FiT-DB / Search/ Help/ Sample detail

Os06g0725300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Expansin/Lol pI family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.79 (0.034) R2 : 0.847
β1 : -1.14 (0.124) R2dD : 0.0295 R2D : 0.0203
β2 : 3.29 (0.103) R2dC : 0.494 R2C : 0.701
β3 : 1.94 (0.148) R2dE : 0.0832 R2E : 0.309
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.692 (0.0723) R2dN8 : 0.0412 R2N8 : 0.0127
σ : 0.633
deviance : 185
__
_____
C
peak time of C : 8.08
E
wheather : precipitation
threshold : 0.1095
memory length : 233
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 16.6
open length of G : 22

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = precipitation, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
172.08 0.616 9.79 -1.21 3.31 1.89 1.31 1.68 -0.7 8.09 0.432 226 16.6 22
174.73 0.616 9.78 -1.2 3.3 1.9 1.86 -- -0.688 8.11 0.3382 233 16.5 22
175.87 0.618 9.8 -1.2 3.3 1.88 -- 2.72 -0.709 8.05 0.4081 226 16.6 22
185 0.633 9.79 -1.14 3.29 1.94 -- -- -0.692 8.08 0.1095 233 16.6 22
323.28 0.837 9.81 -0.948 -- 3.49 -- 2.47 -0.61 -- 1.5 595 15.2 22.4
227.97 0.708 9.77 -1.31 4.11 -- 2.07 -- -0.712 7.65 -- -- -- --
240.02 0.726 9.77 -1.26 4.11 -- -- -- -0.715 7.62 -- -- -- --
306.77 0.816 9.87 -1.22 -- 2.96 -- -- -0.664 -- 3.175 639 15.8 20.8
219.06 0.689 9.77 -- 3.31 1.96 -- -- -0.552 8.08 0.1123 233 16.4 22.2
1147.79 1.58 9.87 -1.21 -- -- -- -- -0.654 -- -- -- -- --
282.11 0.786 9.74 -- 4.1 -- -- -- -0.575 7.64 -- -- -- --
280.06 0.779 9.84 -- -- 3.95 -- -- -0.561 -- 2.778 698 18 15.6
1186.19 1.61 9.84 -- -- -- -- -- -0.52 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 175.08 precipitation 0.1 270 < th dose independent rect. 16 22
2 175.08 precipitation 0.1 270 < th dose dependent rect. 16 22
3 176.58 precipitation 0.1 270 < th dose independent rect. 9 13
4 176.58 precipitation 0.1 270 < th dose dependent rect. 9 13
5 177.58 precipitation 0.1 270 < th dose independent rect. 17 20
6 177.58 precipitation 0.1 270 < th dose dependent rect. 17 20
7 177.89 humidity 50.0 270 > th dose independent rect. 14 2
10 178.78 precipitation 0.1 270 < th dose independent rect. 3 10
11 178.78 precipitation 0.1 270 < th dose dependent rect. 3 10
14 178.98 wind 9.0 270 < th dose independent rect. 13 14
16 179.44 precipitation 0.1 90 < th dose independent rect. 19 20
17 179.44 precipitation 0.1 90 < th dose dependent rect. 19 20
24 180.39 temperature 10.0 270 > th dose independent rect. 22 11
25 180.39 humidity 50.0 270 > th dose independent rect. 22 11
26 180.39 atmosphere 995.0 270 > th dose independent rect. 22 11
27 180.39 temperature 10.0 270 > th dose independent rect. 9 13
28 180.41 wind 9.0 270 < th dose independent rect. 22 11
29 180.53 wind 9.0 270 < th dose independent rect. 13 4
33 180.82 wind 1.0 270 > th dose independent rect. 13 4
34 180.84 temperature 10.0 270 > th dose dependent rect. 18 4
39 181.33 radiation 40.0 270 < th dose independent rect. 22 11
40 181.41 wind 9.0 270 < th dose independent rect. 14 2
42 181.50 temperature 30.0 270 < th dose independent rect. 22 11
43 181.51 wind 9.0 270 < th dose independent rect. 21 21
44 181.52 temperature 10.0 270 > th dose independent rect. 3 10
45 181.52 atmosphere 995.0 270 > th dose independent rect. 3 10
46 181.52 atmosphere 1015.0 270 < th dose independent rect. 3 10
47 181.52 temperature 10.0 270 > th dose independent rect. 13 14
49 181.74 wind 1.0 270 > th dose independent rect. 14 2
50 181.94 temperature 10.0 270 > th dose independent rect. 13 4
52 181.94 atmosphere 1010.0 270 < th dose independent rect. 13 4
54 181.94 temperature 10.0 270 > th dose independent rect. 17 20
55 182.01 wind 9.0 90 < th dose independent rect. 15 4
60 182.37 radiation 40.0 90 < th dose independent rect. 14 5
61 182.48 temperature 10.0 270 > th dose independent rect. 14 2
63 182.48 atmosphere 1010.0 270 < th dose independent rect. 14 2
65 182.48 temperature 10.0 270 > th dose independent rect. 16 22
66 182.51 precipitation 0.1 270 < th dose independent rect. 14 2
67 182.51 precipitation 0.1 270 < th dose dependent rect. 14 2
68 182.52 atmosphere 995.0 90 > th dose independent rect. 19 20
69 182.53 atmosphere 995.0 270 > th dose independent rect. 17 20
78 182.80 precipitation 0.1 270 < th dose independent rect. 18 3
79 182.80 precipitation 0.1 270 < th dose dependent rect. 18 3
83 183.02 temperature 10.0 90 > th dose independent rect. 15 4
85 183.02 atmosphere 1010.0 90 < th dose independent rect. 15 4
87 183.02 temperature 10.0 90 > th dose independent rect. 19 20
88 183.04 wind 9.0 270 < th dose independent rect. 3 10
89 183.08 radiation 40.0 10 < th dose dependent rect. 14 5
90 183.14 atmosphere 1015.0 270 < th dose independent rect. 9 13
92 183.17 precipitation 0.1 270 < th dose independent rect. 13 4
93 183.17 precipitation 0.1 270 < th dose dependent rect. 13 4
96 183.22 wind 9.0 270 < th dose independent rect. 17 20
97 183.28 atmosphere 1015.0 90 < th dose independent rect. 19 20
101 183.50 atmosphere 1015.0 270 < th dose independent rect. 18 3
109 183.68 wind 9.0 90 < th dose independent rect. 19 20
122 183.97 atmosphere 1015.0 270 < th dose independent rect. 17 20
123 183.97 radiation 20.0 10 < th dose dependent rect. 23 20
132 184.02 radiation 10.0 270 < th dose independent rect. 18 3
135 184.20 radiation 40.0 90 < th dose dependent rect. 14 4
139 184.28 radiation 20.0 270 < th dose dependent rect. 18 3
142 184.29 temperature 10.0 270 > th dose independent rect. 18 3
143 184.29 humidity 50.0 270 > th dose independent rect. 18 3
147 184.29 temperature 10.0 270 > th dose independent rect. 21 21
149 184.33 wind 9.0 270 < th dose independent rect. 18 3
151 184.36 wind 1.0 270 > th dose independent rect. 18 3
161 184.66 atmosphere 995.0 270 > th dose independent rect. 18 3
162 184.69 wind 9.0 270 < th dose independent rect. 9 13
194 185.13 wind 9.0 10 < th dose independent rect. 15 4
204 185.34 wind 1.0 10 > th dose independent rect. 15 4
210 185.53 humidity 50.0 270 > th dose independent rect. 17 20
218 185.66 wind 1.0 90 > th dose dependent rect. 15 4
224 185.84 temperature 10.0 270 > th dose dependent rect. 17 6
231 185.94 atmosphere 1015.0 90 < th dose dependent rect. 15 4
232 185.95 temperature 10.0 10 > th dose independent rect. 15 4
234 185.95 atmosphere 1010.0 10 < th dose independent rect. 15 4
236 185.95 temperature 10.0 10 > th dose independent rect. 19 20
237 185.95 atmosphere 995.0 10 > th dose independent rect. 19 20
241 186.09 radiation 40.0 10 < th dose dependent rect. 12 7
244 186.15 radiation 40.0 90 < th dose dependent rect. 23 20
255 186.25 wind 9.0 270 < th dose dependent rect. 18 3
257 186.26 atmosphere 1015.0 10 < th dose independent rect. 19 20
263 186.39 radiation 40.0 270 < th dose dependent rect. 22 11
309 186.87 temperature 30.0 90 < th dose independent rect. 19 4
347 187.08 precipitation 0.1 10 < th dose independent rect. 15 4
349 187.08 precipitation 0.1 10 < th dose dependent rect. 15 4
362 187.19 precipitation 0.1 270 < th dose independent rect. 22 11
363 187.19 precipitation 0.1 270 < th dose dependent rect. 22 11
378 187.48 wind 1.0 270 > th dose independent rect. 17 20
387 187.54 humidity 50.0 10 > th dose dependent rect. 15 4
415 187.91 atmosphere 995.0 270 > th dose independent rect. 13 4
436 188.13 temperature 10.0 270 > th dose dependent rect. 22 10
449 188.24 humidity 50.0 270 > th dose independent rect. 3 10
454 188.28 radiation 1.0 270 > th dose independent rect. 14 2
499 188.74 atmosphere 1015.0 10 < th dose dependent rect. 15 4
509 188.85 humidity 90.0 270 < th dose independent rect. 14 2
510 188.85 temperature 10.0 1440 > th dose independent rect. 16 4
514 188.85 temperature 10.0 1440 > th dose independent rect. 20 20
523 188.91 humidity 50.0 90 > th dose independent rect. 19 19
524 188.92 atmosphere 995.0 270 > th dose independent rect. 9 13
582 189.48 radiation 40.0 90 < th dose independent rect. 23 20
588 189.56 atmosphere 995.0 270 > th dose independent rect. 14 2
612 189.87 radiation 20.0 10 < th dose dependent rect. 10 9
613 189.87 humidity 50.0 270 > th dose dependent rect. 22 11
643 189.99 radiation 10.0 10 < th dose independent rect. 23 20
669 190.24 temperature 10.0 270 > th dose dependent rect. 14 2
675 190.26 wind 9.0 270 < th dose dependent rect. 19 1
682 190.44 humidity 90.0 270 < th dose independent rect. 13 4
693 190.52 atmosphere 995.0 90 > th dose independent rect. 15 4
696 190.55 humidity 50.0 10 > th dose independent rect. 19 20
697 190.56 precipitation 0.1 270 < th dose independent rect. 22 20
698 190.56 precipitation 0.1 270 < th dose dependent rect. 22 20
706 190.64 humidity 50.0 270 > th dose independent rect. 22 20
707 190.64 wind 9.0 90 < th dose dependent rect. 15 3
722 190.76 atmosphere 1015.0 270 < th dose independent rect. 22 20
726 190.81 atmosphere 1015.0 270 < th dose independent rect. 23 18
767 191.20 wind 1.0 10 > th dose dependent rect. 16 3
804 191.53 radiation 1.0 270 > th dose independent rect. 13 4
812 191.56 humidity 90.0 30 < th dose independent rect. 19 20
838 191.69 atmosphere 1015.0 270 < th dose dependent rect. 18 3
858 191.85 radiation 10.0 10 < th dose independent rect. 10 9
866 191.93 precipitation 0.1 270 < th dose independent rect. 13 14
868 191.93 precipitation 0.1 270 < th dose dependent rect. 13 14
876 191.97 temperature 10.0 90 > th dose dependent rect. 19 20
891 192.06 humidity 50.0 270 > th dose independent rect. 23 18
910 192.12 wind 9.0 90 < th dose independent rect. 1 17
911 192.13 radiation 20.0 90 < th dose independent rect. 23 20
912 192.13 wind 9.0 270 < th dose dependent rect. 13 4
921 192.17 temperature 20.0 90 > th dose independent rect. 1 17
955 192.40 temperature 20.0 10 > th dose independent rect. 19 5
959 192.41 humidity 50.0 90 > th dose dependent rect. 19 4
972 192.52 atmosphere 995.0 10 > th dose independent rect. 15 4
975 192.54 temperature 10.0 270 > th dose dependent rect. 13 4
982 192.60 wind 9.0 270 < th dose dependent rect. 22 11