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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0823100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Alpha-expansin OsEXPA2.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.99 (0.13) R2 : 0.696
β1 : -14.3 (0.786) R2dD : 1.08 R2D : 0.0374
β2 : 1.48 (0.261) R2dC : 0.0219 R2C : -0.0431
β3 : 7.51 (0.401) R2dE : 0.452 R2E : -0.0468
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -15.8 (2.74) R2dD*E : 0.111 R2D*E : -0.548
γ1 : -3.21 (0.279) R2dN8 : 0.207 R2N8 : -0.118
σ : 1.85
deviance : 1573.86
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_____
C
peak time of C : 5.81
E
wheather : temperature
threshold : 24.37
memory length : 1182
response mode : > th
dose dependency : dose dependent
G
type of G : sin
peak or start time of G : 12.6
open length of G : --

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
1565.62 1.86 8.99 -14.2 1.48 7.51 -1.84 -15.5 -3.21 5.84 24.37 1181 12.5 --
1682.52 1.91 8.64 -10.6 1.13 7.39 -1.53 -- -2.67 7.31 21.12 1104 11.9 --
1573.86 1.85 8.99 -14.3 1.48 7.51 -- -15.8 -3.21 5.81 24.37 1182 12.6 --
1675.15 1.91 8.56 -10.3 1.29 6.56 -- -- -2.44 6.94 22.54 1104 11.9 --
1611.51 1.87 9.04 -14 -- 8.21 -- -15.4 -3.54 -- 23.15 1084 9.34 --
2912.49 2.53 8.35 -8.5 2.69 -- -0.972 -- -1.48 3.79 -- -- -- --
2915.28 2.53 8.35 -8.49 2.68 -- -- -- -1.47 3.76 -- -- -- --
1709.33 1.93 8.64 -10.3 -- 7.05 -- -- -2.69 -- 21.76 1060 9.75 --
4233.45 3.03 8 -- 1.98 3.68 -- -- 0.0455 4.56 28.4 1107 8.71 --
3312.84 2.69 8.36 -8.38 -- -- -- -- -1.4 -- -- -- -- --
4813.92 3.25 8.14 -- 2.52 -- -- -- -0.526 3.79 -- -- -- --
4290.83 3.05 8.32 -- -- 5.19 -- -- -1.24 -- 22.17 887 7.9 --
5163.48 3.35 8.15 -- -- -- -- -- -0.47 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 1565.18 wind 5 43200 > th dose dependent rect. 9 7
3 1572.73 wind 5 43200 > th dose dependent rect. 5 11
14 1586.33 wind 7 43200 < th dose independent rect. 5 11
17 1590.12 wind 5 43200 > th dose independent rect. 5 12
20 1591.73 wind 5 43200 > th dose independent rect. 9 7
31 1595.05 wind 7 43200 > th dose independent rect. 2 14
36 1598.00 wind 5 43200 > th dose dependent sin 0 NA
40 1599.13 wind 7 43200 < th dose independent rect. 24 16
43 1599.52 wind 7 43200 > th dose independent rect. 24 16
110 1618.48 wind 7 43200 < th dose independent sin 2 NA
122 1620.16 wind 5 43200 > th dose independent sin 1 NA
138 1621.79 wind 5 43200 > th dose dependent rect. 4 17
165 1627.16 wind 7 43200 > th dose independent rect. 20 20
208 1633.86 wind 7 43200 < th dose independent rect. 20 20
225 1637.34 wind 5 43200 > th dose dependent rect. 20 21
236 1638.46 temperature 25 1440 > th dose dependent rect. 16 1
263 1642.33 temperature 25 1440 > th dose dependent rect. 15 18
290 1645.74 wind 5 43200 > th dose independent rect. 3 19
292 1645.94 wind 5 43200 > th dose dependent rect. 10 22
321 1648.16 wind 5 43200 > th dose independent rect. 24 21
325 1648.35 wind 7 43200 < th dose independent rect. 2 19
338 1649.51 wind 7 43200 < th dose independent rect. 4 17
347 1650.54 wind 7 43200 < th dose independent rect. 24 21
419 1655.16 temperature 25 1440 > th dose dependent rect. 16 7
428 1655.75 wind 5 43200 > th dose independent rect. 9 22
469 1658.05 temperature 25 1440 > th dose dependent rect. 15 22
495 1659.66 temperature 25 1440 > th dose dependent rect. 11 22
501 1659.93 wind 5 43200 > th dose dependent no NA NA
516 1660.80 wind 5 43200 < th dose independent rect. 9 23
607 1665.46 temperature 25 1440 > th dose dependent rect. 3 20
698 1668.44 temperature 25 1440 > th dose dependent sin 17 NA
716 1669.13 temperature 25 1440 > th dose dependent no NA NA
718 1669.15 temperature 25 1440 > th dose dependent rect. 6 23
726 1669.40 temperature 25 1440 > th dose dependent rect. 11 12
749 1670.30 temperature 25 1440 > th dose dependent rect. 21 23
759 1670.67 wind 5 43200 > th dose independent no NA NA
763 1670.87 wind 5 43200 > th dose dependent rect. 13 23
766 1670.94 wind 5 43200 < th dose independent no NA NA
896 1674.81 temperature 25 1440 > th dose dependent rect. 11 18