Os01g0285300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Myb, DNA-binding domain containing protein.
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Os01g0285300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Myb, DNA-binding domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 505.68 | 1.06 | 6.38 | -5.67 | 0.119 | 4.7 | -2.78 | -6.64 | -0.5 | 14.8 | 24.99 | 1161 | -- | -- |
| 519.47 | 1.06 | 6.19 | -4.1 | 0.135 | 4.08 | -2.49 | -- | -0.123 | 15.3 | 24.85 | 1153 | -- | -- |
| 529.07 | 1.07 | 6.29 | -5.04 | 0.274 | 4.37 | -- | -3.62 | -0.322 | 18.2 | 25.12 | 1194 | -- | -- |
| 536.22 | 1.08 | 6.2 | -4.22 | 0.298 | 3.96 | -- | -- | -0.107 | 19.6 | 25.05 | 1208 | -- | -- |
| 531.78 | 1.07 | 6.31 | -5.15 | -- | 4.46 | -- | -4.26 | -0.338 | -- | 25.04 | 1168 | -- | -- |
| 1048.17 | 1.52 | 6.09 | -2.84 | 0.851 | -- | 2.67 | -- | 0.331 | 0.641 | -- | -- | -- | -- |
| 1075.95 | 1.54 | 6.11 | -2.94 | 0.867 | -- | -- | -- | 0.322 | 23.6 | -- | -- | -- | -- |
| 539.59 | 1.08 | 6.19 | -4.15 | -- | 4.05 | -- | -- | -0.104 | -- | 25.05 | 1160 | -- | -- |
| 947.46 | 1.43 | 5.96 | -- | 0.454 | 2.79 | -- | -- | 0.894 | 21.5 | 27.8 | 1225 | -- | -- |
| 1123.24 | 1.57 | 6.09 | -2.91 | -- | -- | -- | -- | 0.333 | -- | -- | -- | -- | -- |
| 1303.56 | 1.69 | 6.03 | -- | 0.835 | -- | -- | -- | 0.65 | 23.4 | -- | -- | -- | -- |
| 957.58 | 1.44 | 5.96 | -- | -- | 2.92 | -- | -- | 0.866 | -- | 27.65 | 1172 | -- | -- |
| 1347.27 | 1.71 | 6.01 | -- | -- | -- | -- | -- | 0.656 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 537.19 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 23 |
| 5 | 537.91 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 19 |
| 6 | 538.06 | temperature | 25 | 720 | > th | dose dependent | rect. | 17 | 16 |
| 10 | 538.22 | temperature | 25 | 1440 | > th | dose dependent | rect. | 6 | 18 |
| 35 | 539.36 | temperature | 25 | 1440 | > th | dose dependent | rect. | 11 | 23 |
| 48 | 539.84 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 53 | 539.95 | temperature | 25 | 1440 | > th | dose dependent | rect. | 20 | 23 |
| 102 | 541.83 | temperature | 25 | 1440 | > th | dose dependent | sin | 20 | NA |
| 154 | 543.82 | temperature | 25 | 720 | > th | dose dependent | sin | 11 | NA |
| 175 | 544.66 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 8 |
| 209 | 546.55 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 11 |
| 248 | 549.12 | temperature | 25 | 1440 | > th | dose dependent | rect. | 16 | 1 |
| 411 | 572.05 | temperature | 30 | 1440 | < th | dose independent | rect. | 18 | 22 |
| 415 | 573.23 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 7 |
| 420 | 574.92 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 23 |
| 423 | 575.00 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 20 |
| 424 | 575.04 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 12 |
| 428 | 575.09 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 10 |
| 430 | 575.10 | temperature | 30 | 1440 | < th | dose independent | rect. | 13 | 23 |
| 431 | 575.13 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 18 |
| 434 | 575.16 | temperature | 30 | 1440 | > th | dose independent | rect. | 18 | 22 |
| 441 | 575.41 | temperature | 30 | 1440 | > th | dose independent | rect. | 9 | 7 |
| 449 | 576.56 | temperature | 30 | 1440 | > th | dose independent | rect. | 9 | 10 |
| 477 | 576.81 | temperature | 30 | 1440 | < th | dose independent | rect. | 2 | 14 |
| 479 | 576.88 | temperature | 30 | 1440 | < th | dose independent | rect. | 4 | 12 |
| 481 | 576.92 | temperature | 30 | 1440 | < th | dose independent | rect. | 6 | 10 |
| 485 | 577.02 | temperature | 30 | 1440 | < th | dose independent | rect. | 20 | 20 |
| 487 | 577.05 | temperature | 30 | 1440 | < th | dose independent | rect. | 23 | 17 |
| 494 | 577.17 | temperature | 30 | 1440 | < th | dose independent | sin | 23 | NA |
| 517 | 577.67 | temperature | 30 | 1440 | < th | dose independent | rect. | 2 | 19 |
| 518 | 577.67 | temperature | 30 | 1440 | > th | dose independent | rect. | 13 | 23 |
| 522 | 577.72 | temperature | 30 | 1440 | < th | dose independent | rect. | 2 | 17 |
| 523 | 577.73 | temperature | 30 | 1440 | < th | dose independent | rect. | 4 | 17 |
| 526 | 577.75 | temperature | 30 | 1440 | < th | dose independent | rect. | 6 | 23 |
| 532 | 577.78 | temperature | 30 | 1440 | < th | dose independent | rect. | 4 | 15 |
| 533 | 577.78 | temperature | 30 | 1440 | < th | dose independent | rect. | 6 | 15 |
| 542 | 577.81 | temperature | 30 | 1440 | < th | dose independent | rect. | 6 | 18 |
| 547 | 577.82 | temperature | 30 | 1440 | < th | dose independent | rect. | 4 | 23 |
| 548 | 577.83 | temperature | 30 | 1440 | < th | dose independent | rect. | 6 | 13 |
| 558 | 577.87 | temperature | 30 | 1440 | < th | dose independent | no | NA | NA |
| 559 | 577.87 | temperature | 30 | 1440 | < th | dose independent | rect. | 6 | 21 |
| 560 | 577.87 | temperature | 30 | 1440 | < th | dose independent | rect. | 20 | 23 |
| 625 | 578.82 | temperature | 30 | 1440 | > th | dose independent | sin | 21 | NA |
| 690 | 580.05 | temperature | 30 | 1440 | > th | dose independent | no | NA | NA |
| 822 | 581.30 | temperature | 10 | 1440 | > th | dose dependent | rect. | 16 | 1 |
| 944 | 584.92 | temperature | 30 | 1440 | > th | dose independent | rect. | 13 | 6 |
| 983 | 585.41 | temperature | 25 | 1440 | > th | dose dependent | rect. | 7 | 1 |