Os03g0645000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Beta-expansin.
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Os03g0645000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Beta-expansin.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 65.61 | 0.381 | 2.86 | -0.0376 | 0.163 | -0.154 | 0.0454 | 0.0278 | 0.0643 | 3.05 | 24.9 | 309 | -- | -- |
| 65.61 | 0.377 | 2.85 | -0.029 | 0.164 | -0.153 | 0.0547 | -- | 0.0665 | 3.04 | 24.9 | 309 | -- | -- |
| 65.62 | 0.377 | 2.86 | -0.0412 | 0.161 | -0.154 | -- | 0.0412 | 0.0641 | 3.05 | 24.9 | 320 | -- | -- |
| 65.62 | 0.377 | 2.85 | -0.0303 | 0.161 | -0.153 | -- | -- | 0.0674 | 3.09 | 24.87 | 320 | -- | -- |
| 66.33 | 0.379 | 2.86 | -0.0228 | -- | -0.177 | -- | 0.00164 | 0.0664 | -- | 25.1 | 1038 | -- | -- |
| 66.76 | 0.383 | 2.84 | 0.0182 | 0.0981 | -- | 0.0296 | -- | 0.142 | 0.893 | -- | -- | -- | -- |
| 66.76 | 0.383 | 2.84 | 0.0171 | 0.0981 | -- | -- | -- | 0.141 | 0.915 | -- | -- | -- | -- |
| 66.22 | 0.379 | 2.85 | -0.0303 | -- | -0.186 | -- | -- | 0.0683 | -- | 25.6 | 1007 | -- | -- |
| 65.65 | 0.377 | 2.85 | -- | 0.158 | -0.148 | -- | -- | 0.073 | 3.05 | 24.85 | 320 | -- | -- |
| 67.36 | 0.384 | 2.84 | 0.0207 | -- | -- | -- | -- | 0.143 | -- | -- | -- | -- | -- |
| 66.77 | 0.382 | 2.84 | -- | 0.0984 | -- | -- | -- | 0.14 | 0.922 | -- | -- | -- | -- |
| 66.24 | 0.379 | 2.85 | -- | -- | -0.175 | -- | -- | 0.0856 | -- | 25.57 | 1008 | -- | -- |
| 67.37 | 0.383 | 2.84 | -- | -- | -- | -- | -- | 0.141 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 63.12 | temperature | 25.0 | 90 | > th | dose independent | rect. | 23 | 1 |
| 2 | 63.42 | temperature | 25.0 | 270 | > th | dose independent | rect. | 1 | 1 |
| 5 | 63.43 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 2 | 1 |
| 8 | 63.45 | temperature | 25.0 | 90 | > th | dose dependent | rect. | 1 | 4 |
| 12 | 63.49 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 23 | 1 |
| 13 | 63.51 | temperature | 25.0 | 90 | > th | dose independent | rect. | 1 | 4 |
| 14 | 63.52 | temperature | 25.0 | 270 | > th | dose independent | rect. | 20 | 9 |
| 31 | 63.86 | temperature | 25.0 | 270 | < th | dose independent | rect. | 17 | 14 |
| 37 | 64.00 | temperature | 25.0 | 90 | > th | dose independent | rect. | 22 | 7 |
| 43 | 64.05 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 23 | 6 |
| 51 | 64.09 | temperature | 25.0 | 270 | < th | dose independent | sin | 12 | NA |
| 69 | 64.19 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 20 | 1 |
| 73 | 64.21 | temperature | 25.0 | 270 | > th | dose independent | rect. | 20 | 4 |
| 83 | 64.26 | temperature | 25.0 | 270 | > th | dose independent | rect. | 20 | 1 |
| 97 | 64.33 | temperature | 25.0 | 270 | > th | dose independent | sin | 12 | NA |
| 122 | 64.45 | atmosphere | 1005.0 | 30 | > th | dose dependent | rect. | 2 | 3 |
| 161 | 64.62 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 20 | 7 |
| 164 | 64.63 | atmosphere | 1005.0 | 270 | > th | dose dependent | rect. | 1 | 1 |
| 166 | 64.64 | temperature | 25.0 | 30 | > th | dose independent | rect. | 4 | 1 |
| 182 | 64.68 | atmosphere | 1005.0 | 30 | > th | dose dependent | rect. | 2 | 1 |
| 183 | 64.69 | atmosphere | 1005.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 187 | 64.69 | wind | 3.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 191 | 64.69 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 2 | 1 |
| 194 | 64.69 | temperature | 25.0 | 90 | > th | dose dependent | rect. | 4 | 1 |
| 196 | 64.70 | wind | 3.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 200 | 64.70 | temperature | 10.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 203 | 64.70 | temperature | 30.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 204 | 64.70 | humidity | 50.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 207 | 64.70 | humidity | 90.0 | 10 | < th | dose independent | rect. | 4 | 1 |
| 209 | 64.70 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 210 | 64.70 | atmosphere | 1010.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 212 | 64.70 | radiation | 1.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 217 | 64.70 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 2 | 1 |
| 218 | 64.70 | temperature | 10.0 | 30 | > th | dose independent | rect. | 3 | 23 |
| 220 | 64.70 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 225 | 64.70 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 231 | 64.71 | humidity | 50.0 | 30 | > th | dose dependent | rect. | 2 | 1 |
| 246 | 64.73 | atmosphere | 1015.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 260 | 64.76 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 262 | 64.77 | wind | 9.0 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 263 | 64.77 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 266 | 64.77 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 270 | 64.77 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 279 | 64.77 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 280 | 64.77 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 301 | 64.77 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 4 | 23 |
| 304 | 64.77 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 3 | 1 |
| 321 | 64.79 | wind | 1.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 335 | 64.80 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 23 | 4 |
| 346 | 64.82 | wind | 1.0 | 30 | > th | dose dependent | rect. | 4 | 1 |
| 383 | 64.88 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 3 | 23 |
| 393 | 64.88 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 427 | 64.95 | wind | 3.0 | 30 | < th | dose dependent | rect. | 23 | 4 |
| 434 | 64.96 | wind | 1.0 | 30 | > th | dose independent | rect. | 5 | 23 |
| 435 | 64.96 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 3 | 23 |
| 450 | 64.99 | radiation | 10.0 | 4320 | > th | dose independent | rect. | 16 | 1 |
| 476 | 65.03 | temperature | 25.0 | 1440 | < th | dose independent | rect. | 1 | 1 |
| 480 | 65.04 | wind | 1.0 | 30 | > th | dose independent | rect. | 4 | 1 |
| 524 | 65.09 | wind | 3.0 | 30 | < th | dose independent | rect. | 23 | 1 |
| 535 | 65.10 | wind | 3.0 | 30 | < th | dose independent | rect. | 23 | 6 |
| 540 | 65.11 | temperature | 20.0 | 10 | < th | dose independent | rect. | 11 | 1 |
| 546 | 65.11 | humidity | 90.0 | 90 | > th | dose independent | rect. | 10 | 1 |
| 548 | 65.11 | radiation | 10.0 | 4320 | < th | dose independent | rect. | 16 | 1 |
| 549 | 65.11 | precipitation | 0.1 | 90 | > th | dose independent | rect. | 10 | 1 |
| 568 | 65.11 | temperature | 20.0 | 90 | < th | dose dependent | rect. | 10 | 1 |
| 569 | 65.11 | temperature | 20.0 | 10 | < th | dose dependent | rect. | 11 | 1 |
| 575 | 65.11 | humidity | 90.0 | 90 | > th | dose dependent | rect. | 10 | 1 |
| 577 | 65.11 | precipitation | 0.1 | 90 | > th | dose dependent | rect. | 10 | 1 |
| 622 | 65.13 | wind | 3.0 | 30 | < th | dose dependent | rect. | 23 | 1 |
| 623 | 65.13 | humidity | 80.0 | 4320 | < th | dose dependent | rect. | 5 | 1 |
| 645 | 65.15 | wind | 9.0 | 30 | < th | dose independent | rect. | 3 | 23 |
| 650 | 65.16 | temperature | 25.0 | 270 | > th | dose independent | rect. | 10 | 19 |
| 728 | 65.24 | temperature | 25.0 | 720 | > th | dose independent | rect. | 17 | 2 |
| 750 | 65.25 | humidity | 80.0 | 4320 | < th | dose independent | rect. | 5 | 1 |
| 839 | 65.30 | humidity | 80.0 | 4320 | > th | dose independent | rect. | 5 | 1 |
| 853 | 65.30 | temperature | 30.0 | 30 | < th | dose independent | rect. | 3 | 23 |
| 919 | 65.34 | atmosphere | 1005.0 | 30 | > th | dose dependent | rect. | 4 | 1 |
| 961 | 65.36 | wind | 7.0 | 90 | < th | dose dependent | rect. | 18 | 11 |