Os04g0552000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Expansin/Lol pI family protein.
FiT-DB / Search/ Help/ Sample detail
|
Os04g0552000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Expansin/Lol pI family protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 170.75 | 0.614 | 12.6 | 0.648 | 0.707 | -1.15 | 0.614 | -0.567 | -0.106 | 8.46 | 21.9 | 1396 | -- | -- |
| 170.87 | 0.609 | 12.6 | 0.781 | 0.693 | -1.09 | 0.686 | -- | -0.0527 | 8.43 | 22.2 | 1433 | -- | -- |
| 171.84 | 0.611 | 12.6 | 0.669 | 0.707 | -1.12 | -- | -0.531 | -0.102 | 8.5 | 22 | 1403 | -- | -- |
| 172.03 | 0.611 | 12.6 | 0.797 | 0.701 | -1.08 | -- | -- | -0.0573 | 8.51 | 22.2 | 1373 | -- | -- |
| 188.38 | 0.639 | 12.6 | 0.742 | -- | -1.11 | -- | -0.205 | -0.0458 | -- | 22.2 | 810 | -- | -- |
| 215.46 | 0.688 | 12.7 | 0.395 | 0.71 | -- | 0.529 | -- | -0.424 | 8.78 | -- | -- | -- | -- |
| 216.36 | 0.689 | 12.7 | 0.414 | 0.706 | -- | -- | -- | -0.423 | 8.91 | -- | -- | -- | -- |
| 188.69 | 0.64 | 12.6 | 0.774 | -- | -1.1 | -- | -- | -0.0487 | -- | 22.23 | 809 | -- | -- |
| 186.73 | 0.636 | 12.6 | -- | 0.654 | -0.882 | -- | -- | -0.198 | 8.25 | 22.36 | 1147 | -- | -- |
| 244.85 | 0.731 | 12.7 | 0.413 | -- | -- | -- | -- | -0.419 | -- | -- | -- | -- | -- |
| 220.87 | 0.695 | 12.7 | -- | 0.707 | -- | -- | -- | -0.469 | 8.86 | -- | -- | -- | -- |
| 203.29 | 0.664 | 12.6 | -- | -- | -0.951 | -- | -- | -0.171 | -- | 22.38 | 802 | -- | -- |
| 249.36 | 0.737 | 12.7 | -- | -- | -- | -- | -- | -0.464 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 172.90 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 12 |
| 26 | 173.38 | temperature | 25 | 1440 | < th | dose dependent | sin | 14 | NA |
| 71 | 174.04 | temperature | 25 | 1440 | < th | dose dependent | rect. | 20 | 3 |
| 75 | 174.07 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 78 | 174.11 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 3 |
| 87 | 174.17 | temperature | 15 | 270 | > th | dose dependent | rect. | 8 | 23 |
| 92 | 174.23 | temperature | 25 | 1440 | < th | dose dependent | rect. | 3 | 1 |
| 98 | 174.29 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 1 |
| 147 | 174.78 | temperature | 10 | 1440 | > th | dose dependent | rect. | 1 | 4 |
| 165 | 174.88 | temperature | 15 | 1440 | > th | dose dependent | rect. | 23 | 6 |
| 182 | 174.97 | temperature | 15 | 1440 | > th | dose dependent | rect. | 1 | 1 |
| 209 | 175.11 | temperature | 10 | 1440 | > th | dose dependent | rect. | 3 | 1 |
| 276 | 175.45 | temperature | 15 | 270 | > th | dose dependent | rect. | 10 | 23 |
| 308 | 175.62 | temperature | 25 | 1440 | < th | dose dependent | no | NA | NA |
| 320 | 175.68 | temperature | 15 | 270 | > th | dose dependent | rect. | 23 | 23 |
| 323 | 175.72 | temperature | 25 | 1440 | < th | dose dependent | rect. | 20 | 23 |
| 338 | 175.79 | temperature | 25 | 1440 | < th | dose dependent | rect. | 24 | 23 |
| 358 | 175.88 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 23 |
| 372 | 175.92 | temperature | 25 | 1440 | < th | dose dependent | rect. | 3 | 23 |
| 385 | 175.97 | temperature | 15 | 270 | > th | dose dependent | rect. | 20 | 23 |
| 452 | 176.30 | temperature | 15 | 270 | > th | dose dependent | no | NA | NA |
| 499 | 176.43 | temperature | 15 | 720 | > th | dose dependent | rect. | 17 | 22 |
| 509 | 176.47 | temperature | 15 | 270 | > th | dose dependent | rect. | 1 | 23 |
| 644 | 176.99 | temperature | 15 | 720 | > th | dose dependent | rect. | 19 | 20 |
| 659 | 177.06 | temperature | 15 | 1440 | > th | dose dependent | sin | 11 | NA |
| 668 | 177.10 | temperature | 15 | 720 | > th | dose dependent | rect. | 23 | 21 |
| 713 | 177.22 | temperature | 15 | 720 | > th | dose dependent | rect. | 21 | 18 |
| 749 | 177.34 | temperature | 15 | 720 | > th | dose dependent | rect. | 17 | 18 |
| 869 | 177.69 | temperature | 15 | 720 | > th | dose dependent | rect. | 1 | 19 |
| 911 | 177.80 | temperature | 15 | 720 | > th | dose dependent | rect. | 14 | 23 |
| 979 | 177.98 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 16 |