FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0106500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Beta-expansin precursor (Beta-expansin 1).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.5 (0.0315) R2 : 0.508
β1 : 0.878 (0.115) R2dD : 0.0682 R2D : 0.014
β2 : -- (--) R2dC : -- R2C : --
β3 : -2.67 (0.147) R2dE : 0.539 R2E : -0.0875
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -11.7 (0.647) R2dD*E : 0.515 R2D*E : -0.0416
γ1 : 0.0136 (0.0682) R2dN8 : 6.5e-05 R2N8 : -0.0135
σ : 0.574
deviance : 151.86
__
_____
C
peak time of C : --
E
wheather : wind
threshold : 6.6
memory length : 4323
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 18.4
open length of G : 4.23

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
149.33 0.574 3.5 0.848 0.0597 -2.55 -1.11 -11.4 0.00321 5.84 6.69 4324 18.4 3.89
232.51 0.71 3.5 0.658 0.0686 -1.38 -0.649 -- -0.0168 5.77 8.498 4320 18.4 3.87
151.85 0.574 3.5 0.865 0.0828 -2.66 -- -11.8 0.0183 7.16 6.6 4323 18.4 4.1
233.33 0.711 3.5 0.57 0.0695 -1.38 -- -- -0.0186 5.74 8.496 4320 18.4 3.86
151.86 0.574 3.5 0.878 -- -2.67 -- -11.7 0.0136 -- 6.6 4323 18.4 4.23
295.33 0.806 3.44 0.571 0.145 -- -0.7 -- -0.124 6.77 -- -- -- --
295.56 0.805 3.44 0.564 0.188 -- -- -- -0.12 9.62 -- -- -- --
233.18 0.711 3.5 0.566 -- -1.37 -- -- -0.0186 -- 8.5 4320 18.4 3.87
241.8 0.724 3.5 -- 0.0347 -1.37 -- -- -0.0193 5.84 8.5 4320 18.5 3.83
297.64 0.806 3.44 0.563 -- -- -- -- -0.119 -- -- -- -- --
303.95 0.816 3.45 -- 0.187 -- -- -- -0.183 9.4 -- -- -- --
241.71 0.724 3.5 -- -- -1.38 -- -- -0.0293 -- 8.4 4320 18.4 3.86
306 0.817 3.46 -- -- -- -- -- -0.182 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 158.80 wind 5 4320 > th dose dependent rect. 19 4
4 159.31 wind 7 4320 < th dose independent rect. 18 4
15 162.03 wind 7 4320 > th dose independent rect. 18 4
32 165.57 humidity 90 1440 < th dose dependent rect. 3 1
48 167.28 wind 5 4320 > th dose independent rect. 21 1
137 173.08 humidity 90 1440 < th dose dependent rect. 23 8
141 173.79 humidity 90 1440 < th dose dependent rect. 2 5
166 177.71 atmosphere 995 14400 < th dose independent rect. 17 1
167 177.71 atmosphere 995 14400 < th dose dependent rect. 17 1
191 178.40 atmosphere 995 14400 > th dose independent rect. 16 5
192 178.52 atmosphere 995 14400 > th dose independent rect. 16 3
219 180.79 humidity 50 1440 > th dose dependent rect. 24 7
276 182.80 atmosphere 995 14400 > th dose independent rect. 8 13
278 182.85 atmosphere 995 14400 > th dose independent rect. 8 11
325 183.68 humidity 70 1440 > th dose dependent rect. 3 1
330 183.93 humidity 80 1440 < th dose independent rect. 22 1
368 184.87 humidity 70 1440 > th dose dependent rect. 1 3
384 185.09 wind 7 4320 > th dose independent rect. 8 1
412 185.48 humidity 90 1440 < th dose dependent rect. 5 1
460 187.15 wind 7 4320 < th dose independent rect. 8 1
498 188.44 atmosphere 995 14400 > th dose independent rect. 24 16
499 188.45 atmosphere 995 14400 < th dose independent rect. 3 13
500 188.46 atmosphere 995 14400 > th dose independent rect. 3 13
521 188.65 atmosphere 995 14400 > th dose independent rect. 19 21
545 188.81 humidity 70 1440 > th dose dependent rect. 5 1
551 188.95 atmosphere 995 14400 < th dose independent rect. 18 22
578 189.20 atmosphere 995 14400 > th dose independent sin 3 NA
605 189.37 atmosphere 995 14400 < th dose dependent sin 0 NA
606 189.39 atmosphere 995 14400 > th dose independent sin 22 NA
608 189.40 atmosphere 995 14400 < th dose independent sin 3 NA
617 189.46 atmosphere 995 14400 < th dose independent sin 22 NA
625 189.52 humidity 90 1440 < th dose dependent rect. 24 1
770 190.40 atmosphere 995 14400 > th dose independent rect. 24 21
809 190.43 atmosphere 995 14400 > th dose independent no NA NA
825 190.43 atmosphere 995 14400 > th dose independent rect. 11 22
845 190.44 atmosphere 995 14400 > th dose independent rect. 14 23