BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0530100 Os04g0530100|AK107184
(323 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0530100 Similar to Beta-expansin 1 precursor (AtEXPB1)... 620 e-178
Os04g0552200 Beta-expansin 5 108 6e-24
Os02g0658800 Beta-expansin 106 3e-23
Os05g0246300 Expansin/Lol pI family protein 105 5e-23
Os04g0552000 Expansin/Lol pI family protein 101 8e-22
Os02g0658600 Similar to Beta-expansin (Fragment) 99 3e-21
Os03g0645000 Beta-expansin 89 4e-18
Os10g0555700 Beta-expansin 79 4e-15
Os10g0555900 Beta-expansin precursor 78 9e-15
Os10g0548600 Beta-expansin precursor 77 1e-14
Os03g0102700 Beta-expansin precursor 77 2e-14
Os10g0556100 beta-expansin EXPB4 [Oryza sativa (japonica cu... 76 3e-14
AK064012 76 3e-14
Os10g0555600 Beta-expansin precursor 75 5e-14
Os03g0106800 Beta-expansin precursor (Beta-expansin OsEXPB10) 74 2e-13
Os03g0106900 Beta-expansin precursor (Beta-expansin 1) 72 4e-13
Os03g0106500 Beta-expansin precursor (Beta-expansin 1) 72 4e-13
Os10g0535900 71 1e-12
Os03g0132200 Expansin-like protein A 67 1e-11
Os01g0274500 Similar to Alpha-expansin 2 67 2e-11
Os06g0621900 Similar to Alpha-expansin OsEXPA16 (Fragment) 66 3e-11
Os01g0823100 Alpha-expansin OsEXPA2 65 5e-11
Os06g0725300 Expansin/Lol pI family protein 65 5e-11
>Os04g0530100 Similar to Beta-expansin 1 precursor (AtEXPB1) (At-EXPB1)
(Ath-ExpBeta-1.5)
Length = 323
Score = 620 bits (1598), Expect = e-178, Method: Compositional matrix adjust.
Identities = 310/323 (95%), Positives = 310/323 (95%)
Query: 1 LRPNSWRPSSSCTLQSSIVQFGIAIGDNFFVGFNQSKTFFLSYFSGGACGYGSLVDVVPM 60
LRPNSWRPSSSCTLQSSIVQFGIAIGDNFFVGFNQSKTFFLSYFSGGACGYGSLVDVVPM
Sbjct: 1 LRPNSWRPSSSCTLQSSIVQFGIAIGDNFFVGFNQSKTFFLSYFSGGACGYGSLVDVVPM 60
Query: 61 KARVGSVSPVLFKDGEGCGACYKVKCLDHGICSRRAVTVIVTDECPGGLCAFGRTHFDLS 120
KARVGSVSPVLFKDGEGCGACYKVKCLDHGICSRRAVTVIVTDECPGGLCAFGRTHFDLS
Sbjct: 61 KARVGSVSPVLFKDGEGCGACYKVKCLDHGICSRRAVTVIVTDECPGGLCAFGRTHFDLS 120
Query: 121 GAAFSRMAVAGAGGHLRDRGQLSVVYRSVQIYQDCVQVRREEHSLPCKRGLDELLAVTAG 180
GAAFSRMAVAGAGGHLRDRGQLSVVYRSVQIYQDCVQVRREEHSLPCKRGLDELLAVTAG
Sbjct: 121 GAAFSRMAVAGAGGHLRDRGQLSVVYRSVQIYQDCVQVRREEHSLPCKRGLDELLAVTAG 180
Query: 181 RVRGRPGRHWIHADKAGELSGVAGHEACVGGHVVPRAGPACRALLGEVDDAVGPEGAHGP 240
RVRGRPGRHWIHADKAGELSGVAGHEACVGGHVVPRAGPACRALLGEVDDAVGPEGAHGP
Sbjct: 181 RVRGRPGRHWIHADKAGELSGVAGHEACVGGHVVPRAGPACRALLGEVDDAVGPEGAHGP 240
Query: 241 GRHPQELEAHGHLHLAPQLRGRPLIGWGSAGPGPTFYRXXXXXXXXXXXXXTWQSVRQES 300
GRHPQELEAHGHLHLAPQLRGRPLIGWGSAGPGPTFYR TWQSVRQES
Sbjct: 241 GRHPQELEAHGHLHLAPQLRGRPLIGWGSAGPGPTFYRPGKLPGGPAKAGPTWQSVRQES 300
Query: 301 QASSIVMQLIILVGLIIHDSIHG 323
QASSIVMQLIILVGLIIHDSIHG
Sbjct: 301 QASSIVMQLIILVGLIIHDSIHG 323
>Os04g0552200 Beta-expansin 5
Length = 275
Score = 108 bits (270), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 56/135 (41%), Positives = 74/135 (54%), Gaps = 16/135 (11%)
Query: 46 GGACGYGSLVDVVPMKARVGSVSPVLFKDGEGCGACYKVKCLDHGICSRRAVTVIVTDEC 105
GGACGY S V P + + + P LFK+G+GCG+CY++KC + CS R VTV++TD C
Sbjct: 63 GGACGYQSAVGQRPFSSMIAAGGPSLFKNGKGCGSCYQIKCTGNRACSGRPVTVVITDSC 122
Query: 106 PGGLCAFGRTHFDLSGAAFSRMAVAGAGGHLRDRGQLSVVYRSVQIYQDCVQVRREEHSL 165
PGG+C HFD+SG AF MA G G LR G L + Y+ V
Sbjct: 123 PGGVCLNEAAHFDMSGTAFGAMANRGMGDRLRSAGVLKIQYKRV---------------- 166
Query: 166 PCKRGLDELLAVTAG 180
PC+ ++ V AG
Sbjct: 167 PCRFAMNVAFKVDAG 181
>Os02g0658800 Beta-expansin
Length = 292
Score = 106 bits (264), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 51/104 (49%), Positives = 65/104 (62%)
Query: 46 GGACGYGSLVDVVPMKARVGSVSPVLFKDGEGCGACYKVKCLDHGICSRRAVTVIVTDEC 105
GGACGY + V P + + + SP L+K G+GCGACY+VKC + CS + TV++TDEC
Sbjct: 82 GGACGYQTAVGQRPFSSMIAAGSPSLYKGGKGCGACYEVKCTTNAACSGQPATVVITDEC 141
Query: 106 PGGLCAFGRTHFDLSGAAFSRMAVAGAGGHLRDRGQLSVVYRSV 149
PGG+C G HFD+SG + MA G LR G L V YR V
Sbjct: 142 PGGICLAGAAHFDMSGTSMGAMAKPGMADKLRAAGILQVQYRRV 185
>Os05g0246300 Expansin/Lol pI family protein
Length = 264
Score = 105 bits (262), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 51/104 (49%), Positives = 63/104 (60%)
Query: 46 GGACGYGSLVDVVPMKARVGSVSPVLFKDGEGCGACYKVKCLDHGICSRRAVTVIVTDEC 105
GGACGY + VD P + + + SP ++K G GCG+CY+VKC + CS VTV++TDEC
Sbjct: 55 GGACGYQAAVDQAPFSSMIAAGSPSIYKSGLGCGSCYQVKCSGNSACSGNPVTVVLTDEC 114
Query: 106 PGGLCAFGRTHFDLSGAAFSRMAVAGAGGHLRDRGQLSVVYRSV 149
PGG C HFDLSG AF MA G LR G L + Y V
Sbjct: 115 PGGPCLSEPVHFDLSGTAFGAMANPGQADQLRAAGVLQIQYNRV 158
>Os04g0552000 Expansin/Lol pI family protein
Length = 264
Score = 101 bits (251), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 50/104 (48%), Positives = 61/104 (58%)
Query: 46 GGACGYGSLVDVVPMKARVGSVSPVLFKDGEGCGACYKVKCLDHGICSRRAVTVIVTDEC 105
GGACGY V P + + + SP ++K G GCG+CY+VKC + CS VTV++TDEC
Sbjct: 55 GGACGYQGAVFQAPFSSMIAAGSPSIYKSGLGCGSCYQVKCTGNSACSGNPVTVVLTDEC 114
Query: 106 PGGLCAFGRTHFDLSGAAFSRMAVAGAGGHLRDRGQLSVVYRSV 149
PGG C HFDLSG AF MA G LR G L + Y V
Sbjct: 115 PGGPCLSEPVHFDLSGTAFGAMANPGQADQLRAAGVLQIQYNRV 158
>Os02g0658600 Similar to Beta-expansin (Fragment)
Length = 273
Score = 99.4 bits (246), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 73/200 (36%), Positives = 96/200 (48%), Gaps = 31/200 (15%)
Query: 12 CTLQSSIVQF-------GIAIGDNFFVG-FNQSKTFFLSYFSGGACGYGSLVDVVPMKAR 63
C L+SS+ G +IG + G N S T GGACGY V P +
Sbjct: 20 CVLRSSVASVDHHRKLSGWSIGGATWYGPANGSGT------DGGACGYQGDVGQPPFNSM 73
Query: 64 VGSVSPVLFKDGEGCGACYKVKCLDHGICSRRAVTVIVTDECPGGLCAFGRTHFDLSGAA 123
+ + SP +++ G+GCG+CY+VKC + CS + VTV++TD CPGG C HFDLSG A
Sbjct: 74 IAAGSPSIYESGKGCGSCYQVKCSGNPSCSGKPVTVVLTDLCPGGACLEEPVHFDLSGTA 133
Query: 124 FSRMAVAGAGGHLRDRGQLSVVYRSVQIYQDCVQVRREEHSLPCK-RGLDELLAVTAGRV 182
F MA G LR+ G+L V Y V PCK +G+D V AG
Sbjct: 134 FGAMAKPGQDDQLRNAGKLPVQYARV----------------PCKWQGVDIAFRVDAGSN 177
Query: 183 RGRPGRHWIHADKAGELSGV 202
+ D G+LS V
Sbjct: 178 QYYLAVLVEDEDGDGDLSAV 197
>Os03g0645000 Beta-expansin
Length = 313
Score = 89.0 bits (219), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 47/114 (41%), Positives = 62/114 (54%), Gaps = 9/114 (7%)
Query: 46 GGACGYGSLVDVVPMKARVGSVSPVLFKDGEGCGACYKVKCLDHGICSRRAVTVIVTDEC 105
GGACGY VD P +R+ + SP ++ G+GCG+CY+V C + CS VTV++TD+
Sbjct: 57 GGACGYQYAVDQPPFSSRIAAGSPYIYDSGKGCGSCYRVVCAGNEACSGIPVTVVITDQG 116
Query: 106 PG---------GLCAFGRTHFDLSGAAFSRMAVAGAGGHLRDRGQLSVVYRSVQ 150
PG G C HFD+SG AF MA G LR G L + Y V+
Sbjct: 117 PGGPCLEELVDGQCMNEAAHFDMSGTAFGAMARPGQADQLRGAGLLQIQYTRVE 170
>Os10g0555700 Beta-expansin
Length = 261
Score = 79.3 bits (194), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 54/158 (34%), Positives = 73/158 (46%), Gaps = 16/158 (10%)
Query: 45 SGGACGYGSLVDVVPMKARVGSVSPVLFKDGEGCGACYKVKCLDHGICSRRAVTVIVTDE 104
+GGACG+ + + P + + LF+DG+GCGACY+++C ++ CS + TVI+TD
Sbjct: 50 NGGACGFKN-TNQYPFMSMTSCGNEPLFQDGKGCGACYQIRCTNNPSCSGQPRTVIITDM 108
Query: 105 CPGGLCAFGRTHFDLSGAAFSRMAVAGAGGHLRDRGQLSVVYRSVQIYQD--CVQVRREE 162
R HFDLSG AF MA G LR G + + +R V Y V E
Sbjct: 109 ---NYYPVARYHFDLSGTAFGAMARPGLNDQLRHAGIIDIQFRRVPCYHRGLYVNFHVEA 165
Query: 163 HSLPC----------KRGLDELLAVTAGRVRGRPGRHW 190
S P K G L V G+P R W
Sbjct: 166 GSNPVYLAVLVEFANKDGTVVQLDVMESLPSGKPTRVW 203
>Os10g0555900 Beta-expansin precursor
Length = 268
Score = 78.2 bits (191), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 39/104 (37%), Positives = 58/104 (55%), Gaps = 4/104 (3%)
Query: 46 GGACGYGSLVDVVPMKARVGSVSPVLFKDGEGCGACYKVKCLDHGICSRRAVTVIVTDEC 105
GGACG+ + + P + + +FKDG+GCG+CY+++C++H CS TVI+TD
Sbjct: 62 GGACGFKN-TNQYPFSSMTSCGNEPIFKDGKGCGSCYQIRCVNHPACSGNPETVIITDM- 119
Query: 106 PGGLCAFGRTHFDLSGAAFSRMAVAGAGGHLRDRGQLSVVYRSV 149
+ HFDLSG AF MA G LR G + + ++ V
Sbjct: 120 --NYYPVSKYHFDLSGTAFGAMAKPGQNDQLRHAGIIDIQFKRV 161
>Os10g0548600 Beta-expansin precursor
Length = 269
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 60/106 (56%), Gaps = 4/106 (3%)
Query: 45 SGGACGYGSLVDVVPMKARVGSVSPVLFKDGEGCGACYKVKCLDHGICSRRAVTVIVTDE 104
+GGACG + V++ P + + +FKDG GCG+CY+VKC CS++ VTV +TD
Sbjct: 62 NGGACGIKN-VNLPPYNGMISCGNVPIFKDGRGCGSCYEVKCEQPAACSKQPVTVFITDM 120
Query: 105 CPGGLCAFGRTHFDLSGAAFSRMAVAGAGGHLRDRGQLSVVYRSVQ 150
+ A+ HFD SG AF MA G LR G + + +R V+
Sbjct: 121 NYEPISAY---HFDFSGKAFGAMACPGKETELRKAGIIDMQFRRVR 163
>Os03g0102700 Beta-expansin precursor
Length = 327
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 42/105 (40%), Positives = 58/105 (55%), Gaps = 4/105 (3%)
Query: 45 SGGACGYGSLVDVVPMKARVGSVSPVLFKDGEGCGACYKVKCLDHGICSRRAVTVIVTDE 104
+GGACG+ + V++ P A + LFKDG+GCG+CY+++C+ H CS TVI+TD
Sbjct: 111 NGGACGFKN-VNLPPFSAMTSCGNEPLFKDGKGCGSCYQIRCVGHPACSGLPETVIITDM 169
Query: 105 CPGGLCAFGRTHFDLSGAAFSRMAVAGAGGHLRDRGQLSVVYRSV 149
HFDLSG AF MA LR G + + +R V
Sbjct: 170 ---NYYPVSLYHFDLSGTAFGAMAKDNRNDELRHAGIIDIQFRRV 211
>Os10g0556100 beta-expansin EXPB4 [Oryza sativa (japonica cultivar-group)]
Length = 286
Score = 76.3 bits (186), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 42/105 (40%), Positives = 58/105 (55%), Gaps = 4/105 (3%)
Query: 45 SGGACGYGSLVDVVPMKARVGSVSPVLFKDGEGCGACYKVKCLDHGICSRRAVTVIVTDE 104
+GGACG+ + P + + LFKDG+GCG+CYK++C CS R+ TVI+TD
Sbjct: 74 NGGACGFKH-TNQYPFMSMTSCGNQPLFKDGKGCGSCYKIRCTKDQSCSGRSETVIITDM 132
Query: 105 CPGGLCAFGRTHFDLSGAAFSRMAVAGAGGHLRDRGQLSVVYRSV 149
+ F HFDLSG AF R+A G LR G + + + V
Sbjct: 133 NYYPVAPF---HFDLSGTAFGRLAKPGLNDKLRHSGIIDIEFTRV 174
>AK064012
Length = 459
Score = 76.3 bits (186), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 42/105 (40%), Positives = 58/105 (55%), Gaps = 4/105 (3%)
Query: 45 SGGACGYGSLVDVVPMKARVGSVSPVLFKDGEGCGACYKVKCLDHGICSRRAVTVIVTDE 104
+GGACG+ + P + + LFKDG+GCG+CYK++C CS R+ TVI+TD
Sbjct: 74 NGGACGF-KHTNQYPFMSMTSCGNQPLFKDGKGCGSCYKIRCTKDQSCSGRSETVIITDM 132
Query: 105 CPGGLCAFGRTHFDLSGAAFSRMAVAGAGGHLRDRGQLSVVYRSV 149
+ F HFDLSG AF R+A G LR G + + + V
Sbjct: 133 NYYPVAPF---HFDLSGTAFGRLAKPGLNDKLRHSGIIDIEFTRV 174
>Os10g0555600 Beta-expansin precursor
Length = 275
Score = 75.5 bits (184), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 41/105 (39%), Positives = 57/105 (54%), Gaps = 4/105 (3%)
Query: 45 SGGACGYGSLVDVVPMKARVGSVSPVLFKDGEGCGACYKVKCLDHGICSRRAVTVIVTDE 104
+GGACG+ + V+ P + + +FKDG+GCG+CY+++C CS TVI+TD
Sbjct: 63 NGGACGFKN-VNQYPFSSMTSCGNEPIFKDGKGCGSCYQIRCNKDPSCSGNIETVIITDM 121
Query: 105 CPGGLCAFGRTHFDLSGAAFSRMAVAGAGGHLRDRGQLSVVYRSV 149
R HFDLSG AF MA G LR G + + +R V
Sbjct: 122 ---NYYPVARYHFDLSGTAFGAMAKPGLNDKLRHSGIIDIQFRRV 163
>Os03g0106800 Beta-expansin precursor (Beta-expansin OsEXPB10)
Length = 267
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/106 (38%), Positives = 58/106 (54%), Gaps = 4/106 (3%)
Query: 45 SGGACGYGSLVDVVPMKARVGSVSPVLFKDGEGCGACYKVKCLDHGICSRRAVTVIVTDE 104
+GGACGY +D P + +FKDG+GCG+C++VKC CS + V + +TD
Sbjct: 60 NGGACGYKD-IDKAPFLGMNSCGNDPIFKDGKGCGSCFEVKCSKPEACSDKPVIIHITDM 118
Query: 105 CPGGLCAFGRTHFDLSGAAFSRMAVAGAGGHLRDRGQLSVVYRSVQ 150
+ A+ HFDLSG AF MA G LR G + + +R V+
Sbjct: 119 NTEPIAAY---HFDLSGHAFGAMAKEGKDEELRKAGIIDMQFRRVR 161
>Os03g0106900 Beta-expansin precursor (Beta-expansin 1)
Length = 267
Score = 72.4 bits (176), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 41/106 (38%), Positives = 56/106 (52%), Gaps = 4/106 (3%)
Query: 45 SGGACGYGSLVDVVPMKARVGSVSPVLFKDGEGCGACYKVKCLDHGICSRRAVTVIVTDE 104
+GGACGY VD P + +FKDG+GCG+C+++KC CS + + VTD
Sbjct: 60 NGGACGYKD-VDKAPFLGMNSCGNDPIFKDGKGCGSCFEIKCSKPEACSDKPALIHVTDM 118
Query: 105 CPGGLCAFGRTHFDLSGAAFSRMAVAGAGGHLRDRGQLSVVYRSVQ 150
+ A+ HFDLSG AF MA G LR G + +R V+
Sbjct: 119 NDEPIAAY---HFDLSGLAFGAMAKDGKDEELRKAGIIDTQFRRVK 161
>Os03g0106500 Beta-expansin precursor (Beta-expansin 1)
Length = 267
Score = 72.4 bits (176), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 41/106 (38%), Positives = 56/106 (52%), Gaps = 4/106 (3%)
Query: 45 SGGACGYGSLVDVVPMKARVGSVSPVLFKDGEGCGACYKVKCLDHGICSRRAVTVIVTDE 104
+GGACGY VD P + +FKDG+GCG+C+++KC CS + + VTD
Sbjct: 60 NGGACGYKD-VDKAPFLGMNSCGNDPIFKDGKGCGSCFEIKCSKPEACSDKPALIHVTDM 118
Query: 105 CPGGLCAFGRTHFDLSGAAFSRMAVAGAGGHLRDRGQLSVVYRSVQ 150
+ A+ HFDLSG AF MA G LR G + +R V+
Sbjct: 119 NDEPIAAY---HFDLSGLAFGAMAKDGKDEELRKAGIIDTQFRRVK 161
>Os10g0535900
Length = 266
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 42/96 (43%), Positives = 51/96 (53%), Gaps = 14/96 (14%)
Query: 46 GGACGYGSLVDVVPMKARVGSVSPVLFKDGEGCGACYKVKCLDHGICSR--RAVTVIVTD 103
GGACGYG+L ++S LFKDG GCG CY+++C+ C R A+TV T+
Sbjct: 55 GGACGYGNLY-ASGYGTDTAALSTTLFKDGYGCGTCYQMRCVGTASCYRGSPAITVTATN 113
Query: 104 ECP-----------GGLCAFGRTHFDLSGAAFSRMA 128
CP GG C R HFDLS AF RMA
Sbjct: 114 LCPPNWAEDPDRGGGGWCNPPRAHFDLSKPAFMRMA 149
>Os03g0132200 Expansin-like protein A
Length = 279
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 63/133 (47%), Gaps = 11/133 (8%)
Query: 44 FSGGACGYGSLVDVVPMKARVGSVSPVLFKDGEGCGACYKVKCLDHGICSRRAVTVIVTD 103
+ G+CGYG+ + + P L++ G GCGACY+V+C D +CS V+VTD
Sbjct: 54 LTAGSCGYGTAAATFNGGGFLAAAGPALYRGGVGCGACYQVRCKDKKLCSNAGARVVVTD 113
Query: 104 ECPGGLCAFGRTHFDLSGAAFSRMAVAGAGGHLRDRGQLSVVYRSV--QIYQDCVQVRRE 161
RT LS AF+ MA G L + + V Y+ V + + VR +
Sbjct: 114 R-----ARTNRTGLVLSSPAFAAMARPGMAASLTELAAVDVEYKRVPCEYRHRSLSVRVD 168
Query: 162 EHSLPCKRGLDEL 174
E S RG +EL
Sbjct: 169 ERS----RGPNEL 177
>Os01g0274500 Similar to Alpha-expansin 2
Length = 251
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/97 (40%), Positives = 52/97 (53%), Gaps = 10/97 (10%)
Query: 46 GGACGYGSLVDVVPMKARVGSVSPVLFKDGEGCGACYKVKCLDHGICSRRAVTVIVTDEC 105
GGACGYG+L ++S LF +G+ CGAC++V+C G C V V T+ C
Sbjct: 48 GGACGYGNLYSA-GYGTSTAALSTALFNNGQSCGACFEVRCGGGGSCLAGTVAVTATNLC 106
Query: 106 P---------GGLCAFGRTHFDLSGAAFSRMAVAGAG 133
P GG C R HFD++ AF+R+A A AG
Sbjct: 107 PPNYALAGDAGGWCNPPRPHFDMAEPAFTRIAQARAG 143
>Os06g0621900 Similar to Alpha-expansin OsEXPA16 (Fragment)
Length = 260
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 43/99 (43%), Positives = 55/99 (55%), Gaps = 13/99 (13%)
Query: 46 GGACGYGSLVDVVPMKARVGSVSPVLFKDGEGCGACYKVKCLDHGI-CSRRAVTVIV--T 102
GGACGYG L D+ VS LF G CG CY+V+C++H + C R + TV+V T
Sbjct: 52 GGACGYGDL-DIFRYGRYTAGVSGALFGRGSACGGCYEVRCVNHVLWCLRGSPTVVVTAT 110
Query: 103 DECP---------GGLCAFGRTHFDLSGAAFSRMAVAGA 132
D C GG C F + HF++S AAF R+A A A
Sbjct: 111 DFCAPNLGLSDDYGGWCNFPKEHFEMSEAAFLRVAKAKA 149
>Os01g0823100 Alpha-expansin OsEXPA2
Length = 251
Score = 65.5 bits (158), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 39/98 (39%), Positives = 53/98 (54%), Gaps = 11/98 (11%)
Query: 46 GGACGYGSLVDVVPMKARVGSVSPVLFKDGEGCGACYKVKCLDHG-ICSRRAVTVIVTDE 104
GGACGYG+L ++S VLF DG CG+CY+++C + G C +VTV T+
Sbjct: 47 GGACGYGNLYST-GYGTNTAALSTVLFNDGAACGSCYELRCDNDGQWCLPGSVTVTATNL 105
Query: 105 CP---------GGLCAFGRTHFDLSGAAFSRMAVAGAG 133
CP GG C R HFD++ AF ++ V AG
Sbjct: 106 CPPNYALPNDDGGWCNPPRPHFDMAEPAFLQIGVYRAG 143
>Os06g0725300 Expansin/Lol pI family protein
Length = 313
Score = 65.5 bits (158), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 59/116 (50%), Gaps = 12/116 (10%)
Query: 42 SYFSGGACGYGSLVDVVPMKARVGSVSPVLFKDGEGCGACYKVKCLDHGICSRRAVTVIV 101
++ +GGACG+G+ PM+ V +V+ LF+ G CGACY+++C D +C V V+V
Sbjct: 55 AHLTGGACGFGA----APMELNVAAVTADLFRHGHACGACYQLRCRDRRLCGEDGVKVVV 110
Query: 102 TD-------ECPGGLCAFGRTHFDLSGAAFSRMAVAGAGGH-LRDRGQLSVVYRSV 149
D E A G F ++ AF+ MA G H L + L V +R +
Sbjct: 111 ADMAKQPEQEGEMNRTAGGSLQFRITEDAFAAMAKQGVSAHELTRQRTLEVDFRRI 166
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.323 0.140 0.450
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 12,632,350
Number of extensions: 589648
Number of successful extensions: 1327
Number of sequences better than 1.0e-10: 25
Number of HSP's gapped: 1336
Number of HSP's successfully gapped: 25
Length of query: 323
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 222
Effective length of database: 11,762,187
Effective search space: 2611205514
Effective search space used: 2611205514
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 156 (64.7 bits)