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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0102700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Beta-expansin precursor.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.88 (0.098) R2 : 0.665
β1 : -8.94 (0.542) R2dD : 0.79 R2D : 0.00396
β2 : 4 (0.195) R2dC : 0.313 R2C : 0.164
β3 : 1.89 (0.265) R2dE : 0.0536 R2E : -0.203
β4 : -5.94 (0.849) R2dD*C : 0.0363 R2D*C : -0.038
β5 : -9.53 (1.43) R2dD*E : 0.123 R2D*E : -0.429
γ1 : -2.72 (0.223) R2dN8 : 0.279 R2N8 : -0.0946
σ : 1.43
deviance : 925.17
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_____
C
peak time of C : 7.66
E
wheather : temperature
threshold : 25.9
memory length : 3160
response mode : > th
dose dependency : dose independent
G
type of G : sin
peak or start time of G : 17.5
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
925.17 1.43 5.88 -8.94 4 1.89 -5.94 -9.53 -2.72 7.66 25.9 3160 17.5 --
1007.07 1.48 5.67 -8.16 3.81 2.63 -5.52 -- -2.53 7.67 21.7 25673 15.8 --
1009.33 1.48 5.85 -9 3.99 1.83 -- -9.06 -2.62 7.63 26.5 3020 17.2 --
1061.67 1.52 5.57 -8.14 3.84 2.89 -- -- -2.21 7.52 15.5 47520 12.2 --
1790.96 1.97 6.2 -8.5 -- 3.89 -- -11.1 -3.18 -- 27.11 1250 10.5 --
1073.47 1.54 5.39 -5.33 3.83 -- -5.51 -- -1.44 7.62 -- -- -- --
1158.06 1.59 5.39 -5.47 3.83 -- -- -- -1.44 7.5 -- -- -- --
1154.89 1.58 5.53 -5.56 -- 3.9 -- -- -1.44 -- 14.4 786 5.14 --
1906.34 2.04 5.36 -- 2.75 -5.61 -- -- -0.787 15.4 15.5 47520 12.2 --
1944.16 2.06 5.48 -5.41 -- -- -- -- -1.38 -- -- -- -- --
1945.9 2.06 5.25 -- 3.79 -- -- -- -0.827 7.59 -- -- -- --
1945.98 2.05 5.36 -- -- 3.79 -- -- -0.842 -- 12.79 819 5.26 --
2715.96 2.43 5.35 -- -- -- -- -- -0.775 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 890.05 wind 5 43200 < th dose independent rect. 13 3
2 890.57 wind 5 43200 > th dose independent rect. 13 3
6 893.66 humidity 90 43200 > th dose independent rect. 5 1
19 897.90 humidity 90 14400 < th dose independent rect. 2 1
25 899.90 wind 3 43200 > th dose dependent rect. 13 3
30 901.00 wind 5 43200 < th dose independent rect. 12 9
51 902.92 humidity 90 43200 < th dose independent rect. 22 1
58 903.80 humidity 80 43200 > th dose dependent rect. 4 11
62 904.28 humidity 80 43200 > th dose dependent rect. 3 13
67 904.72 wind 9 43200 < th dose dependent rect. 13 1
72 905.03 humidity 90 43200 > th dose dependent rect. 5 2
81 905.64 humidity 90 43200 > th dose independent rect. 4 6
82 905.64 humidity 80 43200 > th dose dependent sin 2 NA
84 905.78 humidity 90 43200 < th dose independent rect. 2 13
95 906.50 humidity 90 43200 < th dose independent sin 4 NA
117 907.66 humidity 90 43200 > th dose independent rect. 2 13
121 907.75 humidity 90 14400 < th dose independent rect. 23 6
128 908.00 humidity 90 43200 > th dose dependent rect. 4 6
130 908.01 humidity 90 43200 < th dose independent rect. 3 9
133 908.14 humidity 90 43200 > th dose independent sin 4 NA
160 909.15 humidity 90 43200 > th dose independent rect. 22 1
199 910.22 humidity 90 43200 < th dose independent rect. 1 22
276 912.27 wind 5 43200 < th dose independent sin 19 NA
294 912.72 humidity 90 43200 > th dose independent rect. 2 21
317 913.17 humidity 90 43200 < th dose independent rect. 22 22
340 913.58 humidity 90 43200 < th dose independent rect. 15 23
346 913.65 humidity 90 43200 < th dose independent rect. 19 23
357 913.83 humidity 90 43200 < th dose independent no NA NA
404 914.44 humidity 90 43200 > th dose independent rect. 22 20
465 915.22 humidity 90 43200 < th dose independent rect. 11 23
491 915.57 humidity 90 43200 > th dose independent rect. 22 16
495 915.61 humidity 90 43200 < th dose independent rect. 9 23
505 915.72 wind 5 43200 > th dose independent sin 19 NA
510 915.76 humidity 90 43200 > th dose independent rect. 15 23
516 915.79 humidity 90 43200 > th dose independent rect. 17 23
537 915.97 humidity 90 43200 > th dose independent no NA NA
577 916.42 humidity 90 14400 > th dose independent rect. 1 2
634 917.06 humidity 90 43200 > th dose independent rect. 11 23
649 917.30 humidity 90 43200 > th dose independent rect. 8 23
666 917.58 humidity 90 43200 < th dose independent rect. 22 16
719 918.41 humidity 90 43200 < th dose independent rect. 5 3
763 919.01 wind 3 43200 > th dose dependent sin 20 NA
770 919.09 humidity 90 43200 > th dose dependent rect. 15 23
774 919.13 humidity 90 43200 > th dose dependent no NA NA
784 919.29 humidity 90 43200 > th dose dependent rect. 19 23
831 919.90 humidity 80 43200 > th dose dependent sin 20 NA
852 920.09 humidity 90 43200 > th dose dependent rect. 11 23
864 920.22 humidity 90 43200 > th dose dependent rect. 9 23
873 920.33 humidity 80 43200 > th dose dependent rect. 13 1
904 920.84 humidity 90 14400 > th dose independent rect. 22 7
916 920.93 humidity 90 43200 < th dose independent sin 18 NA