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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os10g0555700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Beta-expansin.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.55 (0.106) R2 : 0.573
β1 : -9.17 (0.683) R2dD : 1.17 R2D : -0.112
β2 : 2.9 (0.184) R2dC : 0.236 R2C : 0.107
β3 : 2.48 (0.32) R2dE : 0.125 R2E : -0.242
β4 : -3.5 (0.777) R2dD*C : 0.0191 R2D*C : -0.0493
β5 : -16 (2.31) R2dD*E : 0.314 R2D*E : -0.745
γ1 : -1.58 (0.213) R2dN8 : 0.131 R2N8 : -0.121
σ : 1.36
deviance : 841.94
__
_____
C
peak time of C : 8.2
E
wheather : temperature
threshold : 24.81
memory length : 3040
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
841.94 1.36 5.55 -9.17 2.9 2.48 -3.5 -16 -1.58 8.2 24.81 3040 -- --
935.78 1.42 5.14 -5.86 2.87 1.83 -2.98 -- -1.16 7.84 11.15 19387 -- --
878.93 1.38 5.54 -9.16 2.91 2.43 -- -15.7 -1.54 8.1 24.91 3037 -- --
946.17 1.43 5.12 -5.52 2.8 1.7 -- -- -0.99 8.02 -2.954 8489 -- --
1327.91 1.7 5.64 -9.08 -- 2.39 -- -17.4 -1.47 -- 25.02 4403 -- --
959.28 1.45 5 -4.53 2.77 -- -3.25 -- -0.488 8.07 -- -- -- --
990.73 1.47 5 -4.63 2.78 -- -- -- -0.487 7.97 -- -- -- --
1367.8 1.72 5.19 -5.5 -- 1.67 -- -- -0.95 -- -1.635 8626 -- --
1200.11 1.61 4.68 -- 2.76 -3.04 -- -- 0.935 7.91 -1.517 47520 -- --
1413.73 1.76 5.07 -4.6 -- -- -- -- -0.451 -- -- -- -- --
1555.52 1.84 4.89 -- 2.76 -- -- -- 0.0282 8.09 -- -- -- --
1615.19 1.87 4.75 -- -- -3.04 -- -- 0.969 -- 5.506 47520 -- --
1972.1 2.07 4.96 -- -- -- -- -- 0.0592 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 798.02 humidity 90 14400 < th dose independent rect. 2 1
2 806.32 humidity 90 43200 > th dose independent rect. 5 1
3 810.29 humidity 90 43200 > th dose dependent rect. 5 1
4 812.60 humidity 90 43200 > th dose dependent rect. 4 3
6 815.24 humidity 90 43200 > th dose dependent rect. 3 6
10 816.28 wind 5 43200 > th dose independent rect. 14 1
11 816.31 wind 5 43200 < th dose independent rect. 14 1
13 816.56 humidity 90 43200 > th dose dependent rect. 2 9
24 818.06 humidity 90 43200 > th dose independent rect. 2 9
31 818.62 wind 5 43200 > th dose independent rect. 13 3
32 818.62 humidity 90 43200 > th dose dependent sin 5 NA
38 818.90 radiation 20 43200 > th dose independent rect. 7 1
48 819.32 radiation 40 43200 > th dose independent rect. 9 1
51 819.35 humidity 90 43200 > th dose independent rect. 3 7
58 819.70 humidity 90 43200 > th dose independent sin 5 NA
82 820.35 wind 3 43200 > th dose dependent rect. 13 2
92 820.55 humidity 90 43200 > th dose independent rect. 22 16
237 822.73 humidity 90 43200 > th dose independent rect. 4 3
244 822.87 radiation 30 43200 > th dose dependent rect. 9 1
303 823.28 humidity 90 43200 < th dose independent rect. 1 13
309 823.37 humidity 90 43200 < th dose independent rect. 2 10
319 823.54 radiation 10 43200 > th dose dependent rect. 5 5
344 823.71 humidity 90 43200 > th dose dependent no NA NA
352 823.80 humidity 90 43200 > th dose dependent rect. 8 23
354 823.84 humidity 90 43200 < th dose independent sin 5 NA
385 824.35 radiation 40 43200 > th dose independent sin 10 NA
417 824.72 radiation 40 43200 < th dose independent rect. 9 1
445 824.95 humidity 90 43200 < th dose independent rect. 22 16
450 824.98 humidity 90 43200 < th dose independent rect. 18 20
489 825.22 humidity 90 43200 < th dose independent rect. 22 18
529 825.51 radiation 40 43200 < th dose dependent rect. 8 1
534 825.56 humidity 90 43200 > th dose independent rect. 24 23
537 825.58 humidity 90 43200 > th dose independent rect. 8 23
557 825.80 humidity 90 43200 > th dose independent no NA NA
562 825.91 radiation 10 43200 > th dose dependent sin 9 NA
573 826.03 humidity 90 43200 < th dose independent rect. 24 20
582 826.12 humidity 90 43200 < th dose independent rect. 22 22
586 826.16 radiation 20 43200 > th dose independent sin 10 NA
597 826.22 humidity 90 43200 > th dose independent rect. 11 23
701 826.56 humidity 90 43200 > th dose independent rect. 2 23
747 826.86 humidity 90 43200 < th dose independent rect. 24 23
785 827.10 humidity 90 43200 < th dose independent rect. 7 23
793 827.16 humidity 90 43200 > th dose independent rect. 5 23
808 827.25 humidity 90 43200 < th dose independent no NA NA
824 827.36 radiation 40 43200 < th dose dependent rect. 3 7
825 827.36 radiation 40 43200 < th dose dependent rect. 1 9
826 827.37 radiation 30 43200 < th dose independent rect. 18 16
831 827.37 radiation 40 43200 < th dose dependent rect. 19 15
832 827.38 radiation 30 43200 < th dose independent rect. 3 7
833 827.38 radiation 30 43200 < th dose independent rect. 1 9
847 827.42 humidity 90 43200 < th dose independent rect. 3 8
927 827.69 radiation 20 43200 < th dose independent sin 8 NA
940 827.80 humidity 90 43200 < th dose independent rect. 5 23
941 827.80 wind 9 43200 < th dose dependent rect. 13 1
978 828.04 humidity 90 43200 < th dose independent rect. 2 23
997 828.12 radiation 20 43200 < th dose independent rect. 4 9