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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0106800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Beta-expansin precursor (Beta-expansin OsEXPB10).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.95 (0.0411) R2 : 0.000355
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0348 (0.0864) R2dN8 : 0.000458 R2N8 : 0.000355
σ : 0.773
deviance : 274.4
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
251.37 0.745 2.85 0.346 0.245 1.03 -1.53 -4.21 -0.0891 3.84 50 4302 -- --
261.62 0.753 2.97 0.0348 0.228 0.462 -1.23 -- -0.0152 3.51 66 11621 -- --
257.89 0.748 2.84 0.395 0.246 1.14 -- -4.4 -0.102 3.23 50.2 4324 -- --
265.02 0.758 2.92 0.12 0.181 0.583 -- -- 0.105 2.32 79.46 11755 -- --
261.28 0.753 2.85 0.356 -- 0.948 -- -3.95 -0.0749 -- 50.43 4311 -- --
265.18 0.763 2.95 0.133 0.209 -- -1.51 -- -0.0309 4.14 -- -- -- --
271.1 0.771 2.94 0.149 0.212 -- -- -- -0.0225 2.46 -- -- -- --
267.12 0.761 2.91 0.147 -- 0.569 -- -- 0.117 -- 79.39 11766 -- --
265.5 0.759 2.92 -- 0.192 0.576 -- -- 0.101 2.21 79 11716 -- --
273.75 0.773 2.94 0.158 -- -- -- -- -0.0172 -- -- -- -- --
271.68 0.771 2.95 -- 0.215 -- -- -- -0.0391 2.47 -- -- -- --
267.71 0.762 2.92 -- -- 0.573 -- -- 0.0993 -- 79 11766 -- --
274.4 0.773 2.95 -- -- -- -- -- -0.0348 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 248.48 humidity 80 30 < th dose dependent rect. 21 4
7 249.03 humidity 80 10 < th dose independent rect. 22 2
12 249.30 wind 5 1440 < th dose independent rect. 20 13
14 249.43 humidity 80 90 < th dose dependent rect. 22 1
15 249.45 wind 5 1440 > th dose independent rect. 20 13
17 249.48 wind 5 1440 > th dose dependent rect. 22 2
19 249.60 wind 7 1440 < th dose independent rect. 22 11
25 249.80 humidity 80 720 < th dose independent rect. 24 1
27 249.80 humidity 80 720 < th dose dependent rect. 24 1
30 249.81 wind 5 1440 > th dose dependent rect. 21 12
31 249.82 humidity 50 14400 < th dose dependent rect. 11 1
34 249.92 wind 1 270 < th dose independent rect. 16 1
35 249.92 wind 1 270 < th dose dependent rect. 16 1
37 249.97 wind 5 1440 < th dose independent rect. 20 9
53 250.12 wind 5 1440 < th dose independent rect. 20 5
58 250.19 humidity 80 10 < th dose independent rect. 24 4
63 250.20 temperature 20 1440 > th dose independent rect. 4 15
64 250.20 humidity 80 10 < th dose dependent rect. 24 4
68 250.21 wind 1 43200 < th dose dependent rect. 23 1
81 250.31 wind 5 1440 > th dose independent rect. 20 8
85 250.36 radiation 10 14400 < th dose independent rect. 17 7
88 250.38 radiation 10 14400 < th dose independent rect. 17 3
93 250.39 radiation 10 14400 < th dose independent rect. 17 10
101 250.42 temperature 20 1440 < th dose independent rect. 4 15
104 250.47 wind 5 1440 > th dose independent sin 10 NA
107 250.50 wind 5 1440 > th dose independent rect. 21 4
121 250.60 temperature 20 1440 < th dose independent rect. 4 13
126 250.65 wind 5 1440 < th dose independent sin 10 NA
131 250.65 humidity 60 14400 < th dose dependent rect. 8 1
136 250.66 temperature 20 1440 > th dose independent rect. 4 13
152 250.84 wind 5 1440 > th dose independent rect. 22 2
155 250.84 humidity 80 4320 > th dose dependent rect. 10 2
166 250.94 humidity 50 4320 > th dose independent sin 2 NA
169 250.95 humidity 60 14400 < th dose dependent rect. 18 1
172 250.97 humidity 60 14400 < th dose dependent rect. 18 14
178 251.00 humidity 50 4320 > th dose independent rect. 3 13
181 251.01 humidity 50 4320 > th dose independent rect. 6 10
185 251.01 humidity 50 4320 > th dose independent rect. 19 21
188 251.02 humidity 60 14400 < th dose dependent rect. 18 3
198 251.03 wind 1 43200 > th dose independent rect. 22 1
205 251.04 humidity 50 4320 > th dose independent rect. 10 6
207 251.04 humidity 50 4320 > th dose independent rect. 21 19
215 251.06 humidity 50 4320 > th dose independent rect. 23 17
221 251.07 temperature 25 1440 < th dose dependent rect. 13 3
239 251.12 wind 5 1440 < th dose independent rect. 22 2
254 251.19 temperature 20 1440 > th dose independent sin 0 NA
267 251.29 wind 5 720 < th dose independent rect. 18 3
271 251.32 humidity 80 4320 < th dose independent rect. 10 1
274 251.33 humidity 80 4320 > th dose independent rect. 9 3
275 251.33 humidity 50 4320 > th dose independent rect. 3 21
276 251.33 humidity 50 4320 > th dose independent rect. 10 21
278 251.34 humidity 50 4320 > th dose independent rect. 6 18
282 251.36 humidity 50 4320 > th dose independent rect. 10 14
290 251.37 humidity 50 4320 > th dose independent rect. 6 16
291 251.37 humidity 50 4320 > th dose independent rect. 3 17
306 251.38 humidity 50 4320 > th dose independent rect. 6 14
323 251.39 humidity 50 4320 > th dose independent rect. 10 12
332 251.39 humidity 50 4320 > th dose independent rect. 16 23
335 251.39 humidity 70 4320 > th dose dependent rect. 8 4
336 251.40 humidity 50 4320 > th dose independent no NA NA
338 251.40 humidity 50 4320 > th dose independent rect. 10 10
349 251.40 humidity 50 4320 > th dose independent rect. 6 23
350 251.40 humidity 50 4320 > th dose independent rect. 21 23
353 251.41 temperature 20 1440 < th dose independent sin 0 NA
354 251.41 wind 7 43200 < th dose independent rect. 8 1
370 251.42 humidity 50 4320 > th dose independent rect. 10 18
432 251.48 humidity 50 4320 > th dose independent rect. 14 23
464 251.58 wind 1 43200 < th dose independent rect. 22 2
471 251.60 wind 7 43200 > th dose independent rect. 8 1
479 251.61 humidity 60 14400 < th dose independent rect. 18 14
488 251.63 wind 3 1440 > th dose dependent rect. 20 8
493 251.66 temperature 25 1440 < th dose dependent rect. 11 5
502 251.70 humidity 50 4320 > th dose dependent rect. 10 1
511 251.75 humidity 60 14400 < th dose independent rect. 18 4
520 251.75 humidity 60 14400 > th dose independent rect. 18 14
525 251.77 temperature 20 720 < th dose independent rect. 18 1
530 251.79 humidity 50 4320 > th dose dependent rect. 8 4
534 251.82 humidity 90 4320 < th dose dependent rect. 10 1
538 251.83 humidity 90 4320 < th dose dependent rect. 9 3
572 251.96 humidity 60 14400 > th dose independent rect. 18 6
578 251.99 humidity 60 14400 > th dose independent rect. 18 4
588 252.01 humidity 60 14400 > th dose independent rect. 18 9
601 252.04 temperature 15 4320 > th dose independent rect. 7 9
636 252.12 humidity 50 4320 < th dose independent sin 4 NA
645 252.14 temperature 25 1440 < th dose dependent rect. 11 8
646 252.15 temperature 15 4320 > th dose independent rect. 7 3
658 252.18 radiation 10 14400 > th dose dependent rect. 17 13
669 252.21 humidity 50 4320 < th dose independent rect. 16 22
675 252.23 wind 5 720 > th dose dependent rect. 19 13
683 252.26 humidity 50 4320 < th dose independent sin 9 NA
723 252.34 radiation 10 14400 > th dose dependent rect. 17 1
741 252.35 temperature 15 4320 > th dose independent rect. 7 11
742 252.35 radiation 40 14400 < th dose independent rect. 15 18
766 252.41 temperature 20 1440 < th dose independent rect. 4 8
769 252.43 humidity 50 4320 < th dose independent rect. 10 7
806 252.47 atmosphere 1015 4320 > th dose dependent rect. 3 2
813 252.48 humidity 50 14400 < th dose dependent rect. 16 19
831 252.52 temperature 20 1440 > th dose independent rect. 9 15
832 252.52 humidity 50 14400 < th dose dependent rect. 16 1
833 252.53 radiation 30 14400 < th dose independent rect. 11 1
838 252.54 humidity 50 14400 < th dose independent rect. 11 1
839 252.54 temperature 20 1440 > th dose independent rect. 4 8
868 252.58 humidity 50 4320 < th dose dependent rect. 15 21
870 252.59 humidity 50 4320 < th dose independent rect. 13 23
873 252.59 temperature 20 4320 < th dose dependent rect. 4 15
887 252.62 humidity 50 14400 > th dose independent rect. 17 16
891 252.63 temperature 15 4320 > th dose independent rect. 11 5
896 252.64 temperature 20 1440 < th dose independent rect. 9 15
901 252.66 humidity 50 4320 < th dose independent no NA NA