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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0246300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Expansin/Lol pI family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.85 (0.0348) R2 : 0.392
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 11.2 (0.658) R2dE : 0.384 R2E : 0.384
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.156 (0.0732) R2dN8 : 0.00779 R2N8 : 0.00846
σ : 0.655
deviance : 196.68
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_____
C
peak time of C : --
E
wheather : wind
threshold : 0.1993
memory length : 2
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 21.8
open length of G : 2.13

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
193.58 0.654 2.83 0.0772 0.127 3.57 0.333 -36.8 -0.128 12.5 1 1 22 1
193.6 0.653 2.84 0.236 0.128 11.2 0.336 -- -0.128 12.5 6.099e-05 2 21.9 0.867
194 0.654 2.83 0.0903 0.131 3.56 -- -37 -0.126 13.5 1 1 22 1
194.04 0.653 2.84 0.25 0.132 11.3 -- -- -0.125 13.4 0.1993 2 21.8 2.13
195.05 0.654 2.84 0.0849 -- 3.52 -- -37 -0.129 -- 1 1 22 1
318.14 0.836 2.85 0.118 0.0224 -- -0.742 -- -0.172 21.4 -- -- -- --
319.51 0.837 2.85 0.15 0.111 -- -- -- -0.168 16.6 -- -- -- --
195.1 0.653 2.84 0.245 -- 11.2 -- -- -0.128 -- 0.1993 2 21.8 2.13
195.68 0.655 2.85 -- 0.127 11.2 -- -- -0.153 13.4 0.1993 2 21.8 2.13
320.18 0.836 2.85 0.145 -- -- -- -- -0.171 -- -- -- -- --
320.11 0.837 2.86 -- 0.109 -- -- -- -0.185 16.6 -- -- -- --
196.68 0.655 2.85 -- -- 11.2 -- -- -0.156 -- 0.1993 2 21.8 2.13
320.73 0.836 2.86 -- -- -- -- -- -0.187 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 193.58 wind 1 10 < th dose independent rect. 22 1
3 193.58 wind 1 10 < th dose dependent rect. 22 1
5 201.67 wind 1 10 < th dose dependent rect. 15 8
6 201.77 wind 1 10 < th dose dependent rect. 17 6
23 239.40 wind 1 10 < th dose independent rect. 15 8
24 239.55 wind 1 10 < th dose independent rect. 17 6
62 281.67 temperature 20 30 > th dose dependent rect. 21 1
69 285.44 atmosphere 1005 10 < th dose independent rect. 22 1
84 290.61 radiation 1 270 > th dose independent rect. 18 1
103 291.65 wind 7 1440 > th dose independent rect. 1 8
113 293.50 wind 7 1440 > th dose independent rect. 8 1
117 293.83 wind 7 1440 < th dose independent rect. 3 6
120 293.95 wind 7 1440 < th dose independent rect. 1 8
128 294.51 wind 7 1440 > th dose dependent rect. 8 1
136 294.82 wind 7 1440 < th dose independent rect. 7 2
137 294.91 wind 7 1440 > th dose dependent rect. 1 8
142 295.20 wind 7 1440 > th dose dependent rect. 3 6
143 295.29 wind 7 1440 > th dose independent rect. 23 11
146 295.32 wind 7 1440 < th dose independent rect. 22 12
149 295.38 wind 5 1440 > th dose dependent rect. 22 12
150 295.43 wind 5 270 > th dose dependent rect. 12 1
157 295.77 wind 3 90 < th dose independent rect. 15 7
166 295.84 temperature 25 90 < th dose independent rect. 12 3
169 295.96 wind 5 1440 > th dose dependent rect. 24 10
171 296.08 temperature 25 90 < th dose dependent rect. 12 1
177 296.53 wind 7 270 > th dose independent rect. 12 1
179 296.87 temperature 30 90 > th dose dependent rect. 17 17
180 296.89 temperature 25 10 < th dose independent rect. 13 1
233 298.49 wind 5 90 > th dose independent rect. 12 9
255 298.96 temperature 30 10 > th dose independent rect. 17 17
284 299.39 humidity 80 10 > th dose independent rect. 21 1
294 299.55 wind 5 1440 > th dose independent rect. 22 16
305 299.76 temperature 25 90 < th dose dependent rect. 12 3
307 299.84 wind 5 1440 < th dose independent rect. 22 16
316 299.97 temperature 20 90 > th dose independent sin 0 NA
325 300.08 wind 5 1440 > th dose independent sin 7 NA
332 300.14 temperature 20 90 < th dose independent rect. 5 15
336 300.20 temperature 20 90 < th dose independent sin 0 NA
342 300.35 atmosphere 1000 90 < th dose dependent rect. 16 2
343 300.35 temperature 20 30 < th dose dependent rect. 6 14
368 300.62 wind 5 1440 < th dose independent sin 7 NA
372 300.71 wind 3 90 > th dose dependent rect. 12 9
407 301.16 temperature 20 90 < th dose independent rect. 24 20
415 301.26 wind 3 90 < th dose independent rect. 11 11
430 301.42 temperature 25 270 > th dose independent rect. 18 3
439 301.47 temperature 20 10 > th dose independent rect. 21 1
442 301.50 temperature 20 90 < th dose independent rect. 7 12
497 301.97 wind 5 90 > th dose independent rect. 12 18
498 301.97 wind 5 90 > th dose independent rect. 12 20
506 302.07 wind 5 1440 > th dose independent rect. 17 21
511 302.09 wind 5 1440 > th dose dependent sin 8 NA
530 302.23 wind 3 90 < th dose dependent rect. 11 11
550 302.42 wind 5 1440 < th dose independent rect. 17 21
569 302.56 temperature 20 90 < th dose independent rect. 3 17
607 302.90 temperature 30 10 < th dose dependent rect. 13 1
633 303.03 wind 5 1440 < th dose independent rect. 22 7
637 303.05 wind 5 1440 < th dose independent rect. 22 5
639 303.06 wind 5 1440 < th dose independent rect. 22 3
641 303.06 wind 5 1440 > th dose dependent rect. 22 1
651 303.13 wind 5 1440 > th dose independent rect. 17 17
655 303.15 wind 5 1440 > th dose independent rect. 22 1
663 303.18 temperature 20 90 > th dose independent rect. 2 10
671 303.22 humidity 50 1440 > th dose dependent rect. 1 2
680 303.28 wind 5 1440 > th dose independent rect. 22 7
688 303.30 wind 3 1440 > th dose dependent rect. 22 7
693 303.33 wind 5 1440 > th dose independent rect. 22 5
699 303.35 wind 5 1440 < th dose independent rect. 22 1
704 303.37 wind 5 1440 > th dose independent rect. 22 3
737 303.49 wind 3 1440 > th dose dependent rect. 22 16
756 303.60 wind 5 1440 < th dose independent rect. 17 17
774 303.70 wind 5 10 > th dose independent rect. 13 1
777 303.70 atmosphere 1005 10 < th dose dependent rect. 18 1
790 303.75 temperature 20 10 > th dose independent rect. 2 11
793 303.76 wind 5 4320 > th dose dependent rect. 20 6
798 303.80 temperature 20 10 < th dose independent rect. 6 2
804 303.84 wind 5 10 > th dose dependent rect. 13 8
814 303.90 atmosphere 1010 10 < th dose dependent rect. 21 1
819 303.92 wind 5 1440 < th dose independent rect. 12 1
864 304.09 wind 5 10 > th dose independent rect. 13 8
876 304.14 wind 5 1440 > th dose independent rect. 12 1
877 304.14 wind 5 1440 > th dose independent rect. 6 7
879 304.15 wind 5 1440 < th dose independent rect. 7 7
885 304.17 wind 7 4320 < th dose independent rect. 20 6
908 304.24 atmosphere 1000 90 < th dose independent rect. 16 2
947 304.33 temperature 20 10 < th dose independent rect. 6 5
970 304.40 humidity 90 1440 < th dose dependent rect. 1 2
973 304.40 temperature 25 30 < th dose dependent rect. 13 20
983 304.43 wind 7 4320 > th dose independent rect. 20 6