Os02g0658800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Beta-expansin.
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Os02g0658800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Beta-expansin.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1678 | 1.92 | 5.33 | -7.07 | 0.812 | 4.49 | -0.526 | -15.8 | -2.18 | 6.91 | 25.98 | 1263 | -- | -- |
| 1746.28 | 1.95 | 4.82 | -3.11 | 0.849 | 2.85 | -0.422 | -- | -1.18 | 6.42 | 26.37 | 1256 | -- | -- |
| 1677.61 | 1.91 | 5.33 | -7.18 | 0.863 | 4.59 | -- | -16.6 | -2.12 | 6.76 | 26.26 | 1254 | -- | -- |
| 1746.02 | 1.95 | 4.83 | -3.1 | 0.773 | 2.85 | -- | -- | -1.23 | 6.79 | 26.2 | 1244 | -- | -- |
| 1712.2 | 1.93 | 5.33 | -7.05 | -- | 4.52 | -- | -16 | -2.06 | -- | 26.29 | 1274 | -- | -- |
| 2069.88 | 2.13 | 4.8 | -2.22 | 0.974 | -- | 0.0873 | -- | -1.1 | 4.79 | -- | -- | -- | -- |
| 2069.9 | 2.13 | 4.8 | -2.22 | 0.975 | -- | -- | -- | -1.1 | 4.8 | -- | -- | -- | -- |
| 1775.72 | 1.96 | 4.85 | -3.11 | -- | 2.83 | -- | -- | -1.24 | -- | 26.14 | 1283 | -- | -- |
| 1979.45 | 2.07 | 4.7 | -- | 0.778 | 2.18 | -- | -- | -0.668 | 6.23 | 27.8 | 1242 | -- | -- |
| 2120.17 | 2.15 | 4.81 | -2.18 | -- | -- | -- | -- | -1.08 | -- | -- | -- | -- | -- |
| 2199.65 | 2.19 | 4.75 | -- | 0.935 | -- | -- | -- | -0.855 | 4.87 | -- | -- | -- | -- |
| 2009.89 | 2.09 | 4.72 | -- | -- | 2.2 | -- | -- | -0.665 | -- | 27.72 | 1263 | -- | -- |
| 2245.78 | 2.21 | 4.76 | -- | -- | -- | -- | -- | -0.835 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 1694.64 | temperature | 25 | 720 | > th | dose dependent | rect. | 17 | 16 |
| 2 | 1696.12 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 9 |
| 3 | 1696.33 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 18 |
| 21 | 1703.07 | temperature | 25 | 1440 | > th | dose dependent | rect. | 18 | 5 |
| 28 | 1703.99 | temperature | 25 | 1440 | > th | dose dependent | sin | 13 | NA |
| 41 | 1706.41 | temperature | 25 | 1440 | > th | dose dependent | rect. | 16 | 1 |
| 121 | 1715.40 | temperature | 25 | 1440 | > th | dose dependent | rect. | 6 | 18 |
| 164 | 1717.13 | temperature | 25 | 1440 | > th | dose dependent | rect. | 21 | 1 |
| 195 | 1718.18 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 226 | 1719.75 | temperature | 25 | 1440 | > th | dose dependent | rect. | 21 | 23 |
| 229 | 1719.80 | temperature | 25 | 1440 | > th | dose dependent | rect. | 18 | 23 |
| 315 | 1728.24 | radiation | 30 | 1440 | > th | dose independent | rect. | 16 | 16 |
| 366 | 1735.51 | wind | 5 | 43200 | > th | dose dependent | rect. | 11 | 4 |
| 368 | 1736.05 | wind | 5 | 43200 | > th | dose dependent | rect. | 13 | 1 |
| 379 | 1738.46 | radiation | 30 | 14400 | > th | dose independent | rect. | 16 | 1 |
| 435 | 1741.48 | temperature | 30 | 1440 | < th | dose independent | sin | 15 | NA |
| 443 | 1741.73 | temperature | 30 | 1440 | > th | dose independent | sin | 14 | NA |
| 444 | 1741.79 | wind | 7 | 43200 | < th | dose independent | rect. | 10 | 6 |
| 446 | 1741.92 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 18 |
| 448 | 1741.97 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 22 |
| 450 | 1742.03 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 16 |
| 462 | 1742.29 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 11 |
| 465 | 1742.35 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 13 |
| 488 | 1743.21 | wind | 7 | 43200 | > th | dose independent | rect. | 10 | 6 |
| 492 | 1743.29 | temperature | 30 | 1440 | < th | dose independent | rect. | 17 | 23 |
| 517 | 1743.87 | temperature | 30 | 1440 | < th | dose independent | rect. | 24 | 20 |
| 521 | 1743.91 | temperature | 30 | 1440 | < th | dose independent | rect. | 2 | 23 |
| 524 | 1743.94 | temperature | 30 | 1440 | < th | dose independent | rect. | 5 | 22 |
| 545 | 1744.01 | temperature | 30 | 1440 | < th | dose independent | rect. | 21 | 23 |
| 560 | 1744.14 | temperature | 30 | 1440 | < th | dose independent | no | NA | NA |
| 564 | 1744.17 | temperature | 30 | 1440 | < th | dose independent | rect. | 2 | 18 |
| 572 | 1744.23 | temperature | 30 | 1440 | < th | dose independent | rect. | 2 | 20 |
| 579 | 1744.31 | temperature | 30 | 1440 | < th | dose independent | rect. | 5 | 15 |
| 585 | 1744.37 | temperature | 30 | 1440 | < th | dose independent | rect. | 5 | 17 |
| 586 | 1744.37 | temperature | 30 | 1440 | < th | dose independent | rect. | 14 | 23 |
| 642 | 1744.88 | wind | 7 | 43200 | < th | dose independent | rect. | 5 | 11 |
| 654 | 1745.17 | temperature | 30 | 1440 | > th | dose independent | rect. | 9 | 10 |
| 674 | 1745.32 | radiation | 30 | 1440 | > th | dose independent | rect. | 7 | 1 |
| 712 | 1745.77 | wind | 7 | 43200 | > th | dose independent | rect. | 5 | 11 |
| 723 | 1745.90 | radiation | 30 | 1440 | < th | dose independent | rect. | 6 | 2 |
| 806 | 1747.06 | temperature | 30 | 1440 | > th | dose independent | rect. | 14 | 5 |
| 821 | 1747.13 | temperature | 30 | 1440 | > th | dose independent | rect. | 17 | 23 |
| 839 | 1747.58 | temperature | 30 | 1440 | > th | dose independent | no | NA | NA |
| 962 | 1747.67 | temperature | 30 | 1440 | > th | dose independent | rect. | 14 | 23 |