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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0530100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Beta-expansin 1 precursor (AtEXPB1) (At-EXPB1) (Ath-ExpBeta-1.5).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.19 (0.0422) R2 : 0.168
β1 : -1.3 (0.154) R2dD : 0.134 R2D : 0.0763
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.552 (0.09) R2dN8 : 0.0919 R2N8 : 0.034
σ : 0.791
deviance : 286.84
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
263.95 0.763 4.21 -1.49 0.466 0.69 0.696 -4.4 -0.52 5.37 999.2 7590 -- --
267.95 0.762 4.17 -1.3 0.429 1.05 0.634 -- -0.516 5.38 996.2 2877 -- --
265.15 0.758 4.21 -1.49 0.47 0.692 -- -4.39 -0.521 5.35 999.1 7590 -- --
267.61 0.762 4.17 -1.27 0.44 0.897 -- -- -0.542 5.18 993.3 12836 -- --
276.65 0.775 4.22 -1.46 -- 0.672 -- -4.33 -0.513 -- 999.1 7605 -- --
274.44 0.777 4.18 -1.32 0.457 -- 0.729 -- -0.56 5.38 -- -- -- --
275.76 0.778 4.18 -1.32 0.461 -- -- -- -0.563 5.38 -- -- -- --
278.76 0.778 4.18 -1.2 -- 1.01 -- -- -0.516 -- 993.3 12838 -- --
296.39 0.802 4.14 -- 0.439 0.961 -- -- -0.343 5.11 991.5 17494 -- --
286.84 0.791 4.19 -1.3 -- -- -- -- -0.552 -- -- -- -- --
321.38 0.839 4.15 -- 0.439 -- -- -- -0.417 5.5 -- -- -- --
307.02 0.816 4.13 -- -- 0.903 -- -- -0.324 -- 992 17560 -- --
331.42 0.85 4.15 -- -- -- -- -- -0.408 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 261.23 radiation 1 14400 > th dose independent rect. 9 6
2 261.33 radiation 1 14400 < th dose independent rect. 9 6
3 261.39 radiation 1 14400 > th dose independent rect. 12 1
4 261.43 radiation 1 14400 < th dose independent rect. 12 1
5 261.54 radiation 1 14400 > th dose independent rect. 9 4
7 261.80 radiation 1 14400 < th dose independent rect. 9 4
11 261.98 humidity 90 14400 < th dose independent rect. 5 1
14 262.26 radiation 1 14400 < th dose dependent rect. 9 7
20 262.54 radiation 1 14400 < th dose dependent rect. 14 2
26 262.82 radiation 40 43200 > th dose independent rect. 7 1
42 262.82 radiation 40 43200 > th dose dependent rect. 7 1
71 263.09 humidity 80 43200 < th dose independent rect. 22 21
75 263.19 radiation 1 14400 > th dose independent rect. 14 1
76 263.19 radiation 1 14400 < th dose independent rect. 14 1
78 263.20 humidity 80 43200 < th dose independent rect. 24 18
79 263.22 radiation 1 14400 < th dose dependent rect. 12 1
85 263.24 humidity 90 43200 < th dose independent rect. 14 1
89 263.30 humidity 80 43200 > th dose independent rect. 22 21
102 263.45 humidity 80 43200 > th dose independent rect. 10 18
106 263.47 humidity 80 43200 > th dose independent rect. 11 16
112 263.58 atmosphere 1015 43200 > th dose dependent rect. 20 1
121 263.68 humidity 80 43200 > th dose independent rect. 24 18
124 263.74 humidity 80 43200 < th dose independent rect. 10 19
126 263.75 humidity 80 43200 < th dose independent rect. 11 16
128 263.76 radiation 1 270 < th dose independent rect. 8 1
131 263.76 radiation 1 270 < th dose dependent rect. 8 1
139 263.81 humidity 80 90 < th dose independent rect. 23 8
141 263.82 atmosphere 1015 43200 > th dose dependent rect. 17 5
144 263.84 wind 3 4320 > th dose dependent rect. 22 1
151 263.86 atmosphere 1015 43200 > th dose dependent rect. 14 9
161 263.92 humidity 80 43200 > th dose independent rect. 1 16
176 264.07 wind 5 4320 > th dose independent rect. 21 2
182 264.09 wind 5 4320 < th dose independent rect. 21 2
195 264.19 humidity 80 43200 > th dose independent rect. 2 14
208 264.27 atmosphere 995 14400 > th dose independent rect. 7 2
221 264.38 humidity 80 43200 > th dose independent rect. 3 21
226 264.42 atmosphere 1000 10 < th dose independent rect. 7 1
234 264.42 atmosphere 1000 10 < th dose dependent rect. 7 1
264 264.49 atmosphere 1015 43200 < th dose independent rect. 18 2
268 264.51 humidity 90 14400 < th dose independent rect. 3 4
270 264.52 humidity 90 43200 > th dose independent rect. 14 1
271 264.53 humidity 80 43200 > th dose independent sin 17 NA
277 264.54 atmosphere 1015 43200 > th dose independent rect. 19 1
283 264.56 humidity 80 43200 < th dose independent sin 3 NA
289 264.57 atmosphere 1015 43200 > th dose independent rect. 15 6
298 264.60 humidity 70 43200 > th dose dependent rect. 12 17
322 264.73 humidity 80 43200 > th dose independent sin 3 NA
349 264.80 atmosphere 995 4320 > th dose independent rect. 22 16
351 264.80 humidity 80 43200 < th dose independent rect. 3 21
353 264.80 atmosphere 1015 43200 > th dose dependent rect. 13 3
370 264.84 humidity 70 43200 > th dose dependent rect. 20 21
376 264.86 atmosphere 995 14400 > th dose independent rect. 4 10
378 264.86 humidity 80 43200 < th dose independent rect. 1 22
380 264.87 atmosphere 995 4320 > th dose independent rect. 20 18
394 264.90 radiation 30 90 > th dose independent rect. 7 1
421 264.93 radiation 40 1440 < th dose independent rect. 16 1
425 264.94 humidity 80 43200 < th dose independent sin 17 NA
428 264.94 atmosphere 995 14400 < th dose dependent rect. 4 11
443 264.99 atmosphere 995 14400 < th dose dependent rect. 2 14
448 265.01 atmosphere 995 14400 > th dose independent rect. 16 6
450 265.01 atmosphere 995 14400 < th dose independent rect. 24 15
464 265.02 radiation 30 43200 > th dose dependent rect. 16 1
513 265.07 atmosphere 995 14400 < th dose dependent sin 3 NA
522 265.08 humidity 70 43200 > th dose dependent sin 16 NA
528 265.09 atmosphere 995 14400 > th dose independent sin 6 NA
529 265.09 atmosphere 995 14400 > th dose independent rect. 7 5
531 265.09 atmosphere 995 14400 < th dose independent rect. 17 5
539 265.10 atmosphere 995 14400 < th dose independent sin 5 NA
548 265.11 humidity 80 10 < th dose independent rect. 23 8
577 265.12 atmosphere 995 14400 < th dose dependent rect. 14 13
599 265.13 atmosphere 995 14400 < th dose dependent no NA NA
701 265.14 atmosphere 995 14400 < th dose dependent rect. 17 5
714 265.15 atmosphere 995 14400 > th dose independent rect. 7 18
717 265.15 atmosphere 995 14400 < th dose dependent sin 16 NA
738 265.16 atmosphere 995 14400 < th dose independent rect. 16 7
739 265.16 atmosphere 995 14400 > th dose independent rect. 15 10
746 265.16 atmosphere 995 14400 > th dose independent rect. 3 19
772 265.17 atmosphere 995 14400 < th dose independent rect. 15 9
813 265.18 atmosphere 995 14400 > th dose independent rect. 5 20
819 265.18 atmosphere 995 14400 > th dose independent rect. 24 21
830 265.18 atmosphere 995 14400 < th dose dependent rect. 15 8
847 265.19 atmosphere 995 14400 > th dose independent sin 17 NA
848 265.19 atmosphere 995 14400 < th dose independent sin 17 NA
946 265.20 atmosphere 995 14400 > th dose independent no NA NA
948 265.20 atmosphere 995 14400 < th dose independent no NA NA
991 265.20 atmosphere 995 14400 > th dose independent rect. 14 19