Os11g0180900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Typical P-type R2R3 Myb protein (Fragment).
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Os11g0180900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Typical P-type R2R3 Myb protein (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 152.1 | 0.579 | 9.07 | 0.995 | 3.1 | -0.177 | 0.193 | 5.12 | 0.0944 | 7.54 | 16.51 | 4614 | -- | -- |
| 170.99 | 0.609 | 9.3 | -0.598 | 3.17 | 0.555 | 0.733 | -- | -0.456 | 7.64 | 34.31 | 19383 | -- | -- |
| 152.14 | 0.574 | 9.07 | 1.04 | 3.1 | -0.201 | -- | 5.19 | 0.105 | 7.53 | 17.18 | 4576 | -- | -- |
| 169.28 | 0.606 | 9.35 | -1.03 | 3.11 | 0.614 | -- | -- | -0.555 | 7.54 | 31.88 | 47520 | -- | -- |
| 665.01 | 1.2 | 9.12 | 1.24 | -- | -0.351 | -- | 4.97 | 0.239 | -- | 17.9 | 6391 | -- | -- |
| 178.7 | 0.627 | 9.29 | -0.438 | 3.1 | -- | 0.255 | -- | -0.324 | 7.54 | -- | -- | -- | -- |
| 178.88 | 0.626 | 9.3 | -0.432 | 3.1 | -- | -- | -- | -0.325 | 7.53 | -- | -- | -- | -- |
| 685.91 | 1.22 | 9.42 | -0.919 | -- | 0.552 | -- | -- | -0.497 | -- | 31.4 | 47520 | -- | -- |
| 181.26 | 0.63 | 9.28 | -- | 3.13 | 0.657 | -- | -- | -0.258 | 7.48 | 31.2 | 47520 | -- | -- |
| 693.83 | 1.23 | 9.37 | -0.386 | -- | -- | -- | -- | -0.276 | -- | -- | -- | -- | -- |
| 183.79 | 0.634 | 9.28 | -- | 3.1 | -- | -- | -- | -0.277 | 7.54 | -- | -- | -- | -- |
| 696.69 | 1.23 | 9.36 | -- | -- | -0.394 | -- | -- | -0.247 | -- | 30.9 | 47520 | -- | -- |
| 697.76 | 1.23 | 9.36 | -- | -- | -- | -- | -- | -0.234 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 146.13 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 4 | 9 |
| 2 | 146.13 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 4 | 9 |
| 3 | 146.17 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 4 | 9 |
| 4 | 146.24 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 4 | 9 |
| 10 | 146.53 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 7 | 2 |
| 11 | 146.53 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 7 | 2 |
| 14 | 146.61 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 7 | 2 |
| 18 | 146.64 | radiation | 10.0 | 4320 | > th | dose dependent | rect. | 7 | 1 |
| 19 | 146.64 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 7 | 2 |
| 25 | 146.76 | radiation | 10.0 | 4320 | > th | dose dependent | rect. | 17 | 15 |
| 27 | 146.78 | radiation | 1.0 | 43200 | > th | dose independent | rect. | 7 | 10 |
| 28 | 146.80 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 7 | 10 |
| 29 | 146.80 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 13 | 4 |
| 33 | 146.82 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 6 | 4 |
| 41 | 146.84 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 6 | 4 |
| 47 | 146.87 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 16 | 1 |
| 49 | 146.89 | radiation | 1.0 | 43200 | > th | dose independent | rect. | 10 | 7 |
| 52 | 146.92 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 10 | 7 |
| 115 | 147.38 | temperature | 20.0 | 270 | < th | dose independent | rect. | 16 | 13 |
| 116 | 147.40 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 9 | 5 |
| 121 | 147.45 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 6 | 11 |
| 158 | 147.80 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 6 | 2 |
| 171 | 148.01 | radiation | 1.0 | 43200 | > th | dose independent | rect. | 12 | 1 |
| 173 | 148.02 | temperature | 20.0 | 90 | > th | dose independent | rect. | 7 | 22 |
| 185 | 148.16 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 11 | 3 |
| 187 | 148.17 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 9 | 5 |
| 193 | 148.19 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 12 | 1 |
| 194 | 148.20 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 10 | 4 |
| 197 | 148.21 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 12 | 1 |
| 203 | 148.23 | temperature | 20.0 | 270 | < th | dose independent | sin | 13 | NA |
| 205 | 148.25 | temperature | 20.0 | 720 | > th | dose independent | rect. | 14 | 5 |
| 206 | 148.25 | temperature | 20.0 | 270 | > th | dose independent | rect. | 15 | 11 |
| 241 | 148.44 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 21 | 8 |
| 289 | 148.66 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 4 | 1 |
| 303 | 148.76 | temperature | 20.0 | 43200 | > th | dose independent | rect. | 6 | 2 |
| 310 | 148.78 | temperature | 20.0 | 43200 | > th | dose independent | rect. | 5 | 4 |
| 313 | 148.81 | temperature | 20.0 | 10 | > th | dose independent | rect. | 7 | 22 |
| 314 | 148.82 | temperature | 20.0 | 43200 | < th | dose independent | rect. | 5 | 4 |
| 318 | 148.85 | temperature | 20.0 | 43200 | < th | dose independent | rect. | 6 | 2 |
| 357 | 149.08 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 372 | 149.10 | temperature | 20.0 | 43200 | < th | dose independent | rect. | 22 | 16 |
| 381 | 149.12 | temperature | 20.0 | 43200 | < th | dose independent | sin | 5 | NA |
| 404 | 149.16 | temperature | 20.0 | 43200 | > th | dose independent | sin | 4 | NA |
| 419 | 149.17 | radiation | 40.0 | 4320 | < th | dose dependent | rect. | 7 | 1 |
| 422 | 149.18 | temperature | 20.0 | 43200 | < th | dose independent | rect. | 1 | 13 |
| 426 | 149.18 | temperature | 20.0 | 43200 | < th | dose independent | rect. | 17 | 17 |
| 430 | 149.18 | temperature | 20.0 | 43200 | > th | dose independent | rect. | 22 | 19 |
| 438 | 149.18 | temperature | 25.0 | 43200 | < th | dose dependent | rect. | 9 | 1 |
| 444 | 149.19 | temperature | 20.0 | 43200 | > th | dose independent | rect. | 21 | 17 |
| 502 | 149.22 | temperature | 20.0 | 43200 | > th | dose independent | rect. | 16 | 19 |
| 548 | 149.24 | temperature | 20.0 | 43200 | > th | dose independent | rect. | 1 | 13 |
| 637 | 149.27 | temperature | 20.0 | 43200 | < th | dose independent | no | NA | NA |
| 638 | 149.27 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 12 | 1 |
| 677 | 149.29 | temperature | 20.0 | 43200 | > th | dose independent | no | NA | NA |
| 679 | 149.29 | temperature | 20.0 | 43200 | < th | dose independent | rect. | 22 | 2 |
| 682 | 149.29 | temperature | 20.0 | 43200 | > th | dose independent | rect. | 4 | 23 |
| 684 | 149.29 | temperature | 20.0 | 43200 | < th | dose independent | rect. | 4 | 23 |
| 721 | 149.31 | temperature | 20.0 | 43200 | > th | dose independent | rect. | 1 | 23 |
| 723 | 149.31 | temperature | 20.0 | 43200 | < th | dose independent | rect. | 1 | 23 |
| 775 | 149.36 | radiation | 40.0 | 43200 | < th | dose independent | rect. | 16 | 3 |
| 824 | 149.40 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 942 | 149.52 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 4 | 13 |
| 955 | 149.54 | wind | 1.0 | 14400 | > th | dose independent | rect. | 22 | 4 |