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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os10g0556100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : beta-expansin EXPB4 [Oryza sativa (japonica cultivar-group)].


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.34 (0.508) R2 : 0.382
β1 : 16.2 (4.67) R2dD : 3.63 R2D : -6.03
β2 : 1.08 (0.214) R2dC : 0.036 R2C : -0.799
β3 : -15.9 (3.91) R2dE : 6.5 R2E : -8.3
β4 : -3.29 (0.825) R2dD*C : 0.0221 R2D*C : -0.846
β5 : 164 (37.2) R2dD*E : 12.3 R2D*E : -8.17
γ1 : -1.25 (0.189) R2dN8 : 0.0824 R2N8 : -1.08
σ : 1.64
deviance : 1221.51
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_____
C
peak time of C : 1.56
E
wheather : humidity
threshold : 51.15
memory length : 1380
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 16
open length of G : 0.96

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
1221.51 1.64 3.34 16.2 1.08 -15.9 -3.29 164 -1.25 1.56 51.15 1380 16 0.96
1313.22 1.7 5.57 -4.09 1.49 5.2 -2.47 -- -1.44 2.33 51.15 1380 16 0.96
1263.78 1.66 3.33 16.3 1.1 -16 -- 164 -1.25 1.81 51 1361 16 0.951
1334.3 1.71 5.56 -4.03 1.51 5.36 -- -- -1.43 2.73 51.15 1380 16 0.96
1334.91 1.7 3.31 16.4 -- -15.8 -- 164 -1.16 -- 51.14 1301 16 0.94
1340.08 1.72 5.58 -4.08 1.45 -- -2.54 -- -1.46 2.25 -- -- -- --
1362.8 1.73 5.56 -4.01 1.47 -- -- -- -1.44 2.64 -- -- -- --
1429.74 1.76 5.48 -4.03 -- 5.29 -- -- -1.14 -- 55.42 738 17.4 0.991
1457.92 1.78 5.58 -- 1.3 3.78 -- -- -1.1 3.17 70.54 30588 16.7 1.48
1489.15 1.8 5.55 -3.95 -- -- -- -- -1.41 -- -- -- -- --
1786.17 1.98 5.46 -- 1.39 -- -- -- -0.997 2.61 -- -- -- --
1546.43 1.83 5.53 -- -- 3.98 -- -- -1.17 -- 72.06 29774 16.8 1.55
1899.74 2.03 5.46 -- -- -- -- -- -0.968 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 1222.91 humidity 50.0 1440 < th dose independent rect. 16 1
2 1223.03 humidity 50.0 1440 < th dose dependent rect. 16 1
3 1224.82 humidity 70.0 720 > th dose independent rect. 17 4
4 1225.19 humidity 70.0 720 > th dose independent rect. 17 6
5 1225.33 temperature 30.0 720 > th dose dependent rect. 18 1
19 1226.20 humidity 70.0 720 < th dose independent rect. 17 14
20 1226.30 humidity 70.0 720 < th dose independent rect. 17 3
66 1235.48 humidity 50.0 1440 > th dose independent rect. 16 1
88 1241.62 humidity 70.0 720 < th dose dependent rect. 18 1
90 1242.71 humidity 70.0 720 < th dose dependent rect. 18 13
105 1243.35 humidity 90.0 90 > th dose dependent rect. 3 2
132 1248.07 temperature 30.0 720 > th dose independent rect. 18 1
167 1250.03 humidity 90.0 90 > th dose independent rect. 3 2
169 1250.81 atmosphere 1005.0 720 < th dose independent rect. 17 1
171 1251.20 temperature 25.0 1440 > th dose dependent rect. 15 9
172 1251.30 radiation 30.0 1440 > th dose independent rect. 16 16
189 1252.64 atmosphere 1005.0 270 < th dose dependent rect. 17 2
192 1252.86 atmosphere 1010.0 10 < th dose dependent rect. 16 7
200 1253.36 wind 3.0 90 < th dose dependent rect. 3 2
212 1254.15 temperature 25.0 1440 > th dose dependent rect. 16 1
237 1254.69 wind 9.0 43200 > th dose independent rect. 6 9
260 1255.02 wind 7.0 43200 > th dose dependent rect. 5 12
261 1255.03 wind 9.0 43200 > th dose dependent rect. 10 5
262 1255.06 precipitation 0.1 30 < th dose independent rect. 3 17
263 1255.06 precipitation 0.1 30 < th dose dependent rect. 3 17
271 1255.22 wind 9.0 43200 > th dose independent rect. 2 13
278 1255.40 wind 9.0 43200 > th dose independent rect. 24 15
282 1255.42 radiation 40.0 270 < th dose independent rect. 24 9
294 1255.58 radiation 10.0 43200 > th dose independent rect. 10 1
320 1255.76 humidity 80.0 43200 < th dose dependent rect. 22 1
321 1255.80 wind 9.0 43200 < th dose independent rect. 4 11
334 1256.00 wind 9.0 43200 < th dose independent rect. 13 1
338 1256.19 temperature 25.0 1440 > th dose dependent sin 13 NA
350 1256.44 wind 7.0 43200 > th dose dependent rect. 24 17
372 1256.92 radiation 40.0 43200 > th dose dependent rect. 10 2
380 1257.05 wind 9.0 43200 > th dose independent rect. 18 22
402 1257.19 temperature 30.0 43200 > th dose dependent rect. 8 1
425 1257.35 wind 9.0 43200 > th dose dependent rect. 13 2
432 1257.46 precipitation 0.1 270 < th dose independent rect. 24 9
440 1257.46 precipitation 0.1 270 < th dose dependent rect. 24 9
455 1257.57 humidity 50.0 270 > th dose independent rect. 9 15
459 1257.60 temperature 15.0 10 > th dose independent rect. 20 7
465 1257.67 temperature 10.0 270 > th dose dependent rect. 14 15
495 1257.85 wind 1.0 90 < th dose independent rect. 4 1
499 1257.91 humidity 80.0 43200 < th dose dependent rect. 24 1
520 1258.11 humidity 70.0 270 > th dose independent rect. 24 9
529 1258.24 radiation 40.0 43200 < th dose independent rect. 10 1
533 1258.29 wind 7.0 43200 > th dose dependent sin 1 NA
544 1258.46 temperature 15.0 90 > th dose independent rect. 9 17
557 1258.63 temperature 30.0 43200 > th dose independent rect. 8 1
572 1258.65 humidity 50.0 270 > th dose dependent rect. 24 9
583 1258.76 atmosphere 1010.0 270 < th dose dependent rect. 15 4
590 1258.84 temperature 20.0 90 > th dose dependent rect. 3 2
591 1258.85 humidity 70.0 1440 < th dose dependent sin 12 NA
602 1258.99 atmosphere 1015.0 270 < th dose independent rect. 24 9
607 1259.03 radiation 1.0 720 > th dose dependent rect. 18 11
610 1259.09 radiation 40.0 43200 > th dose independent rect. 10 1
611 1259.09 temperature 10.0 270 > th dose independent rect. 24 9
613 1259.09 atmosphere 995.0 270 > th dose independent rect. 24 9
614 1259.09 temperature 10.0 270 > th dose independent rect. 9 15
617 1259.10 wind 9.0 270 < th dose independent rect. 24 9
625 1259.17 temperature 30.0 270 < th dose independent rect. 24 9
641 1259.19 radiation 10.0 43200 > th dose independent rect. 9 4
643 1259.19 radiation 40.0 43200 > th dose dependent rect. 7 5
668 1259.26 temperature 30.0 43200 < th dose independent rect. 23 10
669 1259.26 wind 9.0 270 < th dose independent rect. 9 15
675 1259.31 wind 9.0 43200 > th dose independent rect. 13 1
686 1259.45 temperature 30.0 43200 > th dose independent rect. 18 1
701 1259.46 temperature 30.0 43200 < th dose independent rect. 2 7
702 1259.46 temperature 30.0 43200 > th dose dependent rect. 18 1
739 1259.64 temperature 30.0 43200 < th dose independent rect. 21 12
744 1259.70 temperature 30.0 43200 < th dose independent rect. 5 4
769 1259.96 wind 9.0 43200 < th dose independent rect. 18 22
772 1259.99 temperature 30.0 43200 < th dose independent rect. 8 1
792 1260.20 temperature 10.0 90 > th dose dependent rect. 2 7
801 1260.27 temperature 30.0 43200 < th dose independent rect. 18 10
803 1260.28 radiation 40.0 43200 < th dose independent rect. 15 21
840 1260.47 wind 9.0 43200 > th dose independent sin 2 NA
841 1260.47 radiation 40.0 90 < th dose independent rect. 2 7
842 1260.47 radiation 40.0 43200 < th dose independent rect. 4 8
847 1260.50 temperature 30.0 43200 < th dose independent rect. 18 2
850 1260.51 temperature 30.0 43200 < th dose independent rect. 18 7
853 1260.52 wind 9.0 90 < th dose independent rect. 9 17
854 1260.52 radiation 40.0 43200 < th dose independent rect. 18 18
857 1260.53 radiation 40.0 43200 < th dose independent rect. 7 5
860 1260.53 radiation 40.0 43200 < th dose independent rect. 20 16
875 1260.64 temperature 10.0 270 > th dose dependent rect. 24 8
890 1260.78 temperature 30.0 43200 < th dose independent rect. 18 4
891 1260.78 humidity 80.0 43200 < th dose dependent rect. 4 1
895 1260.82 atmosphere 995.0 90 > th dose dependent rect. 19 8
902 1260.88 precipitation 0.1 90 < th dose independent rect. 2 7
904 1260.88 precipitation 0.1 90 < th dose dependent rect. 2 7
905 1260.89 humidity 60.0 90 > th dose independent rect. 2 7
916 1261.05 radiation 1.0 720 > th dose dependent rect. 18 1
931 1261.11 temperature 25.0 90 < th dose independent rect. 3 2
933 1261.15 radiation 40.0 270 < th dose dependent rect. 24 9
937 1261.16 temperature 30.0 10 < th dose independent rect. 20 7
938 1261.16 humidity 50.0 10 > th dose independent rect. 20 7
941 1261.16 atmosphere 995.0 10 > th dose independent rect. 20 7
942 1261.16 radiation 1.0 10 < th dose independent rect. 20 7
947 1261.16 temperature 10.0 10 > th dose independent rect. 3 17
949 1261.16 atmosphere 1015.0 10 < th dose independent rect. 3 17
951 1261.16 radiation 1.0 10 < th dose dependent rect. 20 7
987 1261.28 humidity 60.0 1440 < th dose independent sin 12 NA
988 1261.30 temperature 30.0 720 < th dose independent rect. 18 8
994 1261.34 precipitation 0.1 30 < th dose independent rect. 20 7
995 1261.34 precipitation 0.1 30 < th dose dependent rect. 20 7
999 1261.40 temperature 30.0 43200 > th dose independent rect. 18 16