Os03g0132200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Expansin-like protein A.
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Os03g0132200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Expansin-like protein A.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 165.21 | 0.604 | 12.4 | -0.419 | 1.75 | 1.37 | 0.00638 | -0.024 | -0.167 | 23.4 | 74.14 | 841 | -- | -- |
| 165.19 | 0.599 | 12.4 | -0.415 | 1.76 | 1.39 | 0.018 | -- | -0.168 | 23.3 | 74.29 | 831 | -- | -- |
| 165.18 | 0.599 | 12.4 | -0.415 | 1.75 | 1.38 | -- | -0.0446 | -0.168 | 23.3 | 74.29 | 831 | -- | -- |
| 165.19 | 0.599 | 12.4 | -0.421 | 1.75 | 1.38 | -- | -- | -0.169 | 23.3 | 74.32 | 831 | -- | -- |
| 215.61 | 0.688 | 12.4 | -0.459 | -- | 0.904 | -- | 0.353 | -0.223 | -- | 73.19 | 4567 | -- | -- |
| 199.41 | 0.662 | 12.4 | -0.567 | 1.27 | -- | -0.00778 | -- | -0.25 | 0.729 | -- | -- | -- | -- |
| 199.41 | 0.661 | 12.4 | -0.566 | 1.27 | -- | -- | -- | -0.25 | 0.729 | -- | -- | -- | -- |
| 216.34 | 0.688 | 12.4 | -0.448 | -- | 0.907 | -- | -- | -0.219 | -- | 73.19 | 4567 | -- | -- |
| 169.79 | 0.607 | 12.4 | -- | 1.77 | 1.46 | -- | -- | -0.125 | 23.2 | 74 | 824 | -- | -- |
| 299.6 | 0.809 | 12.4 | -0.521 | -- | -- | -- | -- | -0.227 | -- | -- | -- | -- | -- |
| 207.87 | 0.674 | 12.4 | -- | 1.26 | -- | -- | -- | -0.187 | 0.708 | -- | -- | -- | -- |
| 221.63 | 0.696 | 12.3 | -- | -- | 0.916 | -- | -- | -0.169 | -- | 73.19 | 4567 | -- | -- |
| 306.76 | 0.818 | 12.3 | -- | -- | -- | -- | -- | -0.17 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 163.20 | humidity | 80 | 720 | > th | dose independent | rect. | 7 | 13 |
| 3 | 163.85 | humidity | 50 | 720 | > th | dose dependent | rect. | 15 | 5 |
| 4 | 163.95 | humidity | 80 | 1440 | < th | dose independent | rect. | 7 | 8 |
| 11 | 164.42 | humidity | 80 | 1440 | > th | dose independent | rect. | 11 | 3 |
| 13 | 164.48 | humidity | 80 | 1440 | < th | dose independent | rect. | 11 | 3 |
| 14 | 164.50 | radiation | 1 | 720 | > th | dose independent | rect. | 10 | 20 |
| 15 | 164.55 | humidity | 80 | 720 | < th | dose independent | rect. | 11 | 10 |
| 25 | 164.95 | humidity | 80 | 1440 | < th | dose independent | sin | 1 | NA |
| 32 | 165.16 | humidity | 70 | 720 | > th | dose dependent | rect. | 8 | 12 |
| 45 | 165.33 | humidity | 80 | 720 | > th | dose independent | sin | 21 | NA |
| 46 | 165.34 | humidity | 80 | 1440 | > th | dose independent | rect. | 7 | 9 |
| 61 | 165.68 | humidity | 80 | 1440 | > th | dose independent | sin | 0 | NA |
| 69 | 165.74 | temperature | 25 | 720 | > th | dose dependent | rect. | 18 | 22 |
| 70 | 165.75 | temperature | 10 | 270 | > th | dose dependent | rect. | 10 | 13 |
| 76 | 165.82 | radiation | 1 | 43200 | < th | dose dependent | rect. | 21 | 6 |
| 77 | 165.87 | humidity | 80 | 720 | > th | dose independent | rect. | 7 | 19 |
| 98 | 166.10 | humidity | 70 | 720 | > th | dose dependent | rect. | 8 | 17 |
| 102 | 166.13 | humidity | 50 | 720 | > th | dose dependent | rect. | 8 | 18 |
| 119 | 166.27 | temperature | 25 | 720 | > th | dose dependent | rect. | 9 | 14 |
| 129 | 166.33 | humidity | 80 | 720 | < th | dose independent | sin | 21 | NA |
| 137 | 166.38 | humidity | 70 | 720 | > th | dose dependent | sin | 20 | NA |
| 157 | 166.51 | radiation | 1 | 720 | < th | dose dependent | rect. | 7 | 12 |
| 200 | 166.79 | temperature | 25 | 720 | > th | dose dependent | rect. | 9 | 23 |
| 206 | 166.82 | temperature | 25 | 720 | > th | dose dependent | rect. | 6 | 18 |
| 254 | 167.01 | temperature | 20 | 10 | > th | dose dependent | rect. | 12 | 13 |
| 299 | 167.22 | wind | 5 | 43200 | > th | dose dependent | rect. | 13 | 8 |
| 301 | 167.23 | radiation | 1 | 720 | < th | dose dependent | rect. | 10 | 9 |
| 317 | 167.28 | wind | 7 | 43200 | < th | dose independent | rect. | 13 | 8 |
| 344 | 167.37 | temperature | 25 | 10 | > th | dose dependent | rect. | 12 | 18 |
| 356 | 167.40 | temperature | 25 | 720 | > th | dose dependent | sin | 21 | NA |
| 357 | 167.40 | temperature | 25 | 720 | > th | dose dependent | no | NA | NA |
| 366 | 167.44 | radiation | 1 | 720 | < th | dose independent | rect. | 13 | 14 |
| 394 | 167.55 | radiation | 1 | 720 | < th | dose independent | rect. | 11 | 16 |
| 407 | 167.59 | wind | 7 | 43200 | > th | dose independent | rect. | 14 | 7 |
| 418 | 167.64 | temperature | 25 | 10 | > th | dose dependent | rect. | 12 | 15 |
| 450 | 167.81 | wind | 7 | 43200 | > th | dose independent | rect. | 15 | 1 |
| 451 | 167.81 | wind | 7 | 43200 | < th | dose independent | rect. | 15 | 1 |
| 453 | 167.81 | temperature | 20 | 720 | > th | dose dependent | rect. | 11 | 4 |
| 459 | 167.83 | temperature | 20 | 720 | > th | dose dependent | rect. | 10 | 6 |
| 460 | 167.84 | radiation | 1 | 720 | < th | dose independent | rect. | 10 | 9 |
| 479 | 167.92 | radiation | 1 | 720 | < th | dose independent | rect. | 7 | 12 |
| 480 | 167.92 | temperature | 10 | 720 | > th | dose dependent | rect. | 10 | 6 |
| 481 | 167.92 | humidity | 50 | 720 | > th | dose dependent | rect. | 13 | 14 |
| 497 | 167.98 | radiation | 1 | 720 | < th | dose independent | rect. | 13 | 6 |
| 507 | 168.02 | wind | 5 | 43200 | > th | dose dependent | rect. | 13 | 3 |
| 514 | 168.04 | humidity | 70 | 720 | > th | dose independent | rect. | 14 | 6 |
| 542 | 168.12 | wind | 5 | 43200 | > th | dose dependent | rect. | 13 | 5 |
| 545 | 168.14 | temperature | 25 | 10 | > th | dose dependent | sin | 17 | NA |
| 562 | 168.21 | radiation | 1 | 720 | < th | dose independent | rect. | 7 | 20 |
| 605 | 168.36 | humidity | 90 | 720 | < th | dose dependent | rect. | 11 | 12 |
| 628 | 168.44 | humidity | 80 | 1440 | > th | dose dependent | rect. | 11 | 3 |
| 679 | 168.63 | wind | 7 | 43200 | < th | dose independent | rect. | 13 | 4 |
| 693 | 168.66 | humidity | 70 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 694 | 168.66 | radiation | 1 | 720 | < th | dose dependent | rect. | 13 | 14 |
| 703 | 168.70 | humidity | 70 | 720 | > th | dose independent | rect. | 14 | 13 |
| 756 | 168.81 | radiation | 1 | 720 | < th | dose dependent | rect. | 11 | 16 |
| 769 | 168.85 | radiation | 10 | 720 | < th | dose dependent | rect. | 15 | 3 |
| 820 | 169.00 | wind | 7 | 43200 | < th | dose independent | rect. | 13 | 12 |
| 828 | 169.02 | humidity | 70 | 14400 | < th | dose dependent | rect. | 17 | 15 |
| 851 | 169.07 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 2 |
| 862 | 169.10 | humidity | 60 | 14400 | < th | dose independent | rect. | 16 | 3 |
| 871 | 169.12 | humidity | 60 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 880 | 169.14 | humidity | 70 | 14400 | < th | dose dependent | rect. | 16 | 17 |
| 960 | 169.34 | radiation | 1 | 720 | < th | dose dependent | rect. | 7 | 20 |
| 975 | 169.37 | wind | 5 | 43200 | > th | dose independent | rect. | 9 | 12 |
| 978 | 169.38 | wind | 7 | 43200 | > th | dose independent | rect. | 13 | 12 |
| 993 | 169.41 | wind | 5 | 43200 | > th | dose independent | rect. | 11 | 11 |
| 997 | 169.42 | humidity | 90 | 720 | < th | dose dependent | sin | 18 | NA |