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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0228900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Auxin-responsive protein IAA18 (Indoleacetic acid-induced protein 18).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.84 (0.0546) R2 : 0.755
β1 : -8.85 (0.287) R2dD : 1.19 R2D : 0.435
β2 : 1.18 (0.135) R2dC : 0.0419 R2C : 0.0142
β3 : 2.1 (0.263) R2dE : 0.0606 R2E : -0.146
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 12.3 (1.21) R2dD*E : 0.148 R2D*E : -0.387
γ1 : -1.58 (0.112) R2dN8 : 0.144 R2N8 : -0.0137
σ : 0.977
deviance : 439.64
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_____
C
peak time of C : 4.44
E
wheather : radiation
threshold : 0.2006
memory length : 4324
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 18.2
open length of G : 10.6

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
437.32 0.983 5.84 -8.87 1.18 2.08 -1.05 12.2 -1.57 4.43 0.1955 4326 18.2 10.6
537.65 1.09 5.97 -6.57 1.12 0.692 -0.716 -- -1.48 7.11 0.1955 4326 18.2 10.6
439.64 0.977 5.84 -8.85 1.18 2.1 -- 12.3 -1.58 4.44 0.2006 4324 18.2 10.6
538.83 1.09 5.96 -6.58 1.15 0.759 -- -- -1.48 7.45 0.1955 4326 18.2 10.6
511.8 1.05 5.84 -8.82 -- 2.09 -- 12.4 -1.55 -- 0.2147 4330 18.2 10.6
550.71 1.1 5.99 -6.6 1.09 -- -1.02 -- -1.51 4.38 -- -- -- --
553.54 1.1 5.99 -6.59 1.08 -- -- -- -1.5 4.37 -- -- -- --
502.77 1.04 5.89 -6.78 -- 2.42 -- -- -1.03 -- 3.588 16569 16.9 10.3
869.27 1.37 5.8 -- 1.8 2.9 -- -- 0.3 3.68 0.01644 47520 5.25 22.9
616.53 1.16 5.99 -6.55 -- -- -- -- -1.48 -- -- -- -- --
1698.24 1.93 5.82 -- 0.959 -- -- -- -0.77 4.52 -- -- -- --
706.27 1.24 5.78 -- -- 4.72 -- -- 0.192 -- 0.004984 47520 5.33 22.7
1747.36 1.95 5.83 -- -- -- -- -- -0.749 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 443.11 radiation 1 14400 < th dose dependent rect. 19 10
3 443.51 radiation 1 14400 < th dose dependent rect. 22 7
7 451.65 atmosphere 1005 43200 < th dose independent rect. 13 1
9 452.08 atmosphere 1005 43200 < th dose independent rect. 15 9
11 452.21 atmosphere 1005 43200 < th dose independent rect. 13 11
13 452.29 atmosphere 1005 43200 < th dose independent rect. 11 6
26 452.98 atmosphere 1005 43200 > th dose independent rect. 11 6
33 453.30 atmosphere 1005 43200 > th dose independent rect. 15 8
37 453.51 atmosphere 1005 43200 > th dose independent rect. 13 1
39 453.54 atmosphere 1005 43200 > th dose independent rect. 11 12
44 453.68 radiation 1 4320 < th dose dependent rect. 18 7
46 453.74 radiation 1 4320 < th dose dependent rect. 18 3
47 453.74 radiation 1 4320 < th dose dependent rect. 18 5
52 453.77 radiation 1 4320 < th dose dependent rect. 18 23
60 453.92 radiation 1 4320 < th dose dependent rect. 18 21
72 454.13 radiation 1 14400 < th dose independent rect. 18 11
79 454.31 radiation 1 4320 < th dose dependent rect. 18 17
88 454.49 radiation 1 4320 < th dose dependent rect. 18 19
93 454.53 atmosphere 1005 43200 < th dose independent rect. 15 1
94 454.55 radiation 1 14400 < th dose independent rect. 18 7
96 454.56 radiation 1 14400 < th dose independent rect. 18 5
115 454.79 atmosphere 1005 43200 > th dose independent rect. 19 1
143 455.20 atmosphere 1005 43200 < th dose independent rect. 18 2
148 455.34 atmosphere 1005 43200 < th dose independent sin 18 NA
158 455.62 temperature 25 14400 > th dose independent rect. 11 1
172 455.89 atmosphere 1005 43200 > th dose independent sin 18 NA
174 455.90 humidity 90 14400 > th dose dependent rect. 1 17
177 456.04 atmosphere 1005 43200 > th dose independent rect. 15 2
190 456.19 temperature 25 14400 < th dose independent rect. 11 1
207 456.53 radiation 1 14400 < th dose dependent rect. 3 2
259 457.25 humidity 80 43200 > th dose independent rect. 12 2
291 457.88 radiation 1 14400 < th dose dependent rect. 6 23
297 458.02 radiation 1 14400 > th dose independent rect. 18 1
317 458.29 humidity 90 14400 > th dose dependent sin 3 NA
326 458.56 humidity 80 43200 > th dose dependent rect. 10 1
332 458.62 radiation 1 14400 < th dose dependent rect. 6 20
353 458.94 humidity 90 14400 < th dose independent rect. 24 17
364 459.05 humidity 90 14400 > th dose independent rect. 6 1
378 459.17 humidity 90 14400 > th dose dependent rect. 5 3
381 459.20 humidity 90 14400 > th dose dependent rect. 5 11
389 459.33 humidity 90 14400 > th dose independent rect. 23 19
393 459.36 humidity 90 14400 > th dose independent rect. 24 17
430 459.86 humidity 90 14400 > th dose independent rect. 24 11
435 459.88 humidity 90 14400 > th dose independent rect. 24 13
452 460.09 temperature 30 14400 < th dose dependent rect. 11 1
464 460.23 temperature 25 14400 > th dose independent rect. 24 14
466 460.24 humidity 90 43200 < th dose independent rect. 24 1
494 460.71 temperature 20 14400 > th dose independent rect. 24 1
498 460.73 humidity 90 14400 < th dose independent rect. 24 10
506 460.80 temperature 25 14400 > th dose independent rect. 24 17
507 460.81 radiation 30 14400 > th dose independent rect. 15 2
538 460.92 humidity 90 14400 > th dose independent rect. 21 11
545 460.96 temperature 25 14400 > th dose independent rect. 8 4
551 460.99 temperature 30 14400 < th dose dependent rect. 15 1
563 461.06 humidity 90 14400 < th dose independent rect. 19 12
566 461.08 radiation 1 14400 > th dose independent rect. 18 21
570 461.10 radiation 1 14400 < th dose dependent sin 1 NA
591 461.13 humidity 90 14400 < th dose independent sin 10 NA
615 461.25 temperature 25 14400 < th dose independent rect. 24 14
625 461.29 temperature 30 14400 < th dose dependent rect. 11 5
630 461.31 humidity 90 14400 > th dose independent sin 8 NA
644 461.39 radiation 1 14400 < th dose dependent rect. 4 12
648 461.41 humidity 80 43200 < th dose independent rect. 12 1
650 461.41 temperature 20 14400 > th dose independent rect. 5 4
658 461.45 temperature 20 14400 > th dose dependent rect. 11 1
661 461.46 humidity 80 43200 > th dose dependent rect. 10 4
675 461.57 radiation 1 14400 < th dose independent rect. 18 21
722 461.79 humidity 90 14400 < th dose independent rect. 15 16
724 461.79 temperature 20 14400 < th dose independent rect. 23 21
727 461.81 humidity 90 43200 < th dose independent rect. 9 1
754 461.91 humidity 90 14400 > th dose dependent rect. 10 21
771 461.98 radiation 1 14400 < th dose dependent rect. 4 22
777 462.01 radiation 1 14400 < th dose dependent no NA NA
781 462.01 radiation 1 14400 < th dose dependent rect. 22 23
785 462.02 radiation 1 14400 < th dose dependent rect. 20 23
787 462.03 humidity 90 14400 < th dose independent rect. 20 7
827 462.12 temperature 25 14400 < th dose dependent rect. 6 3
837 462.14 radiation 1 14400 < th dose dependent rect. 12 23
838 462.15 temperature 20 14400 < th dose independent rect. 23 2
885 462.24 radiation 1 14400 < th dose dependent rect. 4 17
893 462.26 temperature 25 14400 > th dose independent sin 4 NA
918 462.30 humidity 90 14400 > th dose dependent rect. 6 1
925 462.32 temperature 20 14400 < th dose independent rect. 5 4
964 462.41 humidity 90 14400 > th dose independent rect. 4 4