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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0106900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Beta-expansin precursor (Beta-expansin 1).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.24 (0.0351) R2 : 0.533
β1 : 0.832 (0.128) R2dD : 0.0467 R2D : 0.0227
β2 : -- (--) R2dC : -- R2C : --
β3 : -2.24 (0.131) R2dE : 0.352 R2E : 0.111
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -10.1 (0.566) R2dD*E : 0.364 R2D*E : 0.158
γ1 : -0.0301 (0.0768) R2dN8 : 0.000232 R2N8 : -0.00317
σ : 0.641
deviance : 189.5
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_____
C
peak time of C : --
E
wheather : wind
threshold : 6.675
memory length : 4322
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 18.3
open length of G : 3

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
184.91 0.639 3.24 0.82 0.192 -2.23 0.835 -10.1 -0.0299 14.8 6.697 4322 18.3 2.99
262.16 0.754 3.23 0.608 0.0867 -2.04 0.473 -- -0.0254 14.9 8.503 4319 18.4 3.08
187.14 0.637 3.24 0.842 0.198 -2.24 -- -10 -0.0262 13.9 6.685 4322 18.3 2.99
227.59 0.703 3.24 0.239 0.33 -2.64 -- -- -0.0514 12.6 8.797 4319 18.2 2.71
189.5 0.641 3.24 0.832 -- -2.24 -- -10.1 -0.0301 -- 6.675 4322 18.3 3
384.88 0.92 3.2 0.613 0.261 -- 0.706 -- -0.169 13.6 -- -- -- --
386.78 0.921 3.19 0.635 0.261 -- -- -- -0.166 13 -- -- -- --
228.31 0.704 3.24 0.212 -- -2.74 -- -- -0.0557 -- 8.792 4319 18.2 2.68
227.41 0.702 3.24 -- 0.181 -2.76 -- -- -0.0678 12.6 8.794 4319 18.2 2.72
391.03 0.924 3.2 0.626 -- -- -- -- -0.171 -- -- -- -- --
397.42 0.933 3.21 -- 0.251 -- -- -- -0.237 12.9 -- -- -- --
227.23 0.702 3.23 -- -- -2.78 -- -- -0.054 -- 8.719 4319 18.3 2.2
401.35 0.935 3.21 -- -- -- -- -- -0.24 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 198.43 wind 7 4320 < th dose independent rect. 18 3
2 198.69 wind 7 4320 < th dose independent rect. 18 5
6 202.55 wind 5 4320 > th dose dependent rect. 20 3
7 202.79 wind 7 4320 > th dose independent rect. 18 3
15 204.47 wind 7 4320 < th dose independent rect. 18 9
39 207.39 humidity 90 1440 < th dose dependent rect. 3 1
40 207.41 wind 9 4320 > th dose dependent rect. 20 2
46 207.45 wind 9 4320 > th dose independent rect. 18 8
138 215.26 humidity 90 1440 < th dose dependent rect. 23 8
148 217.41 humidity 90 1440 < th dose dependent rect. 2 5
152 220.11 atmosphere 995 14400 < th dose independent rect. 18 1
155 220.11 atmosphere 995 14400 < th dose dependent rect. 18 1
158 220.13 atmosphere 995 14400 < th dose independent rect. 16 3
162 220.14 atmosphere 995 14400 < th dose dependent rect. 16 3
168 220.15 atmosphere 995 14400 < th dose dependent rect. 16 1
178 220.82 humidity 80 1440 < th dose independent rect. 22 1
179 220.98 atmosphere 995 14400 > th dose independent rect. 16 2
244 224.80 atmosphere 995 14400 > th dose independent rect. 8 11
249 224.89 atmosphere 995 14400 > th dose independent rect. 11 8
427 233.60 humidity 90 1440 < th dose dependent rect. 5 1
428 233.71 humidity 70 1440 > th dose dependent rect. 24 7
503 235.50 atmosphere 995 14400 > th dose independent rect. 19 21
534 236.52 atmosphere 995 14400 > th dose independent sin 22 NA
550 236.78 atmosphere 995 14400 < th dose independent sin 22 NA
561 237.12 atmosphere 995 14400 > th dose independent sin 3 NA
573 237.30 atmosphere 995 14400 < th dose dependent sin 23 NA
595 237.95 atmosphere 995 14400 < th dose independent sin 3 NA
625 238.45 humidity 90 1440 < th dose dependent rect. 24 1
634 238.68 humidity 70 1440 > th dose dependent rect. 3 1
638 238.74 temperature 20 1440 > th dose independent rect. 18 1
674 239.14 humidity 80 1440 > th dose independent rect. 22 1
714 239.44 humidity 70 1440 > th dose dependent rect. 1 3
846 240.30 atmosphere 995 14400 > th dose independent no NA NA
848 240.30 atmosphere 995 14400 > th dose independent rect. 10 23
849 240.30 atmosphere 995 14400 > th dose independent rect. 12 23
850 240.30 atmosphere 995 14400 > th dose independent rect. 14 23
860 240.34 atmosphere 995 14400 > th dose independent rect. 12 21