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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os10g0555600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Beta-expansin precursor.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.88 (0.0883) R2 : 0.592
β1 : -6.72 (0.491) R2dD : 0.589 R2D : 0.188
β2 : 2.65 (0.186) R2dC : 0.184 R2C : 0.128
β3 : 3.25 (0.359) R2dE : 0.129 R2E : -0.0645
β4 : -5.6 (0.806) R2dD*C : 0.0448 R2D*C : 0.0217
β5 : -9.34 (2.58) R2dD*E : 0.0452 R2D*E : -0.266
γ1 : -1.54 (0.192) R2dN8 : 0.118 R2N8 : -0.0518
σ : 1.38
deviance : 857.28
__
_____
C
peak time of C : 8.01
E
wheather : temperature
threshold : 26.7
memory length : 934
response mode : > th
dose dependency : dose independent
G
type of G : sin
peak or start time of G : 7.96
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
857.28 1.38 4.88 -6.72 2.65 3.25 -5.6 -9.34 -1.54 8.01 26.7 934 7.96 --
880.78 1.38 4.73 -5.26 2.65 2.32 -5.27 -- -1.29 7.9 26.33 894 8.25 --
942.31 1.43 4.85 -6.9 2.61 2.95 -- -9.55 -1.34 7.63 27.3 993 7.36 --
954.07 1.44 4.73 -5.4 2.83 2.23 -- -- -1.32 7.96 26.3 892 9.78 --
1273.4 1.66 4.94 -6.9 -- 3.46 -- -8.95 -1.47 -- 26.8 1125 7.65 --
991.64 1.48 4.66 -4.85 2.79 -- -4.88 -- -0.939 7.06 -- -- -- --
1052.84 1.52 4.65 -4.95 2.79 -- -- -- -0.93 6.85 -- -- -- --
1291.18 1.67 4.91 -5.46 -- 3.19 -- -- -1.78 -- 25.37 1040 7.88 --
1678.37 1.91 4.56 -- 2.81 0.979 -- -- -0.587 7.56 25.4 828 9.93 --
1460.55 1.79 4.71 -4.89 -- -- -- -- -0.877 -- -- -- -- --
1698.13 1.93 4.53 -- 2.73 -- -- -- -0.379 6.96 -- -- -- --
1935.81 2.06 4.5 -- -- -1.72 -- -- 0.0668 -- 25.4 828 9.93 --
2090.7 2.13 4.59 -- -- -- -- -- -0.335 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 865.57 temperature 20.0 270 > th dose independent rect. 24 9
2 867.17 temperature 25.0 720 > th dose dependent rect. 21 2
3 868.68 temperature 10.0 270 > th dose dependent rect. 24 9
4 868.71 temperature 25.0 720 > th dose dependent rect. 18 5
18 873.78 temperature 25.0 720 > th dose dependent rect. 18 14
52 878.09 temperature 30.0 720 > th dose dependent rect. 18 1
69 879.88 humidity 50.0 1440 < th dose independent rect. 16 1
71 880.42 temperature 25.0 270 < th dose independent rect. 23 1
72 880.47 humidity 50.0 1440 < th dose dependent rect. 16 1
80 881.70 temperature 20.0 270 > th dose independent rect. 14 18
82 881.93 temperature 20.0 270 > th dose independent rect. 13 20
85 882.37 temperature 25.0 10 < th dose independent rect. 23 4
95 883.28 temperature 25.0 720 > th dose independent rect. 18 6
102 884.04 radiation 1.0 720 > th dose dependent rect. 18 11
105 884.30 temperature 25.0 720 < th dose independent rect. 18 6
108 884.51 temperature 25.0 90 < th dose independent rect. 22 5
111 884.59 temperature 20.0 720 > th dose dependent sin 13 NA
113 884.67 humidity 70.0 720 < th dose independent rect. 18 13
116 884.86 humidity 70.0 720 < th dose independent rect. 18 2
158 886.40 temperature 20.0 90 > th dose independent rect. 3 6
242 890.85 humidity 50.0 1440 > th dose independent rect. 16 1
256 891.34 temperature 30.0 720 < th dose dependent rect. 19 6
262 891.62 radiation 1.0 720 > th dose dependent rect. 18 1
272 891.62 temperature 20.0 270 > th dose dependent rect. 14 18
282 892.19 humidity 70.0 720 < th dose dependent rect. 18 1
283 892.21 wind 9.0 1440 < th dose independent rect. 24 4
292 892.65 humidity 70.0 720 < th dose dependent rect. 18 13
317 893.56 atmosphere 1015.0 270 < th dose independent rect. 24 22
349 895.05 atmosphere 1000.0 90 > th dose independent rect. 3 19
351 895.09 temperature 30.0 90 < th dose dependent rect. 22 5
366 895.68 humidity 90.0 14400 < th dose independent rect. 2 1
367 895.71 temperature 20.0 90 > th dose dependent rect. 3 2
370 895.76 temperature 15.0 90 > th dose dependent rect. 3 6
396 896.69 radiation 40.0 270 < th dose independent rect. 24 10
403 896.87 temperature 15.0 270 > th dose independent rect. 22 2
414 897.27 temperature 10.0 10 > th dose dependent rect. 3 20
416 897.51 atmosphere 1000.0 10 > th dose independent rect. 4 19
425 897.81 temperature 20.0 10 > th dose dependent sin 10 NA
439 897.91 temperature 20.0 270 > th dose independent rect. 24 21
446 898.14 temperature 30.0 270 < th dose dependent rect. 23 1
452 898.44 humidity 50.0 270 > th dose dependent rect. 24 9
457 898.71 temperature 15.0 10 > th dose independent rect. 23 4
469 898.94 temperature 15.0 90 > th dose independent rect. 22 5
495 899.80 temperature 20.0 90 > th dose dependent rect. 3 4
505 900.08 wind 3.0 90 < th dose dependent rect. 3 2
514 900.39 wind 3.0 10 < th dose dependent rect. 3 6
524 900.68 radiation 30.0 1440 > th dose independent rect. 16 16
530 900.91 radiation 10.0 43200 > th dose independent rect. 10 1
565 901.47 wind 7.0 270 < th dose independent rect. 22 2
566 901.49 radiation 40.0 270 < th dose dependent rect. 24 10
568 901.52 precipitation 0.1 270 < th dose independent rect. 24 22
569 901.52 precipitation 0.1 270 < th dose dependent rect. 24 22
577 901.68 humidity 50.0 270 > th dose independent rect. 22 2
580 901.68 atmosphere 995.0 270 > th dose independent rect. 22 2
581 901.68 radiation 1.0 270 < th dose independent rect. 22 2
586 901.68 temperature 10.0 270 > th dose independent rect. 24 22
587 901.68 radiation 1.0 270 < th dose dependent rect. 22 2
594 901.71 precipitation 0.1 270 < th dose independent rect. 22 2
595 901.71 precipitation 0.1 270 < th dose dependent rect. 22 2
596 901.77 wind 9.0 270 < th dose dependent rect. 22 2
604 901.99 temperature 20.0 270 > th dose independent rect. 2 3
609 902.08 wind 1.0 90 < th dose independent rect. 4 1
618 902.19 atmosphere 995.0 270 > th dose independent rect. 24 22
619 902.21 temperature 30.0 720 > th dose independent rect. 18 1
638 902.47 temperature 25.0 270 < th dose independent rect. 11 14
659 902.82 wind 7.0 90 < th dose independent rect. 22 5
660 902.83 precipitation 0.1 90 < th dose independent rect. 3 19
662 902.83 precipitation 0.1 90 < th dose dependent rect. 3 19
670 903.01 humidity 50.0 90 > th dose independent rect. 22 5
673 903.01 atmosphere 995.0 90 > th dose independent rect. 22 5
674 903.01 radiation 1.0 90 < th dose independent rect. 22 5
679 903.01 temperature 10.0 90 > th dose independent rect. 3 19
680 903.01 atmosphere 1015.0 90 < th dose independent rect. 3 19
681 903.01 radiation 1.0 90 < th dose dependent rect. 22 5
688 903.03 wind 3.0 90 < th dose dependent rect. 3 6
689 903.06 precipitation 0.1 90 < th dose independent rect. 22 5
690 903.06 precipitation 0.1 90 < th dose dependent rect. 22 5
707 903.36 temperature 20.0 90 > th dose independent rect. 3 19
708 903.36 temperature 25.0 10 < th dose dependent rect. 23 12
715 903.54 temperature 30.0 720 < th dose dependent sin 13 NA
758 903.99 humidity 90.0 43200 < th dose independent rect. 1 14
767 904.08 wind 9.0 43200 > th dose dependent rect. 13 20
771 904.15 precipitation 0.1 10 < th dose independent rect. 3 20
772 904.15 precipitation 0.1 10 < th dose dependent rect. 3 20
791 904.32 wind 7.0 10 < th dose independent rect. 23 4
800 904.45 precipitation 0.1 10 < th dose independent rect. 23 4
801 904.45 precipitation 0.1 10 < th dose dependent rect. 23 4
809 904.49 humidity 50.0 10 > th dose independent rect. 23 4
812 904.49 atmosphere 995.0 10 > th dose independent rect. 23 4
813 904.49 radiation 1.0 10 < th dose independent rect. 23 4
819 904.49 temperature 10.0 10 > th dose independent rect. 3 20
821 904.49 atmosphere 1015.0 10 < th dose independent rect. 3 20
822 904.49 radiation 1.0 10 < th dose dependent rect. 23 4
840 904.76 humidity 90.0 43200 < th dose independent rect. 2 9
886 905.07 wind 3.0 43200 > th dose dependent rect. 10 6
896 905.28 wind 3.0 43200 > th dose dependent rect. 12 3
915 905.39 temperature 20.0 10 > th dose dependent rect. 16 18
935 905.64 temperature 30.0 720 < th dose dependent rect. 18 12
962 905.83 wind 9.0 90 < th dose dependent rect. 22 5
970 905.91 wind 1.0 270 > th dose independent rect. 22 2
971 905.92 wind 3.0 43200 > th dose dependent rect. 13 1
975 905.96 wind 5.0 43200 > th dose independent rect. 12 4
977 905.97 wind 3.0 43200 > th dose dependent rect. 9 8