < th dose dependent rect. 2 14
795 23.40 temperature 10.0 10 > th dose independent rect. 16 10
796 23.40 humidity 50.0 10 > th dose independent rect. 16 10
800 23.40 wind 9.0 10 < th dose independent rect. 2 14
801 23.40 temperature 10.0 10 > th dose independent rect. 2 14
803 23.40 atmosphere 1015.0 10 < th dose independent rect. 2 14
804 23.40 precipitation 0.1 720 < th dose independent rect. 15 16
810 23.40 precipitation 0.1 720 < th dose dependent rect. 15 16
812 23.41 temperature 30.0 10 < th dose independent rect. 14 12
825 23.42 radiation 10.0 30 < th dose independent rect. 3 23
832 23.43 wind 9.0 720 < th dose independent rect. 14 1
833 23.43 precipitation 0.1 10 < th dose independent rect. 16 10
841 23.43 precipitation 0.1 10 < th dose dependent rect. 16 10
844 23.44 wind 1.0 10 > th dose independent sin 14 NA
848 23.44 temperature 30.0 10 < th dose independent rect. 16 10
857 23.44 temperature 30.0 720 < th dose independent rect. 15 22
882 23.45 atmosphere 995.0 30 > th dose dependent rect. 14 12
892 23.46 precipitation 0.1 720 < th dose independent rect. 19 8
910 23.46 precipitation 0.1 720 < th dose dependent rect. 19 8
919 23.47 temperature 10.0 1440 > th dose independent rect. 17 10
923 23.47 radiation 30.0 1440 < th dose independent rect. 17 10
935 23.47 temperature 10.0 1440 > th dose independent rect. 3 14
946 23.47 radiation 1.0 10 < th dose dependent rect. 2 12
952 23.48 wind 1.0 10 > th dose independent rect. 21 23
962 23.49 radiation 1.0 720 > th dose independent rect. 14 1
967 23.49 temperature 30.0 30 < th dose independent rect. 2 12
968 23.49 humidity 50.0 10 > th dose independent rect. 2 12
970 23.49 atmosphere 995.0 720 > th dose independent rect. 3 16
974 23.49 wind 9.0 720 < th dose dependent rect. 2 1