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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0621900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Alpha-expansin OsEXPA16 (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.84 (0.0568) R2 : 0.371
β1 : -3.18 (0.319) R2dD : 0.485 R2D : -0.0864
β2 : 1.03 (0.116) R2dC : 0.116 R2C : 0.00346
β3 : 2.45 (0.199) R2dE : 0.317 R2E : 0.00609
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -5.39 (1.08) R2dD*E : 0.116 R2D*E : -0.248
γ1 : -0.569 (0.137) R2dN8 : 0.0591 R2N8 : -0.131
σ : 0.883
deviance : 359.4
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_____
C
peak time of C : 23
E
wheather : temperature
threshold : 21.3
memory length : 851
response mode : > th
dose dependency : dose dependent
G
type of G : sin
peak or start time of G : 2.24
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
356.52 0.887 4.85 -3.24 1.05 2.45 -0.843 -5.52 -0.576 23.1 21.21 837 2.14 --
376.75 0.904 4.73 -1.98 1.07 2.18 -0.753 -- -0.251 22.2 20.3 895 2.86 --
359.4 0.883 4.84 -3.18 1.03 2.45 -- -5.39 -0.569 23 21.3 851 2.24 --
377.04 0.904 4.71 -1.92 1.07 2.14 -- -- -0.205 22.4 20.47 901 2.75 --
405.76 0.938 4.8 -3.08 -- 2.15 -- -4.82 -0.506 -- 22.4 999 2.19 --
476.27 1.02 4.57 -1.34 0.674 -- -0.665 -- 0.353 22.4 -- -- -- --
478.05 1.02 4.57 -1.32 0.679 -- -- -- 0.355 22.3 -- -- -- --
418.32 0.953 4.69 -1.8 -- 1.74 -- -- -0.153 -- 21.51 1139 1.86 --
462.6 1 4.62 -- 0.922 1.59 -- -- 0.167 22.1 21 883 2.92 --
506.08 1.05 4.55 -1.31 -- -- -- -- 0.356 -- -- -- -- --
523.8 1.07 4.54 -- 0.672 -- -- -- 0.501 22.1 -- -- -- --
498.74 1.04 4.58 -- -- 1.27 -- -- 0.237 -- 21.6 1067 0.0676 --
551.16 1.1 4.52 -- -- -- -- -- 0.502 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 359.75 temperature 20 720 > th dose dependent rect. 1 8
2 360.33 temperature 20 720 > th dose dependent rect. 23 10
5 361.54 temperature 20 720 > th dose dependent rect. 21 14
10 363.84 temperature 20 720 > th dose dependent sin 7 NA
44 374.32 temperature 10 720 > th dose dependent rect. 21 14
61 377.51 temperature 25 720 > th dose independent rect. 6 3
62 377.61 temperature 10 720 > th dose dependent rect. 23 10
68 378.53 temperature 25 1440 > th dose dependent rect. 15 4
88 380.00 temperature 10 720 > th dose dependent rect. 21 18
94 380.26 temperature 25 1440 > th dose dependent rect. 18 1
102 380.61 temperature 10 720 > th dose dependent rect. 23 16
108 380.91 temperature 30 720 < th dose dependent sin 7 NA
131 381.80 temperature 30 720 < th dose dependent rect. 18 18
170 382.96 temperature 20 1440 > th dose dependent rect. 15 14
183 383.23 temperature 30 720 < th dose dependent rect. 2 8
222 383.84 temperature 10 720 > th dose dependent rect. 3 8
232 384.01 temperature 10 720 > th dose dependent rect. 12 23
245 384.23 temperature 20 1440 > th dose dependent sin 15 NA
246 384.25 temperature 30 720 < th dose dependent rect. 2 5
407 386.57 temperature 25 1440 > th dose independent rect. 15 7
408 386.58 temperature 25 1440 < th dose independent rect. 15 7
416 386.69 temperature 25 720 < th dose dependent rect. 3 2
440 386.99 temperature 30 720 < th dose dependent rect. 24 21
538 387.92 temperature 30 270 < th dose dependent rect. 22 22
575 388.28 temperature 30 720 < th dose dependent rect. 24 19
590 388.44 temperature 25 1440 < th dose independent rect. 6 17
623 388.72 temperature 25 1440 > th dose independent rect. 6 16
662 389.17 temperature 25 720 < th dose independent rect. 5 6
764 389.88 temperature 30 1440 < th dose dependent rect. 18 1
781 390.05 temperature 25 720 < th dose independent rect. 3 8
791 390.11 temperature 25 270 > th dose independent rect. 6 12
827 390.38 temperature 25 10 > th dose dependent rect. 14 23
844 390.46 temperature 30 1440 < th dose dependent rect. 15 7
906 390.82 temperature 20 1440 > th dose dependent rect. 1 23
910 390.85 temperature 20 1440 > th dose dependent no NA NA
925 390.90 temperature 10 720 > th dose dependent rect. 10 23