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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0552200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Beta-expansin 5.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.91 (0.0107) R2 : 0.00261
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0247 (0.0226) R2dN8 : 0.00337 R2N8 : 0.00261
σ : 0.202
deviance : 18.8
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
17.59 0.197 2.91 0.00849 0.0282 0.118 -0.119 0.0463 -0.0235 2.98 13.62 10 -- --
17.6 0.195 2.91 0.0105 0.027 0.119 -0.156 -- -0.0234 2.56 13.62 9 -- --
17.63 0.196 2.91 0.00866 0.0297 0.119 -- 0.105 -0.0225 2.95 13.3 9 -- --
17.64 0.196 2.91 0.00986 0.0316 0.128 -- -- -0.0199 3.56 18.01 8 -- --
17.66 0.196 2.91 0.0107 -- 0.106 -- 0.101 -0.0221 -- 13.53 9 -- --
18.08 0.199 2.91 0.0161 0.0991 -- 0.155 -- -0.0221 11.5 -- -- -- --
18.18 0.2 2.91 0.0222 0.0987 -- -- -- -0.0216 11.3 -- -- -- --
17.67 0.196 2.91 0.0182 -- 0.117 -- -- -0.0156 -- 17.99 8 -- --
17.64 0.196 2.91 -- 0.0281 0.123 -- -- -0.021 4.69 18.02 8 -- --
18.79 0.203 2.91 0.0197 -- -- -- -- -0.0225 -- -- -- -- --
18.19 0.2 2.91 -- 0.0985 -- -- -- -0.0241 11.3 -- -- -- --
17.67 0.196 2.91 -- -- 0.116 -- -- -0.0206 -- 18 8 -- --
18.8 0.202 2.91 -- -- -- -- -- -0.0247 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 15.54 precipitation 0.1 270 > th dose independent rect. 8 1
2 15.54 precipitation 0.1 270 > th dose dependent rect. 8 1
3 15.74 radiation 1.0 90 < th dose independent rect. 8 3
4 15.74 radiation 1.0 90 < th dose dependent rect. 8 3
7 16.00 humidity 80.0 10 > th dose independent rect. 12 1
15 16.68 humidity 90.0 270 > th dose dependent rect. 8 1
19 16.75 wind 3.0 10 < th dose dependent rect. 11 1
29 16.84 wind 1.0 10 < th dose independent rect. 11 1
34 16.89 radiation 30.0 30 < th dose independent rect. 12 1
38 16.95 humidity 60.0 10 > th dose dependent rect. 11 2
55 17.08 precipitation 0.1 720 < th dose independent rect. 3 8
57 17.08 wind 3.0 10 < th dose dependent rect. 8 5
58 17.08 precipitation 0.1 720 < th dose dependent rect. 3 8
71 17.11 temperature 25.0 270 < th dose independent rect. 9 1
75 17.11 humidity 60.0 270 > th dose dependent rect. 8 4
83 17.13 humidity 60.0 270 > th dose dependent rect. 9 1
123 17.22 wind 5.0 720 > th dose dependent rect. 3 1
133 17.23 radiation 40.0 30 < th dose independent rect. 11 15
141 17.25 humidity 70.0 270 > th dose independent rect. 8 4
143 17.26 wind 1.0 90 < th dose dependent rect. 10 1
145 17.27 wind 5.0 720 > th dose independent rect. 3 1
153 17.28 humidity 70.0 270 > th dose independent rect. 9 2
193 17.32 precipitation 0.1 720 < th dose independent rect. 23 16
201 17.32 wind 3.0 10 < th dose dependent rect. 6 7
202 17.32 precipitation 0.1 720 < th dose dependent rect. 23 16
229 17.35 radiation 40.0 90 < th dose independent rect. 21 16
236 17.35 precipitation 0.1 720 > th dose dependent rect. 3 5
249 17.36 precipitation 0.1 720 > th dose dependent rect. 3 2
265 17.37 atmosphere 1000.0 90 > th dose independent rect. 11 2
270 17.37 precipitation 0.1 720 > th dose independent rect. 3 5
279 17.37 radiation 40.0 30 < th dose dependent rect. 11 1
297 17.38 precipitation 0.1 720 > th dose independent rect. 3 2
307 17.38 humidity 70.0 270 > th dose independent rect. 19 17
325 17.39 temperature 30.0 30 < th dose independent rect. 11 2
334 17.39 temperature 25.0 720 < th dose independent rect. 1 8
350 17.40 humidity 80.0 1440 < th dose independent rect. 12 1
352 17.40 humidity 60.0 10 > th dose independent rect. 11 2
354 17.40 radiation 10.0 90 > th dose independent rect. 11 2
376 17.40 radiation 20.0 10 < th dose dependent rect. 23 23
392 17.41 atmosphere 995.0 30 > th dose dependent rect. 11 2
426 17.42 radiation 30.0 10 < th dose independent rect. 3 8
456 17.43 wind 1.0 90 > th dose independent rect. 11 2
457 17.43 temperature 20.0 90 > th dose independent rect. 11 2
484 17.44 humidity 80.0 1440 > th dose independent rect. 12 1
486 17.44 atmosphere 1000.0 270 > th dose independent rect. 8 4
492 17.44 temperature 30.0 270 < th dose dependent rect. 8 1
524 17.45 temperature 30.0 90 < th dose independent rect. 21 16
527 17.45 atmosphere 995.0 90 > th dose independent rect. 13 22
547 17.46 wind 3.0 270 < th dose independent rect. 9 3
550 17.46 radiation 10.0 270 > th dose independent rect. 9 3
556 17.46 atmosphere 995.0 90 > th dose independent rect. 13 8
557 17.46 precipitation 0.1 30 < th dose independent rect. 3 8
558 17.46 temperature 10.0 1440 > th dose independent rect. 3 9
561 17.46 atmosphere 995.0 1440 > th dose independent rect. 3 9
565 17.46 temperature 10.0 1440 > th dose independent rect. 12 15
568 17.46 atmosphere 1015.0 90 < th dose independent rect. 21 16
588 17.46 precipitation 0.1 30 < th dose dependent rect. 3 8
592 17.46 humidity 90.0 1440 > th dose dependent rect. 9 12
599 17.47 humidity 90.0 90 < th dose independent rect. 11 2
608 17.47 wind 9.0 10 < th dose independent rect. 3 8
610 17.47 temperature 10.0 10 > th dose independent rect. 3 8
614 17.47 humidity 50.0 10 > th dose independent rect. 3 8
617 17.47 atmosphere 995.0 10 > th dose independent rect. 3 8
619 17.47 atmosphere 1015.0 10 < th dose independent rect. 3 8
621 17.47 radiation 1.0 720 > th dose independent rect. 7 8
633 17.47 wind 9.0 30 < th dose independent rect. 11 15
634 17.47 temperature 10.0 30 > th dose independent rect. 11 15
636 17.47 atmosphere 1015.0 30 < th dose independent rect. 11 15
650 17.47 wind 9.0 90 < th dose independent rect. 13 22
656 17.47 temperature 25.0 10 > th dose dependent rect. 22 2
668 17.47 wind 9.0 30 < th dose dependent rect. 3 8
677 17.48 wind 9.0 90 < th dose independent rect. 11 2
678 17.48 temperature 10.0 90 > th dose independent rect. 11 2
680 17.48 temperature 25.0 10 > th dose independent rect. 22 2
684 17.48 atmosphere 1015.0 90 < th dose independent rect. 11 2
686 17.48 precipitation 0.1 90 < th dose independent rect. 11 2
724 17.48 atmosphere 995.0 270 > th dose independent rect. 13 18
726 17.48 radiation 1.0 270 < th dose independent rect. 7 19
727 17.48 radiation 1.0 720 > th dose independent rect. 18 20
729 17.48 temperature 10.0 90 > th dose independent rect. 13 22
734 17.48 humidity 80.0 1440 > th dose dependent rect. 12 2
735 17.48 precipitation 0.1 90 < th dose dependent rect. 11 2
738 17.48 temperature 10.0 270 > th dose dependent rect. 18 8
739 17.48 humidity 90.0 1440 > th dose dependent rect. 13 8
748 17.49 wind 1.0 90 < th dose independent rect. 10 1
756 17.49 precipitation 0.1 1440 < th dose independent rect. 14 2
765 17.49 wind 7.0 270 < th dose independent rect. 18 8
769 17.49 temperature 10.0 90 > th dose independent rect. 13 8
772 17.49 atmosphere 1010.0 90 < th dose independent rect. 13 8
776 17.49 precipitation 0.1 720 > th dose independent rect. 3 13
778 17.49 precipitation 0.1 30 < th dose independent rect. 11 15
782 17.49 temperature 10.0 90 > th dose independent rect. 21 16
783 17.49 atmosphere 995.0 270 > th dose independent rect. 2 16
784 17.49 atmosphere 995.0 90 > th dose independent rect. 21 16
788 17.49 humidity 70.0 270 > th dose independent rect. 8 18
789 17.49 atmosphere 995.0 270 > th dose independent rect. 12 20
790 17.49 radiation 10.0 30 < th dose independent rect. 23 23
796 17.49 precipitation 0.1 1440 < th dose dependent rect. 14 2
799 17.49 wind 9.0 270 < th dose dependent rect. 8 4
807 17.49 humidity 90.0 1440 > th dose dependent rect. 15 6
808 17.49 temperature 10.0 270 > th dose dependent rect. 1 7
815 17.49 precipitation 0.1 30 < th dose dependent rect. 11 15
816 17.49 temperature 10.0 270 > th dose dependent rect. 2 16
819 17.49 humidity 50.0 270 > th dose dependent rect. 19 17
820 17.50 precipitation 0.1 720 < th dose independent sin 5 NA
829 17.50 radiation 10.0 10 > th dose independent rect. 11 3
832 17.50 precipitation 0.1 720 > th dose independent rect. 7 4
837 17.50 wind 9.0 90 < th dose independent rect. 13 8
838 17.50 temperature 30.0 30 < th dose independent rect. 3 8
851 17.50 temperature 15.0 270 > th dose independent rect. 2 16
854 17.50 atmosphere 1015.0 270 < th dose independent rect. 19 17
860 17.50 humidity 90.0 1440 > th dose dependent sin 20 NA
862 17.50 precipitation 0.1 720 > th dose dependent sin 6 NA
863 17.50 precipitation 0.1 720 < th dose dependent sin 5 NA
865 17.50 radiation 1.0 14400 < th dose dependent rect. 23 1
867 17.50 wind 9.0 90 < th dose dependent rect. 11 2
874 17.50 precipitation 0.1 720 > th dose dependent rect. 7 4
881 17.50 temperature 10.0 10 > th dose dependent rect. 3 8
887 17.50 humidity 50.0 10 > th dose dependent rect. 11 16
889 17.50 humidity 60.0 270 > th dose dependent rect. 8 18
894 17.51 precipitation 0.1 1440 > th dose independent rect. 14 2
902 17.51 wind 9.0 270 < th dose independent rect. 8 4
903 17.51 temperature 10.0 270 > th dose independent rect. 8 4
908 17.51 atmosphere 1015.0 270 < th dose independent rect. 8 4
909 17.51 radiation 20.0 30 < th dose independent rect. 8 4
911 17.51 precipitation 0.1 270 < th dose independent rect. 8 4
914 17.51 wind 9.0 270 < th dose independent rect. 7 6
915 17.51 temperature 10.0 270 > th dose independent rect. 7 6
918 17.51 atmosphere 1015.0 270 < th dose independent rect. 7 6
921 17.51 precipitation 0.1 270 < th dose independent rect. 7 6
931 17.51 atmosphere 1015.0 270 < th dose independent rect. 18 8
934 17.51 precipitation 0.1 270 < th dose independent rect. 18 8
944 17.51 wind 9.0 270 < th dose independent rect. 21 15
948 17.51 atmosphere 1015.0 10 < th dose independent rect. 22 15
956 17.51 precipitation 0.1 90 < th dose independent rect. 21 16
957 17.51 humidity 70.0 90 > th dose independent rect. 10 17
959 17.51 wind 9.0 270 < th dose independent rect. 13 18
960 17.51 temperature 10.0 270 > th dose independent rect. 13 18
964 17.51 temperature 10.0 270 > th dose independent rect. 12 20
968 17.51 atmosphere 1000.0 30 > th dose independent rect. 23 23
980 17.51 precipitation 0.1 1440 > th dose dependent rect. 14 2
986 17.51 precipitation 0.1 270 < th dose dependent rect. 8 4
989 17.51 precipitation 0.1 270 < th dose dependent rect. 7 6
995 17.51 radiation 1.0 270 < th dose dependent rect. 18 8
997 17.51 precipitation 0.1 270 < th dose dependent rect. 18 8