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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os10g0548600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Beta-expansin precursor.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.67 (0.0694) R2 : 0.444
β1 : 1.94 (0.252) R2dD : 0.077 R2D : 0.0362
β2 : 0.804 (0.169) R2dC : 0.0266 R2C : 0.0219
β3 : -3.75 (0.266) R2dE : 0.314 R2E : 0.0265
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -15.7 (1.12) R2dD*E : 0.291 R2D*E : 0.0763
γ1 : -0.0222 (0.151) R2dN8 : 2.02e-05 R2N8 : -0.00662
σ : 1.26
deviance : 734.78
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_____
C
peak time of C : 15.3
E
wheather : wind
threshold : 6.694
memory length : 4320
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 18
open length of G : 3.15

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
724.1 1.26 3.66 1.87 0.779 -3.66 1.97 -15.5 -0.0224 15.4 6.7 4320 18 3.08
917.27 1.41 3.66 1.86 0.777 -2.79 1.38 -- -0.00321 15.3 8.465 4318 18 3.05
734.78 1.26 3.67 1.94 0.804 -3.75 -- -15.7 -0.0222 15.3 6.694 4320 18 3.15
920.91 1.41 3.66 1.89 0.749 -2.89 -- -- 0.0255 15 8.458 4319 18.1 3.04
767.83 1.29 3.65 1.9 -- -3.76 -- -15.7 -0.0204 -- 6.699 4317 18 3.13
1199.59 1.62 3.58 1.43 0.839 -- 1.81 -- -0.255 15 -- -- -- --
1210.66 1.63 3.57 1.47 0.847 -- -- -- -0.244 15 -- -- -- --
955.33 1.44 3.66 1.91 -- -2.87 -- -- 0.0464 -- 8.464 4318 18.1 2.99
959.34 1.44 3.66 -- 0.731 -2.87 -- -- 0.0435 15 8.454 4319 18.1 2.99
1251.78 1.65 3.57 1.44 -- -- -- -- -0.266 -- -- -- -- --
1267.81 1.67 3.61 -- 0.818 -- -- -- -0.408 15 -- -- -- --
910.03 1.41 3.66 -- -- -3.45 -- -- -0.176 -- 8.8 4318 18.4 2.53
1306.21 1.69 3.61 -- -- -- -- -- -0.425 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 750.61 wind 7 4320 < th dose independent rect. 18 3
2 754.93 wind 7 4320 < th dose independent rect. 18 5
5 765.66 wind 5 4320 > th dose dependent rect. 18 4
6 766.60 wind 7 4320 > th dose independent rect. 18 3
14 778.39 wind 5 1440 > th dose independent rect. 6 17
19 780.41 wind 5 1440 > th dose independent rect. 3 20
54 788.10 wind 5 1440 < th dose independent rect. 7 16
61 788.92 humidity 80 1440 < th dose independent rect. 22 1
67 790.64 wind 5 1440 < th dose independent rect. 3 20
92 794.78 wind 5 1440 > th dose independent sin 23 NA
131 797.78 wind 9 4320 > th dose independent rect. 20 6
179 800.61 wind 9 4320 < th dose independent rect. 20 7
195 802.60 wind 5 1440 < th dose independent sin 23 NA
275 814.07 humidity 90 1440 < th dose dependent rect. 23 8
290 815.56 wind 5 1440 > th dose dependent rect. 7 16
310 817.67 wind 5 1440 > th dose dependent rect. 3 20
324 819.26 wind 5 1440 > th dose independent rect. 11 23
336 820.12 wind 5 1440 > th dose independent rect. 21 23
361 821.61 wind 5 1440 > th dose independent no NA NA
362 821.65 wind 5 1440 > th dose dependent rect. 15 19
387 824.19 humidity 90 1440 < th dose dependent rect. 3 1
400 825.05 wind 5 1440 > th dose dependent rect. 12 22
403 825.38 atmosphere 995 14400 > th dose independent rect. 13 2
411 825.62 atmosphere 995 14400 > th dose independent rect. 13 5
414 825.69 atmosphere 995 14400 > th dose independent rect. 13 7
417 825.83 atmosphere 995 14400 > th dose independent rect. 7 13
422 825.91 atmosphere 995 14400 > th dose independent rect. 7 11
428 826.03 atmosphere 995 14400 > th dose independent rect. 10 10
430 826.03 wind 5 1440 > th dose dependent rect. 15 22
431 826.07 atmosphere 995 14400 < th dose independent rect. 15 2
433 826.11 atmosphere 995 14400 > th dose independent rect. 10 8
455 826.41 atmosphere 995 14400 < th dose independent rect. 14 4
515 826.98 atmosphere 995 14400 < th dose dependent rect. 15 4
569 827.79 wind 5 1440 > th dose independent rect. 15 23
585 828.19 radiation 1 14400 < th dose dependent rect. 23 3
621 829.42 atmosphere 1005 14400 > th dose independent rect. 7 1
637 830.64 wind 5 1440 < th dose independent rect. 20 23
639 830.71 atmosphere 1005 14400 < th dose independent rect. 6 1
640 830.72 humidity 80 1440 > th dose independent rect. 22 1
671 831.97 wind 5 1440 < th dose independent rect. 11 23
677 832.36 humidity 90 1440 < th dose dependent rect. 23 5
703 833.08 humidity 70 1440 > th dose dependent rect. 24 7
725 833.61 wind 5 1440 < th dose independent no NA NA
726 833.63 wind 5 1440 > th dose dependent sin 20 NA
764 834.99 wind 5 1440 > th dose independent rect. 17 23
790 835.83 wind 5 1440 > th dose dependent rect. 11 12
793 835.87 wind 5 1440 > th dose dependent no NA NA
797 835.91 wind 5 1440 > th dose dependent rect. 22 23
819 836.56 atmosphere 995 14400 < th dose independent rect. 18 1
822 836.56 atmosphere 995 14400 < th dose dependent rect. 18 1
889 838.98 radiation 1 14400 < th dose dependent rect. 20 6
915 839.76 atmosphere 1010 14400 < th dose dependent rect. 2 3
925 839.92 atmosphere 1010 14400 < th dose dependent rect. 2 7
929 840.05 atmosphere 1010 14400 < th dose dependent rect. 7 2
980 841.46 atmosphere 995 14400 > th dose independent rect. 20 20