BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0228900 Os02g0228900|AK121870
(300 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0228900 Similar to Auxin-responsive protein IAA18 (Ind... 503 e-142
Os05g0523300 Similar to IAA8 (Fragment) 175 4e-44
Os01g0741900 Similar to Auxin-responsive protein IAA26 (Ind... 173 2e-43
Os01g0190300 Similar to Auxin-responsive protein IAA26 (Ind... 142 2e-34
Os02g0817600 AUX/IAA protein family protein 110 1e-24
Os08g0109400 AUX/IAA protein family protein 108 5e-24
Os12g0601300 Similar to Auxin-responsive protein (Aux/IAA) ... 108 6e-24
Os03g0633500 Similar to Auxin-responsive protein (Aux/IAA) ... 103 2e-22
Os05g0559400 Similar to IAA11 (Fragment) 102 3e-22
Os06g0335500 AUX/IAA protein family protein 101 7e-22
Os01g0231000 Similar to Auxin-responsive protein (Aux/IAA) ... 100 9e-22
Os03g0742900 Aux /IAA protein 100 1e-21
Os01g0675700 Similar to Auxin-responsive protein IAA14 (Ind... 100 1e-21
Os05g0178600 Similar to Auxin-responsive protein (Aux/IAA) ... 96 5e-20
Os07g0182400 AUX/IAA protein family protein 95 7e-20
Os06g0355300 92 5e-19
Os01g0178500 Similar to Auxin-responsive protein (Aux/IAA) ... 89 3e-18
Os06g0597000 Similar to Auxin responsive protein IAA-Re 89 5e-18
Os02g0723400 AUX/IAA protein family protein 84 1e-16
Os12g0601400 Similar to Auxin-responsive protein (Aux/IAA) ... 81 8e-16
Os09g0527700 Similar to Auxin-induced protein IAA4 79 4e-15
Os06g0314300 Hypothetical protein 76 2e-14
Os03g0633800 Similar to IAA6 (Fragment) 76 4e-14
Os03g0797800 AUX/IAA protein family protein 71 8e-13
>Os02g0228900 Similar to Auxin-responsive protein IAA18 (Indoleacetic
acid-induced protein 18)
Length = 300
Score = 503 bits (1294), Expect = e-142, Method: Compositional matrix adjust.
Identities = 252/300 (84%), Positives = 252/300 (84%)
Query: 1 MGEASESMKKISRGRLGGSWMGEPSDHHRHGDXXXXXXXXXXXXXXXPGGGWRAACRDKG 60
MGEASESMKKISRGRLGGSWMGEPSDHHRHGD PGGGWRAACRDKG
Sbjct: 1 MGEASESMKKISRGRLGGSWMGEPSDHHRHGDEQEEEEKTLELSLGLPGGGWRAACRDKG 60
Query: 61 TTTKHSIXXXXXXXXXXGDKSSMLSLGYSTLVSHSQGKANKNKGSXXXXXXXXXXXTGNN 120
TTTKHSI GDKSSMLSLGYSTLVSHSQGKANKNKGS TGNN
Sbjct: 61 TTTKHSIAAAAAADDDDGDKSSMLSLGYSTLVSHSQGKANKNKGSPEEEEAHPPPATGNN 120
Query: 121 ALASNNNGCFQTRSPSTPVVGWPPVRTFRRNLATSSKASLELQNGXXXXXXXXXXXXPFI 180
ALASNNNGCFQTRSPSTPVVGWPPVRTFRRNLATSSKASLELQNG PFI
Sbjct: 121 ALASNNNGCFQTRSPSTPVVGWPPVRTFRRNLATSSKASLELQNGKKAAKAEEIKRAPFI 180
Query: 181 KINMDGVPIGRKIDLNAFDSYEKLSLAVDKLFRGLLAAQRDPLTAGAKDCQQEDVAISGL 240
KINMDGVPIGRKIDLNAFDSYEKLSLAVDKLFRGLLAAQRDPLTAGAKDCQQEDVAISGL
Sbjct: 181 KINMDGVPIGRKIDLNAFDSYEKLSLAVDKLFRGLLAAQRDPLTAGAKDCQQEDVAISGL 240
Query: 241 LDGTGEYTLVYEDYEGDKVLVGDVPWGMFVSSVKRLRVLKTSDLSSSLITSGRKRTAAEC 300
LDGTGEYTLVYEDYEGDKVLVGDVPWGMFVSSVKRLRVLKTSDLSSSLITSGRKRTAAEC
Sbjct: 241 LDGTGEYTLVYEDYEGDKVLVGDVPWGMFVSSVKRLRVLKTSDLSSSLITSGRKRTAAEC 300
>Os05g0523300 Similar to IAA8 (Fragment)
Length = 327
Score = 175 bits (443), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 88/162 (54%), Positives = 111/162 (68%), Gaps = 3/162 (1%)
Query: 131 QTRSPSTPVVGWPPVRTFRRNLA--TSSKASLELQNGXXXXXXXXX-XXXPFIKINMDGV 187
Q R PVVGWPP+R+FRRNL +S K S E QN P +KINMDG+
Sbjct: 160 QGRGAIPPVVGWPPIRSFRRNLTNGSSFKQSPERQNDEADDKAKPICKKRPLVKINMDGI 219
Query: 188 PIGRKIDLNAFDSYEKLSLAVDKLFRGLLAAQRDPLTAGAKDCQQEDVAISGLLDGTGEY 247
PIGRK+DL +DSY+KLS AV++LFRG L AQ+D A + + ED SGLLDGTG Y
Sbjct: 220 PIGRKVDLQIYDSYQKLSSAVEELFRGFLEAQKDLSCAESGEQGAEDKIFSGLLDGTGVY 279
Query: 248 TLVYEDYEGDKVLVGDVPWGMFVSSVKRLRVLKTSDLSSSLI 289
TLVYED +GD++L GD+PW +FVS+VKRLRV++ S+L +I
Sbjct: 280 TLVYEDNDGDRMLAGDIPWKVFVSTVKRLRVMRRSELPHDMI 321
>Os01g0741900 Similar to Auxin-responsive protein IAA26 (Indoleacetic
acid-induced protein 26) (Phytochrome-associated protein
1)
Length = 335
Score = 173 bits (438), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 91/162 (56%), Positives = 112/162 (69%), Gaps = 3/162 (1%)
Query: 131 QTRSPSTPVVGWPPVRTFRRNLATSS--KASLELQN-GXXXXXXXXXXXXPFIKINMDGV 187
Q R + PVVGWPP+R+FRRNLA+SS K S E QN P +KINMDG+
Sbjct: 168 QGRGAAAPVVGWPPIRSFRRNLASSSSSKHSPEPQNDNANAKVTLTCKKNPLVKINMDGI 227
Query: 188 PIGRKIDLNAFDSYEKLSLAVDKLFRGLLAAQRDPLTAGAKDCQQEDVAISGLLDGTGEY 247
PIGRKIDL A++SY+ LS AV +LF G L AQ+D A +D LLDG+GEY
Sbjct: 228 PIGRKIDLAAYNSYDGLSSAVKQLFHGFLQAQKDQTNAQIAQQGADDKIFYQLLDGSGEY 287
Query: 248 TLVYEDYEGDKVLVGDVPWGMFVSSVKRLRVLKTSDLSSSLI 289
TLVYED EGD++LVGDVPW +FVS+ KRLRVL++S+LS +LI
Sbjct: 288 TLVYEDSEGDRMLVGDVPWKVFVSTAKRLRVLRSSELSHTLI 329
>Os01g0190300 Similar to Auxin-responsive protein IAA26 (Indoleacetic
acid-induced protein 26) (Phytochrome-associated protein
1)
Length = 238
Score = 142 bits (359), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 88/170 (51%), Positives = 107/170 (62%), Gaps = 18/170 (10%)
Query: 142 WPPVRTFRRNLATSSKASLELQ---------NGXXXXXXXXXXXXPFIKINMDGVPIGRK 192
WPPVR+FRRNLA+SS +S + NG F+KINMDGVPIGRK
Sbjct: 74 WPPVRSFRRNLASSSSSSSKQAPPPPSSSPQNGDKASKDGGAEKGMFVKINMDGVPIGRK 133
Query: 193 IDLNAFDSYEKLSLAVDKLFRGLLAAQRDPLTAGAKDCQQEDVAISGLLDGTGEYTLVYE 252
+DL A+ Y +LS AVDKLFRGLLAAQ A ++ G GEYTLVYE
Sbjct: 134 VDLAAYGGYAQLSAAVDKLFRGLLAAQSAAADGEADAAAAGEMV------GGGEYTLVYE 187
Query: 253 DYEGDKVLVGDVPWGMFVSSVKRLRVLKTSDL-SSSLITSG--RKRTAAE 299
D EGD++LVGDVPW MF+++ KRLRVLK+SDL SL+ + RKR AA+
Sbjct: 188 DDEGDRMLVGDVPWQMFIATAKRLRVLKSSDLPPPSLMRAAGSRKRAAAD 237
>Os02g0817600 AUX/IAA protein family protein
Length = 280
Score = 110 bits (275), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 65/162 (40%), Positives = 85/162 (52%), Gaps = 31/162 (19%)
Query: 139 VVGWPPVRTFRRN-LATSSKASLELQNGXXXXXXXXXXXXP------------FIKINMD 185
VVGWPP+R FR N L +K + + ++K+NMD
Sbjct: 111 VVGWPPIRQFRMNSLFNQAKENTSETDTKKTATNESDVQKDKEEGEKKGRVAGWVKVNMD 170
Query: 186 GVPIGRKIDLNAFDSYEKLSLAVDKLFR----GLLAAQRDPLTAGAKDCQQEDVAISGLL 241
G IGRK+DLNA SY+ L+LA++ +F GL C + LL
Sbjct: 171 GEVIGRKVDLNAHRSYKTLALALELMFTKPSIGL--------------CASHNTNSLKLL 216
Query: 242 DGTGEYTLVYEDYEGDKVLVGDVPWGMFVSSVKRLRVLKTSD 283
D + EY L YED +GD +LVGDVPW MFVSSVKRLR+++TSD
Sbjct: 217 DNSAEYQLTYEDRDGDWMLVGDVPWEMFVSSVKRLRIMRTSD 258
>Os08g0109400 AUX/IAA protein family protein
Length = 246
Score = 108 bits (270), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 62/166 (37%), Positives = 89/166 (53%), Gaps = 23/166 (13%)
Query: 136 STPVVGWPPVRTFRRNLATSSKA------------SLELQNGXXXXXXXXXXXXPFIKIN 183
S +VGWPPVR FR+NL+T A S E F+K+N
Sbjct: 90 SAQLVGWPPVRAFRKNLSTPKPADADDLMNKVKLCSDEGHGSRCAAQERRSSSTMFVKVN 149
Query: 184 MDGVPIGRKIDLNAFDSYEKLSLAVDKLFRGLLAAQRDPLTAGAKDCQQEDVAISGLLDG 243
++G +GRKIDL A SY+ LS A+ +F G L+ D + + QQ + +G
Sbjct: 150 LEGYAVGRKIDLKAHRSYDSLSQALQSMFHGFLS---DGIATRDNELQQ-------MEEG 199
Query: 244 TGE-YTLVYEDYEGDKVLVGDVPWGMFVSSVKRLRVLKTSDLSSSL 288
+ + Y LVYED EGD++LVGDVPW +F++SVKRL + + + + L
Sbjct: 200 SKKRYVLVYEDNEGDRMLVGDVPWELFIASVKRLYIAQDPRVHAKL 245
>Os12g0601300 Similar to Auxin-responsive protein (Aux/IAA) (Fragment)
Length = 277
Score = 108 bits (269), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 64/160 (40%), Positives = 90/160 (56%), Gaps = 18/160 (11%)
Query: 131 QTRSPSTPVVGWPPVRTFRRN-LATSSKASLELQNGXXXXXXXXXXXXPFIKINMDGVPI 189
+ R+P VVGWPPVR++R+N LA + + +G F+K++MDG P
Sbjct: 113 KPRAPKAQVVGWPPVRSYRKNILAVQADKGKDAADGGGDKSGAGAAAAAFVKVSMDGAPY 172
Query: 190 GRKIDLNAFDSYEKLSLAVDKLFRGLLAAQRDPLTAGAKDCQQEDV------AISGLLDG 243
RK+DL + SY +LS A++K+F T G +C V I+ LL+G
Sbjct: 173 LRKVDLKMYKSYLELSKALEKMFSSF--------TIG--NCGSHGVNGMNESKIADLLNG 222
Query: 244 TGEYTLVYEDYEGDKVLVGDVPWGMFVSSVKRLRVLKTSD 283
+ EY YED +GD +LVGDVPW MFV S KRLR++K S+
Sbjct: 223 S-EYVPTYEDKDGDWMLVGDVPWEMFVESCKRLRIMKGSE 261
>Os03g0633500 Similar to Auxin-responsive protein (Aux/IAA) (Fragment)
Length = 241
Score = 103 bits (256), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 61/154 (39%), Positives = 81/154 (52%), Gaps = 28/154 (18%)
Query: 131 QTRSPSTPVVGWPPVRTFRRN-LATSSKASLELQNGXXXXXXXXXXXXPFIKINMDGVPI 189
+ R+P VVGWPPVR+FR+N LA KA+ +K++MDG P
Sbjct: 93 KPRAPKAQVVGWPPVRSFRKNVLAEKCKAAA------------------LVKVSMDGAPY 134
Query: 190 GRKIDLNAFDSYEKLSLAVDKLFRGLLAAQRDPLTAGAKDCQQEDVAISGLLDGTGEYTL 249
RKID+ + SY +LS+A +F T G Q+ + L D EY
Sbjct: 135 LRKIDVAMYKSYPELSMAFQNMFTSF--------TIGKCGSHQQLKESNKLRDDL-EYVP 185
Query: 250 VYEDYEGDKVLVGDVPWGMFVSSVKRLRVLKTSD 283
YED +GD +LVGDVPW MFV S KRLR++K S+
Sbjct: 186 TYEDKDGDWMLVGDVPWEMFVESCKRLRIMKGSE 219
>Os05g0559400 Similar to IAA11 (Fragment)
Length = 281
Score = 102 bits (255), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 57/154 (37%), Positives = 87/154 (56%), Gaps = 25/154 (16%)
Query: 139 VVGWPPVRTFRRN-LATSSKASLELQNGXXXXXXXXXXXXPFIKINMDGVPIGRKIDLNA 197
VVGWPPVR++R+N LA S+ + G ++K++MDG P RK+DL
Sbjct: 128 VVGWPPVRSYRKNTLAASATKTKGEDQGKSEVGCC------YVKVSMDGAPYLRKVDLKT 181
Query: 198 FDSYEKLSLAVDKLFRGLLA--------AQRDPLTAGAKDCQQEDVAISGLLDGTGEYTL 249
+ SYE LSLA++K+F + ++RD LT G++ +D EY L
Sbjct: 182 YSSYEDLSLALEKMFSCFITGRSSSHKTSKRDRLTDGSRADALKD----------QEYVL 231
Query: 250 VYEDYEGDKVLVGDVPWGMFVSSVKRLRVLKTSD 283
YED + D +LVGD+PW +F +S ++LR+++ SD
Sbjct: 232 TYEDKDADWMLVGDLPWDLFTTSCRKLRIMRGSD 265
>Os06g0335500 AUX/IAA protein family protein
Length = 266
Score = 101 bits (251), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 58/153 (37%), Positives = 86/153 (56%), Gaps = 19/153 (12%)
Query: 139 VVGWPPVRTFRRNLATSSKASLELQNGXXXXXXXXXXXXPFIKINMDGVPIGRKIDLNAF 198
VVGWPP+R++R+N S+ +L+ ++ ++K++MDG P RK+DL +
Sbjct: 109 VVGWPPIRSYRKNTMAMSQPALKGKDDGEAKQAPASGCL-YVKVSMDGAPYLRKVDLKMY 167
Query: 199 DSYEKLSLAVDKLFRGLLAAQ--------RDPLTAGAKDCQQEDVAISGLLDGTGEYTLV 250
+Y++LSLA++K+F RD G DC+ D L +GT E L
Sbjct: 168 KNYKELSLALEKMFSCFTVGHGESNGKSGRD----GLSDCRLMD-----LKNGT-ELVLT 217
Query: 251 YEDYEGDKVLVGDVPWGMFVSSVKRLRVLKTSD 283
YED + D +LVGDVPW MF S +RLR++K SD
Sbjct: 218 YEDKDEDWMLVGDVPWRMFTDSCRRLRIMKGSD 250
>Os01g0231000 Similar to Auxin-responsive protein (Aux/IAA) (Fragment)
Length = 263
Score = 100 bits (250), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 54/145 (37%), Positives = 85/145 (58%), Gaps = 21/145 (14%)
Query: 139 VVGWPPVRTFRRNLATSSKASLELQNGXXXXXXXXXXXXPFIKINMDGVPIGRKIDLNAF 198
VVGWPP+R++R+N + A+ ++++ ++K++MDG P RK+DL +
Sbjct: 124 VVGWPPIRSYRKN----TMATNQIKSNKEDVDAKQGQGFLYVKVSMDGAPYLRKVDLKTY 179
Query: 199 DSYEKLSLAVDKLFRGLLAAQRDPLTAGAKDCQQEDVAISGLLDGTGEYTLVYEDYEGDK 258
+Y+ +SL ++K+F G + GA++ Q+D GEY L YED +GD
Sbjct: 180 KNYKDMSLGLEKMFIGFSTGKE-----GAEN--QKD----------GEYVLTYEDKDGDW 222
Query: 259 VLVGDVPWGMFVSSVKRLRVLKTSD 283
+LVGDVPW MF S +RLR++K SD
Sbjct: 223 MLVGDVPWEMFTDSCRRLRIMKGSD 247
>Os03g0742900 Aux /IAA protein
Length = 236
Score = 100 bits (250), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 60/150 (40%), Positives = 81/150 (54%), Gaps = 23/150 (15%)
Query: 140 VGWPPVRTFRRNLAT----SSKASLEL--QNGXXXXXXXXXXXXPFIKINMDGVPIGRKI 193
VGWPPVR+FRRN+ T SK E Q F+K++MDG P RK+
Sbjct: 88 VGWPPVRSFRRNIMTVQSVKSKKEEEADKQQQQPAANASGSNSSAFVKVSMDGAPYLRKV 147
Query: 194 DLNAFDSYEKLSLAVDKLFRGLLAAQRDPLTAGAKDCQQEDVAISGLLDGTGEYTLVYED 253
DL ++SY+ LSLA+ K+F TA + + ++G+ T YED
Sbjct: 148 DLKMYNSYKDLSLALQKMF--------GTFTATGNNMNE--------VNGSDAVT-TYED 190
Query: 254 YEGDKVLVGDVPWGMFVSSVKRLRVLKTSD 283
+GD +LVGDVPW MFV S KRLR++K S+
Sbjct: 191 KDGDWMLVGDVPWQMFVESCKRLRIMKGSE 220
>Os01g0675700 Similar to Auxin-responsive protein IAA14 (Indoleacetic
acid-induced protein 14) (SOLITARY-ROOT protein)
Length = 271
Score = 100 bits (250), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 54/153 (35%), Positives = 82/153 (53%), Gaps = 23/153 (15%)
Query: 139 VVGWPPVRTFRRNLATSSKASLELQNGXXXXXXXXXXXXPFIKINMDGVPIGRKIDLNAF 198
VVGWPPVR +R+N +S + G ++K++MDG P RK+DL +
Sbjct: 118 VVGWPPVRNYRKNTLAASAS-----KGKGEDKGTAEGGPLYVKVSMDGAPYLRKVDLKMY 172
Query: 199 DSYEKLSLAVDKLFRGLLAAQ--------RDPLTAGAKDCQQEDVAISGLLDGTGEYTLV 250
SYE LS+A++K+F + Q RD LT G+K +D EY L
Sbjct: 173 SSYEDLSMALEKMFSCFITGQSGLRKSSNRDRLTNGSKADALQDQ----------EYVLT 222
Query: 251 YEDYEGDKVLVGDVPWGMFVSSVKRLRVLKTSD 283
YED + D +LVGD+PW +F + ++L++++ SD
Sbjct: 223 YEDKDADWMLVGDLPWDLFTTICRKLKIMRGSD 255
>Os05g0178600 Similar to Auxin-responsive protein (Aux/IAA) (Fragment)
Length = 212
Score = 95.5 bits (236), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 61/163 (37%), Positives = 87/163 (53%), Gaps = 28/163 (17%)
Query: 125 NNNGCFQTRSPSTP---VVGWPPVRTFRRNLATSSKASLELQNGXXXXXXXXXXXXPFIK 181
N G T SP +P VVGWPPVR FR+N + A+ + F+K
Sbjct: 65 NRLGSTATESPPSPKARVVGWPPVRAFRKNALAALAAASSSKAK-------------FVK 111
Query: 182 INMDGVPIGRKIDLNAFDSYEKLSLAV-DKLFRGLLAAQRDPLTAGAKDCQQEDVAISGL 240
+ +DG P RK+DL A+ Y++L A+ DK F + G ++ + D A+SG
Sbjct: 112 VAVDGAPYLRKVDLEAYRGYDQLLAALQDKFFSHFTIRK-----LGNEEMKLVD-AVSG- 164
Query: 241 LDGTGEYTLVYEDYEGDKVLVGDVPWGMFVSSVKRLRVLKTSD 283
EY YED +GD +LVGDVPW MFV + +RLR++K+S+
Sbjct: 165 ----NEYVPTYEDKDGDWMLVGDVPWKMFVETCQRLRLMKSSE 203
>Os07g0182400 AUX/IAA protein family protein
Length = 219
Score = 94.7 bits (234), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 59/170 (34%), Positives = 87/170 (51%), Gaps = 23/170 (13%)
Query: 117 TGNNALASNNNGCFQTRSPS-TPVVGWPPVRTFRRNL--ATSSKASLELQNGXXXXXXXX 173
TG +A ++ T +P+ VVGWPPVR +RRN ++ A+ + G
Sbjct: 68 TGTSAAGDEHDD--DTAAPAKAQVVGWPPVRAYRRNTFHQAAAAAAATKKGGDEKQKQQQ 125
Query: 174 XXXXPFIKINMDGVPIGRKIDLNAFDSYEKLSLAVDKLFRGLLAAQRDPLTAGAKDCQQE 233
++K++MDG P RK+DL Y +L A+D LF +A
Sbjct: 126 QGGGLYVKVSMDGAPYLRKVDLKMCKGYRELREALDLLFTKCFSA--------------- 170
Query: 234 DVAISGLLDGTGEYTLVYEDYEGDKVLVGDVPWGMFVSSVKRLRVLKTSD 283
A G DG ++ + YED +GD +LVGDVPW MF+SS K+LR++K S+
Sbjct: 171 -TASDGCSDG--QFAIAYEDKDGDLMLVGDVPWEMFISSCKKLRIMKGSE 217
>Os06g0355300
Length = 149
Score = 92.0 bits (227), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 55/144 (38%), Positives = 76/144 (52%), Gaps = 23/144 (15%)
Query: 136 STPVVGWPPVRTFRRNLATSSKA------------SLELQNGXXXXXXXXXXXXPFIKIN 183
S +VGWPPVRTFR+NL+T A S E F+K+N
Sbjct: 10 SAQLVGWPPVRTFRKNLSTPKPADADDLMNKMKPCSDEGHGSRDAAQERRPSSTMFVKVN 69
Query: 184 MDGVPIGRKIDLNAFDSYEKLSLAVDKLFRGLLAAQRDPLTAGAKDCQQEDVAISGLLDG 243
++G +GRKIDL A SY+ LS A+ +F G L+ D + + Q+ + +G
Sbjct: 70 LEGYAVGRKIDLKAHRSYDSLSQALQSMFHGFLS---DGIATRDNELQR-------MEEG 119
Query: 244 TGE-YTLVYEDYEGDKVLVGDVPW 266
+ + Y LVYED EGD++LVGDVPW
Sbjct: 120 SKKRYVLVYEDNEGDRMLVGDVPW 143
>Os01g0178500 Similar to Auxin-responsive protein (Aux/IAA) (Fragment)
Length = 199
Score = 89.4 bits (220), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 55/146 (37%), Positives = 80/146 (54%), Gaps = 34/146 (23%)
Query: 139 VVGWPPVRTFRRNLATSSKASLELQNGXXXXXXXXXXXXPFIKINMDGVPIGRKIDLNAF 198
VVGWPPVR+FR+N A ++K F+K+ +DG P RK+DL A+
Sbjct: 77 VVGWPPVRSFRKN-ALAAK---------------------FVKVAVDGAPYLRKVDLEAY 114
Query: 199 DSYEKLSLAV-DKLFRGLLAAQRDPLTAGAKDCQQEDVAISGLLDGTGEYTLVYEDYEGD 257
Y++L A+ DK F + A D ++ A++G EY YED +GD
Sbjct: 115 SGYDQLLRALQDKFFSHF------TIRKFADDERKLVDAVNG-----TEYVPTYEDKDGD 163
Query: 258 KVLVGDVPWGMFVSSVKRLRVLKTSD 283
+LVGDVPW MFV + +RLR++K+S+
Sbjct: 164 WMLVGDVPWKMFVETCQRLRLMKSSE 189
>Os06g0597000 Similar to Auxin responsive protein IAA-Re
Length = 193
Score = 88.6 bits (218), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 56/150 (37%), Positives = 74/150 (49%), Gaps = 24/150 (16%)
Query: 134 SPSTPVVGWPPVRTFRRNLATSSKASLELQNGXXXXXXXXXXXXPFIKINMDGVPIGRKI 193
SP VGWPPVR +RRN A +L +K+ +DG P RK+
Sbjct: 57 SPKARAVGWPPVRAYRRNALREDSARAKL-----------------VKVAVDGAPYLRKV 99
Query: 194 DLNAFDSYEKLSLAVDKLFRGLLAAQRDPLTAGAKDCQQEDVAISGLLDGTGEYTLVYED 253
DL A Y L A+ +F LA + G E + L+ G EY YED
Sbjct: 100 DLAAHAGYAPLLRALHGMFASCLAVR------GGGGGDGEGTKLVDLVTG-AEYVPTYED 152
Query: 254 YEGDKVLVGDVPWGMFVSSVKRLRVLKTSD 283
+GD +LVGDVPW MFV S KR+R++K+S+
Sbjct: 153 KDGDWMLVGDVPWKMFVESCKRIRLMKSSE 182
>Os02g0723400 AUX/IAA protein family protein
Length = 205
Score = 84.0 bits (206), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 40/105 (38%), Positives = 60/105 (57%), Gaps = 10/105 (9%)
Query: 179 FIKINMDGVPIGRKIDLNAFDSYEKLSLAVDKLFRGLLAAQRDPLTAGAKDCQQEDVAIS 238
F+K+ M+GVPIGRK+DL D Y+ L + +FR + C ++ A+
Sbjct: 105 FVKVYMEGVPIGRKLDLLPLDGYKGLVARLASMFRASITYHH---------CHRQ-FAVV 154
Query: 239 GLLDGTGEYTLVYEDYEGDKVLVGDVPWGMFVSSVKRLRVLKTSD 283
G+ + L YED EGD ++ GDVPW +F++SVKRLR+ + D
Sbjct: 155 GMKTNKVHHVLTYEDQEGDWMMAGDVPWELFLTSVKRLRIARADD 199
>Os12g0601400 Similar to Auxin-responsive protein (Aux/IAA) (Fragment)
Length = 197
Score = 81.3 bits (199), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 48/152 (31%), Positives = 78/152 (51%), Gaps = 24/152 (15%)
Query: 139 VVGWPPVRTFRRNLATSSKASLELQNGXXXXXXXXXXXXP-------FIKINMDGVPIGR 191
VVGWPPVR++R++ + + + + F+K++MDG P R
Sbjct: 54 VVGWPPVRSYRKSCLQPTTTTTKSKPPPAAAAAETQQKEDVAGAGGLFVKVSMDGAPYLR 113
Query: 192 KIDLNAFDSYEKLSLAVDKLFRGLLAAQRDPLTAGAKDCQQEDVAISGLLDGTGEYTLVY 251
KIDL + Y +L A++ +F + GA D A++ ++ + Y
Sbjct: 114 KIDLKVYKGYRELREALEAMFLCF--------SGGAA----ADAAVN-----PSDFAVTY 156
Query: 252 EDYEGDKVLVGDVPWGMFVSSVKRLRVLKTSD 283
ED +GD +LVGDVP+ MF+S+ KRLR++K S+
Sbjct: 157 EDKDGDLMLVGDVPFEMFISTCKRLRIMKGSE 188
>Os09g0527700 Similar to Auxin-induced protein IAA4
Length = 140
Score = 79.0 bits (193), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 42/107 (39%), Positives = 62/107 (57%), Gaps = 23/107 (21%)
Query: 179 FIKINMDGVPIGRKIDLNAFDSYEKLSLAVDKLFRGLLAAQRDPLTAGAKDCQQEDVAIS 238
F+K++MDG P RK+D+ A+ Y +L A++ +F +
Sbjct: 47 FVKVSMDGTPYLRKVDVAAYGDYLELVEALNDMFY---------------------CSTI 85
Query: 239 GLLDGTGEY--TLVYEDYEGDKVLVGDVPWGMFVSSVKRLRVLKTSD 283
GL+DG GE+ +VYED +GD +LVGDVPW MFVSS KR+RV++ +
Sbjct: 86 GLMDGYGEWEHAVVYEDGDGDWMLVGDVPWEMFVSSCKRMRVMRACE 132
>Os06g0314300 Hypothetical protein
Length = 65
Score = 76.3 bits (186), Expect = 2e-14, Method: Composition-based stats.
Identities = 40/63 (63%), Positives = 48/63 (76%), Gaps = 8/63 (12%)
Query: 218 AQRDPLTAGAKDCQQEDVAISGLLDGTGEYTLVYEDYEGDKVLVGDVPWG-MFVSSVKRL 276
A+RDPL AGA +C+QE VAISGLLDGTG DYEGD+VLVGDVPWG +F S++
Sbjct: 1 AERDPLAAGANNCRQEGVAISGLLDGTG-------DYEGDRVLVGDVPWGCVFRSTLHFQ 53
Query: 277 RVL 279
RV+
Sbjct: 54 RVV 56
>Os03g0633800 Similar to IAA6 (Fragment)
Length = 226
Score = 75.9 bits (185), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 76/166 (45%), Gaps = 43/166 (25%)
Query: 139 VVGWPPVRTFRRNL----------------ATSSKASLELQNGXXXXXXXXXXXX---PF 179
VVGWPPVR++R++ + ++K +N
Sbjct: 71 VVGWPPVRSYRKSCFQQQSAAASKSKAAVSSCNNKDEPITKNAAPAPAASSAAAANGGSL 130
Query: 180 IKINMDGVPIGRKIDLNAFDSYEKLSLAVDKLFRGLLAAQRDPLTAGAKDCQQEDVAISG 239
+K++MDG P RKIDL + Y +L A++ +F V SG
Sbjct: 131 VKVSMDGAPYLRKIDLRMYKGYRELREALEAMF----------------------VCFSG 168
Query: 240 LLDGTG--EYTLVYEDYEGDKVLVGDVPWGMFVSSVKRLRVLKTSD 283
DG E+ + Y+D +GD +LVGDVP+ MF S+ K+LR++K S+
Sbjct: 169 AADGANPSEFAITYQDKDGDLMLVGDVPFDMFTSTCKKLRIMKRSE 214
>Os03g0797800 AUX/IAA protein family protein
Length = 197
Score = 71.2 bits (173), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 49/150 (32%), Positives = 71/150 (47%), Gaps = 26/150 (17%)
Query: 139 VVGWPPVRTFRRNLATSSKASLELQNGXXXXXXXXXXXXP-----FIKINMDGVPIGRKI 193
VVGWPPV ++RR+ SS +S ++K++MDG P RK+
Sbjct: 67 VVGWPPVGSYRRSTFQSSSSSTAAAAKGKGGGETDQGRKNKGGGLYVKVSMDGAPYLRKV 126
Query: 194 DLNAFDSYEKLSLAVDKLFRGLLAAQRDPLTAGAKDCQQEDVAISGLLDGTGEYTLVYED 253
DL + Y +L A+D LF G +A A + YED
Sbjct: 127 DLRMYGGYRELRDALDALF-GCFSADASASAAHF--------------------AVAYED 165
Query: 254 YEGDKVLVGDVPWGMFVSSVKRLRVLKTSD 283
+GD +L GDVPW MF+SS K+LR+++ S+
Sbjct: 166 KDGDLMLAGDVPWDMFISSCKKLRIMRGSE 195
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.313 0.131 0.388
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,506,772
Number of extensions: 302802
Number of successful extensions: 602
Number of sequences better than 1.0e-10: 25
Number of HSP's gapped: 564
Number of HSP's successfully gapped: 25
Length of query: 300
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 200
Effective length of database: 11,814,401
Effective search space: 2362880200
Effective search space used: 2362880200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 156 (64.7 bits)