Os01g0274500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Alpha-expansin 2.
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Os01g0274500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Alpha-expansin 2.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 262.42 | 0.761 | 8.15 | 0.151 | 0.447 | 1.83 | 0.84 | 0.856 | -0.294 | 7.46 | 22.3 | 2087 | -- | -- |
| 264.09 | 0.757 | 8.12 | 0.442 | 0.448 | 1.83 | 0.941 | -- | -0.224 | 7.39 | 22.2 | 2098 | -- | -- |
| 264.19 | 0.757 | 8.15 | 0.15 | 0.453 | 1.84 | -- | 0.94 | -0.297 | 7.04 | 22.3 | 2104 | -- | -- |
| 266.27 | 0.76 | 8.12 | 0.435 | 0.473 | 1.81 | -- | -- | -0.215 | 6.73 | 22.4 | 2219 | -- | -- |
| 274.93 | 0.772 | 8.16 | 0.171 | -- | 1.87 | -- | 0.928 | -0.279 | -- | 22.2 | 2104 | -- | -- |
| 384.37 | 0.919 | 8.26 | -0.308 | 0.54 | -- | 1.02 | -- | -0.862 | 7.99 | -- | -- | -- | -- |
| 387.46 | 0.922 | 8.26 | -0.281 | 0.541 | -- | -- | -- | -0.864 | 7.83 | -- | -- | -- | -- |
| 277.1 | 0.775 | 8.12 | 0.509 | -- | 1.89 | -- | -- | -0.182 | -- | 22.3 | 2119 | -- | -- |
| 270.9 | 0.767 | 8.13 | -- | 0.473 | 1.69 | -- | -- | -0.282 | 6.71 | 22.5 | 2218 | -- | -- |
| 403.35 | 0.938 | 8.27 | -0.275 | -- | -- | -- | -- | -0.856 | -- | -- | -- | -- | -- |
| 389.53 | 0.923 | 8.25 | -- | 0.539 | -- | -- | -- | -0.833 | 7.87 | -- | -- | -- | -- |
| 282.31 | 0.783 | 8.14 | -- | -- | 1.71 | -- | -- | -0.286 | -- | 22.4 | 2102 | -- | -- |
| 405.34 | 0.94 | 8.26 | -- | -- | -- | -- | -- | -0.826 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 267.04 | temperature | 30 | 4320 | < th | dose dependent | rect. | 1 | 1 |
| 2 | 267.33 | temperature | 10 | 4320 | > th | dose dependent | rect. | 1 | 1 |
| 3 | 267.59 | temperature | 20 | 1440 | > th | dose dependent | rect. | 1 | 1 |
| 4 | 267.61 | temperature | 25 | 1440 | < th | dose dependent | rect. | 15 | 14 |
| 23 | 268.38 | temperature | 25 | 1440 | < th | dose dependent | sin | 14 | NA |
| 119 | 270.48 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 18 |
| 131 | 270.69 | temperature | 25 | 4320 | < th | dose dependent | rect. | 21 | 6 |
| 158 | 270.99 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 21 |
| 322 | 272.30 | temperature | 30 | 1440 | < th | dose dependent | rect. | 4 | 1 |
| 332 | 272.36 | temperature | 25 | 1440 | < th | dose dependent | no | NA | NA |
| 358 | 272.53 | temperature | 25 | 1440 | < th | dose dependent | rect. | 20 | 23 |
| 361 | 272.54 | temperature | 25 | 1440 | < th | dose dependent | rect. | 24 | 23 |
| 423 | 272.93 | temperature | 25 | 1440 | < th | dose dependent | rect. | 4 | 23 |
| 450 | 273.08 | temperature | 15 | 1440 | > th | dose dependent | rect. | 4 | 1 |
| 771 | 275.27 | temperature | 10 | 720 | > th | dose dependent | sin | 8 | NA |
| 854 | 275.75 | temperature | 10 | 270 | > th | dose dependent | rect. | 1 | 23 |