BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0132200 Os03g0132200|AK099870
(279 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G45970.1 | chr3:16896238-16897189 FORWARD LENGTH=266 226 9e-60
AT4G38400.1 | chr4:17978675-17979665 REVERSE LENGTH=266 226 9e-60
AT3G45960.2 | chr3:16892826-16893789 FORWARD LENGTH=264 212 1e-55
AT4G17030.1 | chr4:9581817-9583181 REVERSE LENGTH=251 124 7e-29
AT4G28250.1 | chr4:14000446-14001945 REVERSE LENGTH=265 81 6e-16
AT2G20750.1 | chr2:8941185-8942430 FORWARD LENGTH=272 81 8e-16
AT1G65680.1 | chr1:24427266-24428399 FORWARD LENGTH=274 79 2e-15
AT1G65681.1 | chr1:24428875-24430670 FORWARD LENGTH=224 64 1e-10
AT2G45110.1 | chr2:18599575-18601237 FORWARD LENGTH=260 62 2e-10
AT5G39260.1 | chr5:15726479-15727416 REVERSE LENGTH=263 58 7e-09
>AT3G45970.1 | chr3:16896238-16897189 FORWARD LENGTH=266
Length = 265
Score = 226 bits (577), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 106/200 (53%), Positives = 138/200 (69%), Gaps = 4/200 (2%)
Query: 83 RGGVGCGACYQVRCKDKKLCSNAGARVVVTDRARTNRTGLVLSSXX--XXXXXXXXXXXS 140
+ G GCGAC+QVRCK+ KLCS G V++TD ++N+T LVLSS
Sbjct: 67 KDGAGCGACFQVRCKNPKLCSTKGTIVMITDLNKSNQTDLVLSSRAFRAMAKPIVGADKD 126
Query: 141 LTELAAVDVEYKRVPCEYRHRSLSVRVDERSRGPNELTISFLYQGGQTDIVAVDVAQVGS 200
L + VD+EY+RVPC+Y +++++VRV+E S+ PN L I LYQGGQT++V++D+AQVGS
Sbjct: 127 LLKQGIVDIEYQRVPCDYGNKNMNVRVEEASKKPNYLEIKLLYQGGQTEVVSIDIAQVGS 186
Query: 201 S-SWKFMTREHGPSWSMANAPPGPLQMRLVVTGGYDGKWVWADREVLPRRWRAGEVYDTG 259
S +W +MTR HG W P G +Q R VVTGGYDGK +W+ + VLP W AG++YD G
Sbjct: 187 SPNWGYMTRSHGAVWVTDKVPTGAIQFRFVVTGGYDGKMIWS-QSVLPSNWEAGKIYDAG 245
Query: 260 VQITDIAQEGCFPCDTHEWK 279
VQITDIAQEGC PCD H W
Sbjct: 246 VQITDIAQEGCDPCDAHIWN 265
>AT4G38400.1 | chr4:17978675-17979665 REVERSE LENGTH=266
Length = 265
Score = 226 bits (576), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 109/199 (54%), Positives = 133/199 (66%), Gaps = 3/199 (1%)
Query: 83 RGGVGCGACYQVRCKDKKLCSNAGARVVVTDRARTNRTGLVLSSXXXXXXXXXXXXXS-- 140
+ G GCGAC+QVRCK+ LCS+ G V+VTD +TN+T LVLSS
Sbjct: 68 KDGSGCGACFQVRCKNPTLCSSKGTTVIVTDLNKTNQTDLVLSSRAFRAMAKPVVGADRD 127
Query: 141 LTELAAVDVEYKRVPCEYRHRSLSVRVDERSRGPNELTISFLYQGGQTDIVAVDVAQVGS 200
L + VD+EY+RVPC+Y ++ ++VRV+E S+ PN L I LYQGGQT++VA+ +AQVGS
Sbjct: 128 LLKQGIVDIEYRRVPCDYGNKKMNVRVEESSKNPNYLAIKLLYQGGQTEVVAIYIAQVGS 187
Query: 201 SSWKFMTREHGPSWSMANAPPGPLQMRLVVTGGYDGKWVWADREVLPRRWRAGEVYDTGV 260
S W +MTR HG W P G LQ R VVT GYDGK VW+ R VLP W AG+ YD GV
Sbjct: 188 SHWSYMTRSHGAVWVTDKVPNGALQFRFVVTAGYDGKMVWSQR-VLPANWEAGKSYDAGV 246
Query: 261 QITDIAQEGCFPCDTHEWK 279
QITDIAQEGC PCD H W
Sbjct: 247 QITDIAQEGCDPCDDHIWN 265
>AT3G45960.2 | chr3:16892826-16893789 FORWARD LENGTH=264
Length = 263
Score = 212 bits (540), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 105/199 (52%), Positives = 130/199 (65%), Gaps = 4/199 (2%)
Query: 83 RGGVGCGACYQVRCKDKKLCSNAGARVVVTDRARTNRTGLVLSSXXXXXXXXXXXXXS-- 140
+ G GCGAC+QVRCK+ KLC++ G V+VTD +N+T LVLSS
Sbjct: 67 KDGAGCGACFQVRCKNPKLCNSKGTIVMVTDLNTSNQTDLVLSSRAFRAMAKPVVGVDKY 126
Query: 141 LTELAAVDVEYKRVPCEYRHRSLSVRVDERSRGPNELTISFLYQGGQTDIVAVDVAQVGS 200
L + VDVEY+RVPC Y R+L+VRV+E S+ PN L I LYQGGQT++V +D+A VGS
Sbjct: 127 LLKQGIVDVEYQRVPCNYGKRNLNVRVEEASKKPNYLAIKLLYQGGQTEVVGIDIAPVGS 186
Query: 201 SSWKFMTREHGPSWSMANAPPGPLQMRLVVTGGYDGKWVWADREVLPRRWRAGEVYDTGV 260
S W +M+R HG W+ P G LQ + VTGGYDGK VW+ R VLP W +G +YD GV
Sbjct: 187 SQWSYMSRSHGAVWATDKVPTGALQFKFTVTGGYDGKTVWSKR-VLPANWNSGRIYDAGV 245
Query: 261 QITDIAQEGCFPCDTHEWK 279
QITDIAQEGC C H W
Sbjct: 246 QITDIAQEGCDTCG-HIWN 263
>AT4G17030.1 | chr4:9581817-9583181 REVERSE LENGTH=251
Length = 250
Score = 124 bits (310), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 66/181 (36%), Positives = 88/181 (48%), Gaps = 1/181 (0%)
Query: 83 RGGVGCGACYQVRCKDKKLCSNAGARVVVTDRARTNRTGLVLSSXXXXXXXXXXXXXSLT 142
G GCGACYQVRCK CS G VV TD + T +LS L
Sbjct: 71 NNGTGCGACYQVRCKIPPHCSEEGVYVVATDSGEGDGTDFILSPKAYGRMARPGTENQLY 130
Query: 143 ELAAVDVEYKRVPCEYRHRSLSVRVDERSRGPNELTISFLYQGGQTDIVAVDVAQVGSSS 202
V+VEY+R+PC Y +L ++ E+S P+ L I LY GG DI+AV+V Q
Sbjct: 131 SFGVVNVEYQRIPCRYAGYNLVYKIHEKSYNPHYLAILVLYVGGVNDILAVEVWQEDCKE 190
Query: 203 WKFMTREHGPSWSMANAPPGPLQMRLVVTGGYDGKWVWADREVLPRRWRAGEVYDTGVQI 262
W+ M R G + N P G L +R +V G W+ + + P W AG YD+ + +
Sbjct: 191 WRRMRRVFGAVHDLQNPPRGTLTLRFLVYGSAGINWIQSPNAI-PADWTAGATYDSNILL 249
Query: 263 T 263
T
Sbjct: 250 T 250
>AT4G28250.1 | chr4:14000446-14001945 REVERSE LENGTH=265
Length = 264
Score = 81.3 bits (199), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 86/189 (45%), Gaps = 12/189 (6%)
Query: 83 RGGVGCGACYQVRCKDKKLCSNAGARVVVTDR---ARTNRTGLVLSSXXXXXXXXXXXXX 139
+ G GCGACY+VRC DK +CS V++TD T LS
Sbjct: 81 KNGEGCGACYKVRCLDKSICSRRAVTVIITDECPGCSKTSTHFDLSGAVFGRLAIAGESG 140
Query: 140 SLTELAAVDVEYKRVPCEYRHRSLSVRVDERSRGPNELTISFL--YQGGQTDIVAVDVAQ 197
L + V Y+R C+YR ++++ V+E G + +S L ++ G+ DI ++ + Q
Sbjct: 141 PLRNRGLIPVIYRRTACKYRGKNIAFHVNE---GSTDFWLSLLVEFEDGEGDIGSMHIRQ 197
Query: 198 VGSSSWKFMTREHGPSWSMANAP-PGPLQMRLVVTGGYDGKWVWADREVLPRRWRAGEVY 256
G+ W M G +W + P GP ++L GK + A +V+PR W Y
Sbjct: 198 AGAREWLEMKHVWGANWCIIGGPLKGPFSIKLTTLSA--GKTLSAT-DVVPRNWAPKATY 254
Query: 257 DTGVQITDI 265
+ + + +
Sbjct: 255 SSRLNFSPV 263
>AT2G20750.1 | chr2:8941185-8942430 FORWARD LENGTH=272
Length = 271
Score = 80.9 bits (198), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 49/192 (25%), Positives = 85/192 (44%), Gaps = 15/192 (7%)
Query: 83 RGGVGCGACYQVRCKDKKLCSNAGARVVVTDR------ARTNRTGLVLSSXXXXXXXXXX 136
+GG GCGACY+VRC DK +CS ++ TD+ A+ T LS
Sbjct: 85 KGGEGCGACYKVRCLDKTICSKRAVTIIATDQSPSGPSAKAKHTHFDLSGAAFGHMAIPG 144
Query: 137 XXXSLTELAAVDVEYKRVPCEYRHRSLSVRVDERSRGPNELTISFL--YQGGQTDIVAVD 194
+ +++ Y+R C+YR ++++ V+ G + +S L Y+ G+ DI ++
Sbjct: 145 HNGVIRNRGLLNILYRRTACKYRGKNIAFHVNA---GSTDYWLSLLIEYEDGEGDIGSMH 201
Query: 195 VAQVGSSSWKFMTREHGPSWSMANAP-PGPLQMRLVVTGGYDGKWVWADREVLPRRWRAG 253
+ Q GS W M G +W + P GP ++L + +V+P W
Sbjct: 202 IRQAGSKEWISMKHIWGANWCIVEGPLKGPFSVKLTT---LSNNKTLSATDVIPSNWVPK 258
Query: 254 EVYDTGVQITDI 265
Y + + + +
Sbjct: 259 ATYTSRLNFSPV 270
>AT1G65680.1 | chr1:24427266-24428399 FORWARD LENGTH=274
Length = 273
Score = 79.0 bits (193), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/186 (29%), Positives = 82/186 (44%), Gaps = 10/186 (5%)
Query: 83 RGGVGCGACYQVRCKDKKLCSNAGARVVVTDRAR---TNRTGLVLSSXXXXXXXXXXXXX 139
+ G GCGACYQV+C K CS VV+TD LS
Sbjct: 92 KSGKGCGACYQVKCTSKSACSKNPVTVVITDECPGCVKESVHFDLSGTAFGAMAISGQDS 151
Query: 140 SLTELAAVDVEYKRVPCEYRHRSLSVRVDERSRGPNELTISFLYQGGQTDIVAVDVAQ-V 198
L + + + YK+V C Y ++++ +VD+ S N + Y G +I +++ Q +
Sbjct: 152 QLRNVGELQILYKKVECNYIGKTVTFQVDKGSNA-NSFAVLVAYVNGDGEIGRIELKQAL 210
Query: 199 GSSSWKFMTREHGPSWSMANAPP--GPLQMRLVVTGGYDGKWVWADREVLPRRWRAGEVY 256
S W M++ G W + + P PL +R VT GK V A V+P W+ G +Y
Sbjct: 211 DSDKWLSMSQSWGAVWKLDVSSPLRAPLSLR--VTSLESGKTVVASN-VIPANWQPGAIY 267
Query: 257 DTGVQI 262
+ V
Sbjct: 268 KSNVNF 273
>AT1G65681.1 | chr1:24428875-24430670 FORWARD LENGTH=224
Length = 223
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 75/187 (40%), Gaps = 16/187 (8%)
Query: 85 GVGCGACYQVRCKDKKLCSNAGARVVVTDRAR-----TNRTGLVLSSXXXXXXXXXXXXX 139
G+GCG C+Q+ C CS V +TD + LS
Sbjct: 43 GIGCGTCFQILCNGHPACSRRPITVTITDECPGGPCASEPAHFDLSGKAMGALARPGQGD 102
Query: 140 SLTELAAVDVEYKRVPCEYRHRSLSVRVDERSRGPNELTISFL--YQGGQTDIVAVDVAQ 197
L + V Y+RV C YR +++ R+D G N ISF+ Y+ G D+ +++ Q
Sbjct: 103 RLRSAGVLRVYYRRVECLYRRTNIAFRMDP---GANPYYISFVVEYENGDGDLAYIEI-Q 158
Query: 198 VGSSSWKFMTREHGPSWSMANAPP--GPLQMRLVVTGGYDGKWVWADREVLPRRWRAGEV 255
+ M W +++ P GP +RL T K V A V+P W+ E
Sbjct: 159 PADGEFIPMQEMRSAVWKISSGSPLTGPFNIRL--TSAESHKVVLA-YNVIPANWKPNET 215
Query: 256 YDTGVQI 262
Y + V
Sbjct: 216 YRSVVNF 222
>AT2G45110.1 | chr2:18599575-18601237 FORWARD LENGTH=260
Length = 259
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 75/187 (40%), Gaps = 16/187 (8%)
Query: 85 GVGCGACYQVRCKDKKLCSNAGARVVVTDR-----ARTNRTGLVLSSXXXXXXXXXXXXX 139
G GCG CYQV C CS + V +TD + + LS
Sbjct: 80 GKGCGTCYQVVCIGHPACSGSPITVTITDECPGGPCASEPVHIDLSGKAMGALAKPGQAD 139
Query: 140 SLTELAAVDVEYKRVPCEYRHRSLSVRVDERSRGPNELTISFL--YQGGQTDIVAVDVAQ 197
L + V YKR C YR ++ R+D G N ISF+ Y+ G D+ V++
Sbjct: 140 QLRSAGVIRVNYKRAACLYRGTNIVFRMDA---GANPYYISFVVEYENGDGDLSNVEIQP 196
Query: 198 VGSSSWKFMTREHGPSWSM--ANAPPGPLQMRLVVTGGYDGKWVWADREVLPRRWRAGEV 255
G S+ M W + +A GP +RL T G K + A V+P W+ E
Sbjct: 197 AG-GSFISMQEMRSAVWKVNSGSALRGPFNIRL--TSGESHKVIVA-YNVIPANWKPDES 252
Query: 256 YDTGVQI 262
Y + V
Sbjct: 253 YRSIVNF 259
>AT5G39260.1 | chr5:15726479-15727416 REVERSE LENGTH=263
Length = 262
Score = 57.8 bits (138), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 76/175 (43%), Gaps = 11/175 (6%)
Query: 85 GVGCGACYQVRCK-DKKLCSNAGARVVVTDRARTNRTGLVLSSXXXXXXXXXXXXXSLTE 143
G CGACY++ C + + C + ++ TD L + + +
Sbjct: 92 GASCGACYEIMCSPNPQGCLSGSIKITATDLCPPGSAWCYLPNKHFDLSLPMFIKIAQVK 151
Query: 144 LAAVDVEYKRVPCEYRHRSLSVRVDERSRGPNELTISFLYQGGQTDIVAVDVAQVGSSSW 203
V V Y+RVPC ++ V+ + + PN LTI GG DI+AV A+ ++W
Sbjct: 152 AKMVPVRYRRVPCA---KTGGVKFEVKGN-PNILTILPYNVGGAGDIIAVS-AKGSKTAW 206
Query: 204 KFMTREHGPSWSM-ANAPPGPLQMRLVVTGGYDGKWVWADREVLPRRWRAGEVYD 257
M+R G +W+ N + +R+ + G + +V+P W G+ +D
Sbjct: 207 VVMSRYWGQNWTTNVNLTGQSVSLRVTTSDGITKDFT----DVMPASWGFGQTFD 257
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.321 0.134 0.437
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,830,083
Number of extensions: 167083
Number of successful extensions: 349
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 327
Number of HSP's successfully gapped: 10
Length of query: 279
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 182
Effective length of database: 8,447,217
Effective search space: 1537393494
Effective search space used: 1537393494
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 111 (47.4 bits)