BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0474100 Os09g0474100|AK121418
(428 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os09g0474100 Similar to TA1 protein (Fragment) 756 0.0
Os08g0487700 Similar to TA1 protein (Fragment) 273 1e-73
Os06g0275600 Similar to TA1 protein (Fragment) 230 1e-60
Os03g0728900 Basic helix-loop-helix dimerisation region bHL... 175 6e-44
Os01g0915600 Similar to TA1 protein (Fragment) 168 6e-42
Os09g0501600 Similar to MYC1 165 7e-41
Os04g0350700 Similar to Phytochrome-interacting factor 4 (B... 164 1e-40
Os08g0524800 Similar to TA1 protein (Fragment) 161 9e-40
Os02g0705500 Basic helix-loop-helix dimerisation region bHL... 152 4e-37
Os03g0802900 Similar to MYC1 148 9e-36
Os08g0536800 Similar to TA1 protein (Fragment) 147 2e-35
Os09g0510500 Similar to Phytochrome-interacting factor 4 (B... 142 4e-34
Os05g0103000 Similar to MYC1 138 6e-33
Os06g0184000 94 2e-19
Os06g0193400 Similar to Helix-loop-helix protein homolog 91 1e-18
Os03g0797600 Similar to Helix-loop-helix protein homolog 90 3e-18
Os09g0417400 Basic helix-loop-helix dimerisation region bHL... 89 6e-18
Os06g0613500 Similar to Helix-loop-helix protein homolog 88 1e-17
Os03g0782500 Basic helix-loop-helix dimerisation region bHL... 78 1e-14
Os09g0487900 Basic helix-loop-helix dimerisation region bHL... 74 3e-13
Os01g0286100 Basic helix-loop-helix dimerisation region bHL... 72 9e-13
Os12g0610200 Similar to Phytochrome-interacting factor 3 (P... 72 9e-13
Os08g0506700 Basic helix-loop-helix dimerisation region bHL... 72 1e-12
Os07g0143200 Basic helix-loop-helix dimerisation region bHL... 70 4e-12
Os06g0164400 Basic helix-loop-helix dimerisation region bHL... 69 7e-12
Os02g0795800 65 7e-11
>Os09g0474100 Similar to TA1 protein (Fragment)
Length = 428
Score = 756 bits (1952), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 386/428 (90%), Positives = 386/428 (90%)
Query: 1 MDMSESSEKGMESNASSGPGNGIPVEWQSQFSSAFACQPSVAAQHQQHAMMDSFAAASAG 60
MDMSESSEKGMESNASSGPGNGIPVEWQSQFSSAFACQPSVAAQHQQHAMMDSFAAASAG
Sbjct: 1 MDMSESSEKGMESNASSGPGNGIPVEWQSQFSSAFACQPSVAAQHQQHAMMDSFAAASAG 60
Query: 61 LWXXXXXXXXXXXXXPPRGAGFLAPVPGFLQQGLGHFPVDSGFIERAARSTCFXXXXXXX 120
LW PPRGAGFLAPVPGFLQQGLGHFPVDSGFIERAARSTCF
Sbjct: 61 LWASSDVVSAMSSAAPPRGAGFLAPVPGFLQQGLGHFPVDSGFIERAARSTCFGGGMMAG 120
Query: 121 XXXXXXDQAMGDAFGGTAEGLMDHHRNVGNDKAEEFAGNGHDEVPSSEVAXXXXXXXXXX 180
DQAMGDAFGGTAEGLMDHHRNVGNDKAEEFAGNGHDEVPSSEVA
Sbjct: 121 GPYGAADQAMGDAFGGTAEGLMDHHRNVGNDKAEEFAGNGHDEVPSSEVAGGDCSSKGSD 180
Query: 181 XXXXXXPNEVMGTDQVHSSNLPSDSANESVHSKDKGEESSPATTNGGKSKGKGAKETSES 240
PNEVMGTDQVHSSNLPSDSANESVHSKDKGEESSPATTNGGKSKGKGAKETSES
Sbjct: 181 SKKRRRPNEVMGTDQVHSSNLPSDSANESVHSKDKGEESSPATTNGGKSKGKGAKETSES 240
Query: 241 QKEEYIHVRARRGQATNSHSLAERLRREKISERMKLLQDLVPGCSKVTGKAVMLDEIINY 300
QKEEYIHVRARRGQATNSHSLAERLRREKISERMKLLQDLVPGCSKVTGKAVMLDEIINY
Sbjct: 241 QKEEYIHVRARRGQATNSHSLAERLRREKISERMKLLQDLVPGCSKVTGKAVMLDEIINY 300
Query: 301 VQSLQRQVEFLSMKLATVNPRLDLNIEGLLSKDLLRFPGVPSSSIGFSPEMMHPQLQLSQ 360
VQSLQRQVEFLSMKLATVNPRLDLNIEGLLSKDLLRFPGVPSSSIGFSPEMMHPQLQLSQ
Sbjct: 301 VQSLQRQVEFLSMKLATVNPRLDLNIEGLLSKDLLRFPGVPSSSIGFSPEMMHPQLQLSQ 360
Query: 361 PGLIHGGTAGMANPDVFRRIIQAQLGAKDGSQMPHSLNGSFSDVSQMAYPSLGSQDLSIR 420
PGLIHGGTAGMANPDVFRRIIQAQLGAKDGSQMPHSLNGSFSDVSQMAYPSLGSQDLSIR
Sbjct: 361 PGLIHGGTAGMANPDVFRRIIQAQLGAKDGSQMPHSLNGSFSDVSQMAYPSLGSQDLSIR 420
Query: 421 PSQDGFQM 428
PSQDGFQM
Sbjct: 421 PSQDGFQM 428
>Os08g0487700 Similar to TA1 protein (Fragment)
Length = 365
Score = 273 bits (699), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 156/254 (61%), Positives = 185/254 (72%), Gaps = 14/254 (5%)
Query: 188 NEVMGTDQVHSSNLPSDSANESVHSKD-KGEESSPATTNGGKSKGKGAK--ETSESQKEE 244
+E+ GTD ++SN +DS NE+ SKD GE P T K KG + E+QKE
Sbjct: 113 DEIAGTDHANASNALADSGNETECSKDVNGEVIGPPATAAAGGKSKGKGAKDAGEAQKEG 172
Query: 245 YIHVRARRGQATNSHSLAERLRREKISERMKLLQDLVPGCSKVTGKAVMLDEIINYVQSL 304
Y HVRAR+GQATN+HSLAERLRREKISERMKLLQDLVPGCSKVTGKA+MLDEIINYVQSL
Sbjct: 173 YSHVRARKGQATNNHSLAERLRREKISERMKLLQDLVPGCSKVTGKALMLDEIINYVQSL 232
Query: 305 QRQVEFLSMKLATVNPRLDLNIEGLL--SKDLLRFPGVPSSS---IGFSPEMMHPQLQLS 359
QRQVEFLSMKL+ VNPR+DL+IE L+ SKD+LRFPG PSS+ FS EMM P LQLS
Sbjct: 233 QRQVEFLSMKLSAVNPRIDLDIESLVNNSKDVLRFPGQPSSAPMGFSFSTEMM-PGLQLS 291
Query: 360 QPGLIHGGTAGMANPDVFRRIIQAQ----LGAKDGSQMPHSLNGSFSDVSQMAYPS-LGS 414
+PG++ GG GM NPDVF ++Q Q GA QM +L+GSF + +QM YP + S
Sbjct: 292 RPGILQGGVHGMINPDVFTSLMQKQQQNDKGAFREPQMHQTLDGSFRNTAQMPYPQVMSS 351
Query: 415 QDLSIRPSQDGFQM 428
++LSIR QDGF M
Sbjct: 352 EELSIRQDQDGFHM 365
>Os06g0275600 Similar to TA1 protein (Fragment)
Length = 437
Score = 230 bits (587), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 123/203 (60%), Positives = 145/203 (71%), Gaps = 9/203 (4%)
Query: 214 DKGEESSPATTNGGKSKGKGAKETSESQKEEYIHVRARRGQATNSHSLAERLRREKISER 273
D+ E ++ GKS GK K+ + S KE+YIHVRARRGQATNSHSLAER+RREKISER
Sbjct: 226 DEKGEPKRSSVASGKSSGKQIKDNAGSPKEDYIHVRARRGQATNSHSLAERVRREKISER 285
Query: 274 MKLLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPRLDLNIEGLLSKD 333
MK LQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVEFLSMKLA+VNP LD NIE +LSKD
Sbjct: 286 MKYLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVEFLSMKLASVNPTLDFNIERILSKD 345
Query: 334 LLRFPGVP-SSSIGFSPEMMHPQLQLSQPGLIHGGTAGMANP-DVFRRIIQAQLGAKDG- 390
+ + G SS+ GF P+++HP+L P G + NP D F R+I A LG
Sbjct: 346 IFQCRGTTASSAFGFFPDIVHPRLH--PPKYTQVGMPSIVNPTDAFGRVIHAPLGTNSAF 403
Query: 391 ----SQMPHSLNGSFSDVSQMAY 409
QMP++LNG F DV +M +
Sbjct: 404 KEPKHQMPNNLNGEFQDVIEMPF 426
>Os03g0728900 Basic helix-loop-helix dimerisation region bHLH domain containing
protein
Length = 327
Score = 175 bits (444), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 94/141 (66%), Positives = 108/141 (76%), Gaps = 13/141 (9%)
Query: 242 KEEYIHVRARRGQATNSHSLAERLRREKISERMKLLQDLVPGCSKVTGKAVMLDEIINYV 301
KE+Y+HVRA+RGQATNSHSLAERLRR+KISERMKLLQDLVPGCSK+TGKAVMLDEIINYV
Sbjct: 141 KEDYVHVRAKRGQATNSHSLAERLRRKKISERMKLLQDLVPGCSKITGKAVMLDEIINYV 200
Query: 302 QSLQRQVEFLSMKLATVNPRLDLNIEGLLSKDL-------LRFPGV-PSSS---IGFSPE 350
QSLQRQVEFLSMKLATVNP L +IE +LSK + L F GV P SS F+
Sbjct: 201 QSLQRQVEFLSMKLATVNPELSFDIEQILSKQMMLSQDRHLAFYGVDPGSSALVAHFNQG 260
Query: 351 MMHPQL--QLSQPGLIHGGTA 369
+M P++ +S P + GT
Sbjct: 261 IMQPEMLCNVSNPADVLQGTT 281
>Os01g0915600 Similar to TA1 protein (Fragment)
Length = 481
Score = 168 bits (426), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 113/257 (43%), Positives = 140/257 (54%), Gaps = 22/257 (8%)
Query: 94 LGHFPVDSGFIERAARSTCFXXXXXXXXXXXXXDQ----AMGDAFGGTAEGLMDHHRNVG 149
L F D GF ERAAR + F + DA A M+ +G
Sbjct: 114 LDQFLADPGFAERAARLSGFDARGGGGGGGYGGAGPAQFGLPDAGAAGASKEME----LG 169
Query: 150 NDKAEEFAGN---GHDEVPSSEVAXXXXXXXXXXXXXXXXPNEVMGTDQVH--------S 198
N + E + G E+P + A + M T
Sbjct: 170 NTRDESSVSDPAPGGAEIP-PKGASDGNARKRKASGKGKGKDSPMSTSAAKEDSSGKRCK 228
Query: 199 SNLPSDSANESVHSKDKGEESSPATTNGGKSKGKGAKETSESQKEEYIHVRARRGQATNS 258
S S++A E K K +S+ + GGK +GK + ++YIHVRARRG+AT+S
Sbjct: 229 STEESNAAAEENSGKGKAAQSN-SENGGGKKQGKDSSSKPPEPPKDYIHVRARRGEATDS 287
Query: 259 HSLAERLRREKISERMKLLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATV 318
HSLAER+RREKIS+RMKLLQDLVPGC+KV GKAVMLDEIINYVQSLQRQVEFLSMKLATV
Sbjct: 288 HSLAERVRREKISQRMKLLQDLVPGCNKVVGKAVMLDEIINYVQSLQRQVEFLSMKLATV 347
Query: 319 NPRLDL-NIEGLLSKDL 334
NP+LD N+ LL+KD+
Sbjct: 348 NPQLDFNNLPNLLAKDM 364
>Os09g0501600 Similar to MYC1
Length = 366
Score = 165 bits (417), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 79/117 (67%), Positives = 98/117 (83%), Gaps = 1/117 (0%)
Query: 230 KGKGAKETSESQKEEYIHVRARRGQATNSHSLAERLRREKISERMKLLQDLVPGCSKVTG 289
KGK + + + ++Y+HVRARRGQAT+SHSLAER+RREKIS+RMK+LQDLVPGC+KV G
Sbjct: 156 KGKNSSKPAAEPPKDYVHVRARRGQATDSHSLAERVRREKISQRMKVLQDLVPGCNKVVG 215
Query: 290 KAVMLDEIINYVQSLQRQVEFLSMKLATVNPRLDL-NIEGLLSKDLLRFPGVPSSSI 345
KA+MLDEIINYVQSLQ+QVEFLSMKLATVNP+LD N+ LL KD+ + G +S+
Sbjct: 216 KALMLDEIINYVQSLQQQVEFLSMKLATVNPQLDFGNLSTLLQKDMFQSCGPSVNSV 272
>Os04g0350700 Similar to Phytochrome-interacting factor 4 (Basic helix-loop-helix
protein 9) (bHLH9) (AtbHLH009) (Short under red-light 2)
Length = 263
Score = 164 bits (415), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 77/103 (74%), Positives = 91/103 (88%), Gaps = 2/103 (1%)
Query: 243 EEYIHVRARRGQATNSHSLAERLRREKISERMKLLQDLVPGCSKVTGKAVMLDEIINYVQ 302
++YIHVRARRGQAT+SHSLAER+RRE+ISERMKLLQ LVPGC+K+TGKA+MLDEIINYVQ
Sbjct: 76 KDYIHVRARRGQATDSHSLAERVRRERISERMKLLQSLVPGCNKITGKALMLDEIINYVQ 135
Query: 303 SLQRQVEFLSMKLATVNPRLDLNIEGLLSKDL--LRFPGVPSS 343
SLQRQVEFLSMKLAT+NP+LD + + SKD+ + P PSS
Sbjct: 136 SLQRQVEFLSMKLATMNPQLDFDSHYMPSKDMSHMPVPAYPSS 178
>Os08g0524800 Similar to TA1 protein (Fragment)
Length = 405
Score = 161 bits (407), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 84/140 (60%), Positives = 104/140 (74%), Gaps = 13/140 (9%)
Query: 243 EEYIHVRARRGQATNSHSLAERLRREKISERMKLLQDLVPGCSKVTGKAVMLDEIINYVQ 302
++Y+HVRARRGQAT+SHSLAER+RRE+IS+RMK+LQDLVPGC+KV GKA+MLDEIINYVQ
Sbjct: 199 KDYVHVRARRGQATDSHSLAERVRRERISQRMKVLQDLVPGCNKVIGKALMLDEIINYVQ 258
Query: 303 SLQRQVEFLSMKLATVNPRLDLNIEGLLSKDLLRFPGVPSSSIGFSPEMMHPQLQLSQPG 362
SLQRQVEFLSMKLATVNP N+ LL KD+ + G PS+S FS E + + ++ G
Sbjct: 259 SLQRQVEFLSMKLATVNPLDFSNLPTLLQKDMFQACG-PSASSVFSLESSNSAFRFAEQG 317
Query: 363 LIHGGTAGMANPDVFRRIIQ 382
DVF++ Q
Sbjct: 318 ------------DVFQQFAQ 325
>Os02g0705500 Basic helix-loop-helix dimerisation region bHLH domain containing
protein
Length = 361
Score = 152 bits (384), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 78/124 (62%), Positives = 93/124 (75%), Gaps = 6/124 (4%)
Query: 212 SKDKGEESSPATTNGGKSKGKGAKETSESQKEEYIHVRARRGQATNSHSLAERLRREKIS 271
+K K E +SP S A + QK +YIHVRARRGQAT+SHSLAER+RRE+IS
Sbjct: 133 AKKKAEVASPK-----DSPATSASTVTAGQKTDYIHVRARRGQATDSHSLAERVRRERIS 187
Query: 272 ERMKLLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPRLDLNI-EGLL 330
ERM+ LQ+LVPGC+KVTGKA MLDEIINYVQSLQ+QVEFLSMK+A NP ++ NI E L
Sbjct: 188 ERMRYLQELVPGCNKVTGKAGMLDEIINYVQSLQKQVEFLSMKIAASNPVVNFNIVEDLF 247
Query: 331 SKDL 334
+ L
Sbjct: 248 GRQL 251
>Os03g0802900 Similar to MYC1
Length = 265
Score = 148 bits (373), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 69/93 (74%), Positives = 79/93 (84%)
Query: 242 KEEYIHVRARRGQATNSHSLAERLRREKISERMKLLQDLVPGCSKVTGKAVMLDEIINYV 301
K++YIHVRARRGQAT+SHSLAER RREKISERMK+LQDLVPGC+KV GKA +LDEIINY+
Sbjct: 130 KQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKASVLDEIINYI 189
Query: 302 QSLQRQVEFLSMKLATVNPRLDLNIEGLLSKDL 334
Q+LQRQVEFLSMKL VN ++ IE KD
Sbjct: 190 QALQRQVEFLSMKLEAVNAHVNNGIEAFPPKDF 222
>Os08g0536800 Similar to TA1 protein (Fragment)
Length = 309
Score = 147 bits (370), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 74/121 (61%), Positives = 94/121 (77%), Gaps = 6/121 (4%)
Query: 205 SANESVHSKDKGEESSPATTNGGKSKGKGAKETSESQKEE---YIHVRARRGQATNSHSL 261
+A +S HSKD ++ + GK K +E S ++ E YIHVRARRGQAT+SHSL
Sbjct: 98 AAEDSAHSKDSCKD---GKSRRGKKASKEVEEKSTTEDEPPKGYIHVRARRGQATDSHSL 154
Query: 262 AERLRREKISERMKLLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPR 321
AER+RRE+ISERM++LQ LVPGC KVTGKA++LDEIINYVQSLQ QVEFLSM++A+++P
Sbjct: 155 AERVRRERISERMRMLQALVPGCDKVTGKALILDEIINYVQSLQNQVEFLSMRIASMSPV 214
Query: 322 L 322
L
Sbjct: 215 L 215
>Os09g0510500 Similar to Phytochrome-interacting factor 4 (Basic helix-loop-helix
protein 9) (bHLH9) (AtbHLH009) (Short under red-light 2)
Length = 282
Score = 142 bits (358), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 75/119 (63%), Positives = 91/119 (76%), Gaps = 15/119 (12%)
Query: 209 SVHSKDKGEESSPATTNGGKSKGKGAKETSESQKEE-----YIHVRARRGQATNSHSLAE 263
S HSK+ E NG K +G K+ S Q EE +IHVRARRGQAT+SHSLAE
Sbjct: 73 SAHSKEAKE-------NGRK---RGGKKHSRDQMEEEAPQGFIHVRARRGQATDSHSLAE 122
Query: 264 RLRREKISERMKLLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPRL 322
R+RRE+ISERM++LQ LVPGC KVTGKA++LDEIINYVQSLQ QVEFLSM++A+++P L
Sbjct: 123 RVRRERISERMRMLQALVPGCDKVTGKALILDEIINYVQSLQNQVEFLSMRIASLSPVL 181
>Os05g0103000 Similar to MYC1
Length = 339
Score = 138 bits (348), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 65/78 (83%), Positives = 74/78 (94%)
Query: 245 YIHVRARRGQATNSHSLAERLRREKISERMKLLQDLVPGCSKVTGKAVMLDEIINYVQSL 304
YIHVRARRGQAT+SHSLAER+RREKISERMK+LQ LVPGC KVTGKA+MLDEII+YVQSL
Sbjct: 177 YIHVRARRGQATDSHSLAERVRREKISERMKMLQSLVPGCDKVTGKALMLDEIISYVQSL 236
Query: 305 QRQVEFLSMKLATVNPRL 322
Q QVEFLSMKLA+++P +
Sbjct: 237 QNQVEFLSMKLASLSPLM 254
>Os06g0184000
Length = 430
Score = 94.4 bits (233), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 53/95 (55%), Positives = 67/95 (70%), Gaps = 11/95 (11%)
Query: 219 SSPATTNGGKSKGKGAKETSESQKEEYIHVRARRGQATNSHSLAERLRREKISERMKLLQ 278
++P T++GG G Q+ VRARRGQAT+ HS+AERLRRE+I+ERMK LQ
Sbjct: 195 TAPVTSSGG-----GGTAPPRQQR-----VRARRGQATDPHSIAERLRRERIAERMKSLQ 244
Query: 279 DLVPGCSKVTGKAVMLDEIINYVQSLQRQVEFLSM 313
+LVP +K T KA MLDEII+YV+ LQ QV+ LSM
Sbjct: 245 ELVPNANK-TDKASMLDEIIDYVKFLQLQVKVLSM 278
>Os06g0193400 Similar to Helix-loop-helix protein homolog
Length = 478
Score = 91.3 bits (225), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 47/66 (71%), Positives = 53/66 (80%), Gaps = 1/66 (1%)
Query: 248 VRARRGQATNSHSLAERLRREKISERMKLLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQ 307
RARRGQAT+ HS+AERLRREKISERMK LQ LVP +K KA MLDEII+YV+ LQ Q
Sbjct: 316 TRARRGQATDPHSIAERLRREKISERMKNLQVLVPNSNKA-DKASMLDEIIDYVKFLQLQ 374
Query: 308 VEFLSM 313
V+ LSM
Sbjct: 375 VKVLSM 380
>Os03g0797600 Similar to Helix-loop-helix protein homolog
Length = 294
Score = 90.1 bits (222), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 43/67 (64%), Positives = 56/67 (83%), Gaps = 1/67 (1%)
Query: 247 HVRARRGQATNSHSLAERLRREKISERMKLLQDLVPGCSKVTGKAVMLDEIINYVQSLQR 306
VRARRGQAT+ HS+AERLRRE+I+ERM+ LQ+LVP +K T +A MLDEI++YV+ L+
Sbjct: 132 KVRARRGQATDPHSIAERLRRERIAERMRALQELVPNTNK-TDRAAMLDEILDYVKFLRL 190
Query: 307 QVEFLSM 313
QV+ LSM
Sbjct: 191 QVKVLSM 197
>Os09g0417400 Basic helix-loop-helix dimerisation region bHLH domain containing
protein
Length = 499
Score = 89.0 bits (219), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 44/64 (68%), Positives = 54/64 (84%), Gaps = 2/64 (3%)
Query: 248 VRARRGQATNSHSLAERLRREKISERMKLLQDLVPGCSKV--TGKAVMLDEIINYVQSLQ 305
VRARRGQAT+ HS+AERLRRE+I+ERMK LQ+LVP +K+ T KA MLDEII+YV+ LQ
Sbjct: 250 VRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKLMQTDKASMLDEIIDYVKFLQ 309
Query: 306 RQVE 309
QV+
Sbjct: 310 LQVK 313
>Os06g0613500 Similar to Helix-loop-helix protein homolog
Length = 154
Score = 87.8 bits (216), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 41/68 (60%), Positives = 56/68 (82%), Gaps = 1/68 (1%)
Query: 274 MKLLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPRLDL-NIEGLLSK 332
M+LL++LVPGCSKV+G A++LDEIIN+VQSLQRQVE+LSM+LA VNPR+D ++ L+
Sbjct: 1 MELLKELVPGCSKVSGTALVLDEIINHVQSLQRQVEYLSMRLAAVNPRVDFGGLDNFLTT 60
Query: 333 DLLRFPGV 340
+ R G+
Sbjct: 61 ECGRITGL 68
>Os03g0782500 Basic helix-loop-helix dimerisation region bHLH domain containing
protein
Length = 410
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 47/113 (41%), Positives = 70/113 (61%), Gaps = 9/113 (7%)
Query: 201 LPSDSANESVHSKDKGEESSPATTNGGKSKGKGAKETSESQKEEYIHVRARRGQATNSHS 260
LPS+SA S H K KG E S +S+ + T E++ + RR +A H+
Sbjct: 175 LPSESA--SAH-KRKGREDS-----DSRSEDAECEATEETKSSSRRYGSKRRTRAAEVHN 226
Query: 261 LAERLRREKISERMKLLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVEFLSM 313
L+ER RR++I+E+M+ LQ+L+P C+K T KA +LDE I Y++SLQ QV+ + M
Sbjct: 227 LSERRRRDRINEKMRALQELIPHCNK-TDKASILDEAIEYLKSLQMQVQIMWM 278
>Os09g0487900 Basic helix-loop-helix dimerisation region bHLH domain containing
protein
Length = 401
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 33/65 (50%), Positives = 49/65 (75%)
Query: 248 VRARRGQATNSHSLAERLRREKISERMKLLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQ 307
+RA+RG AT+ S+AER+RR +ISER++ LQ+LVP K T A MLD ++Y++ LQ+Q
Sbjct: 319 IRAKRGCATHPRSIAERVRRTRISERIRKLQELVPNMEKQTNTADMLDLAVDYIKELQKQ 378
Query: 308 VEFLS 312
V+ L+
Sbjct: 379 VKVLN 383
>Os01g0286100 Basic helix-loop-helix dimerisation region bHLH domain containing
protein
Length = 637
Score = 72.0 bits (175), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 51/74 (68%), Gaps = 1/74 (1%)
Query: 251 RRGQATNSHSLAERLRREKISERMKLLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVEF 310
+R + H+L+ER RR++I+E+M+ LQ+L+P C+K+ KA MLDE I Y+++LQ QV+
Sbjct: 381 KRSRTAEVHNLSERRRRDRINEKMRALQELIPNCNKID-KASMLDEAIEYLKTLQLQVQM 439
Query: 311 LSMKLATVNPRLDL 324
+SM P + L
Sbjct: 440 MSMGTGLCIPPMLL 453
>Os12g0610200 Similar to Phytochrome-interacting factor 3 (Phytochrome-associated
protein 3) (Basic helix-loop-helix protein 8) (bHLH8)
(AtbHLH008)
Length = 445
Score = 71.6 bits (174), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 47/135 (34%), Positives = 68/135 (50%), Gaps = 20/135 (14%)
Query: 193 TDQVHSSNLPSDSANESVHSKDKGEESSPATTNGGKSKGKGAKETSESQKEEYIH----- 247
T V SS++ S S +D A GGK K +G E +
Sbjct: 199 TATVASSSMRSRSCTAKAEPRDVA-----AAGVGGKRKQRGGAAMESGSPSEDVEFESAA 253
Query: 248 ---------VRARRGQATNSHSLAERLRREKISERMKLLQDLVPGCSKVTGKAVMLDEII 298
A+R +A H+L+ER RR++I+E+MK LQ+L+P C+K T KA MLDE I
Sbjct: 254 ATCSPAQKTTTAKRRRAAEVHNLSERRRRDRINEKMKALQELIPHCNK-TDKASMLDEAI 312
Query: 299 NYVQSLQRQVEFLSM 313
Y++SLQ Q++ + M
Sbjct: 313 EYLKSLQLQLQMMWM 327
>Os08g0506700 Basic helix-loop-helix dimerisation region bHLH domain containing
protein
Length = 399
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 33/65 (50%), Positives = 49/65 (75%)
Query: 248 VRARRGQATNSHSLAERLRREKISERMKLLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQ 307
+RA+RG AT+ S+AER+RR +ISER++ LQ+LVP K T A MLD ++Y++ LQ+Q
Sbjct: 318 IRAKRGCATHPRSIAERVRRTRISERIRKLQELVPNMDKQTNTADMLDLAVDYIKDLQKQ 377
Query: 308 VEFLS 312
V+ L+
Sbjct: 378 VKGLN 382
>Os07g0143200 Basic helix-loop-helix dimerisation region bHLH domain containing
protein
Length = 447
Score = 69.7 bits (169), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 33/68 (48%), Positives = 49/68 (72%), Gaps = 1/68 (1%)
Query: 251 RRGQATNSHSLAERLRREKISERMKLLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVEF 310
RR +A H+L+ER RR++I+E+++ LQ+LVP C+K T KA +LDE I Y++SLQ QV+
Sbjct: 226 RRTRAAEVHNLSERRRRDRINEKLRALQELVPHCNK-TDKASILDEAIEYLKSLQMQVQI 284
Query: 311 LSMKLATV 318
+ M V
Sbjct: 285 MWMTTGIV 292
>Os06g0164400 Basic helix-loop-helix dimerisation region bHLH domain containing
protein
Length = 188
Score = 68.9 bits (167), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 33/65 (50%), Positives = 47/65 (72%), Gaps = 1/65 (1%)
Query: 250 ARRGQATNSHSLAERLRREKISERMKLLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVE 309
++R +A H+L+E+ RR KI+E+MK LQ L+P +K T KA MLDE I Y++ LQ QV+
Sbjct: 22 SKRSRAAEVHNLSEKRRRSKINEKMKALQSLIPNSNK-TDKASMLDEAIEYLKQLQLQVQ 80
Query: 310 FLSMK 314
LSM+
Sbjct: 81 MLSMR 85
>Os02g0795800
Length = 463
Score = 65.5 bits (158), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 39/80 (48%), Positives = 48/80 (60%), Gaps = 23/80 (28%)
Query: 256 TNSHSLAER----------------------LRREKISERMKLLQDLVPGCSKVTGKAVM 293
T+ HS+AER LRRE+I+ERMK LQ+LVP +K T KA M
Sbjct: 220 TDPHSIAERVYHSPTTFPFSPPFFIASMPCCLRRERIAERMKALQELVPNANK-TDKASM 278
Query: 294 LDEIINYVQSLQRQVEFLSM 313
LDEII+YV+ LQ QV+ LSM
Sbjct: 279 LDEIIDYVKFLQLQVKVLSM 298
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.312 0.128 0.368
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 13,693,643
Number of extensions: 554585
Number of successful extensions: 1743
Number of sequences better than 1.0e-10: 26
Number of HSP's gapped: 1744
Number of HSP's successfully gapped: 26
Length of query: 428
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 324
Effective length of database: 11,605,545
Effective search space: 3760196580
Effective search space used: 3760196580
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 157 (65.1 bits)