Os05g0178600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Auxin-responsive protein (Aux/IAA) (Fragment).
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Os05g0178600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Auxin-responsive protein (Aux/IAA) (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 71.33 | 0.397 | 11.4 | 0.441 | 0.161 | -0.941 | -1.6 | 1.62 | 0.944 | 14.6 | 8.244 | 1338 | -- | -- |
| 73.5 | 0.399 | 11.5 | 0.0951 | 0.16 | -0.928 | -1.73 | -- | 0.853 | 14.6 | 14.2 | 1366 | -- | -- |
| 73.73 | 0.4 | 11.4 | 0.595 | 0.382 | -1.03 | -- | 2.72 | 0.984 | 19.2 | -1.143 | 996 | -- | -- |
| 80.08 | 0.417 | 11.5 | 0.0285 | 0.441 | -1.03 | -- | -- | 0.829 | 19.2 | 14.09 | 875 | -- | -- |
| 80.24 | 0.417 | 11.4 | 0.573 | -- | -0.978 | -- | 2.58 | 0.977 | -- | 9.111 | 1144 | -- | -- |
| 87.76 | 0.439 | 11.5 | -0.205 | 0.259 | -- | -1.69 | -- | 0.684 | 15 | -- | -- | -- | -- |
| 94.91 | 0.456 | 11.5 | -0.241 | 0.339 | -- | -- | -- | 0.675 | 17.5 | -- | -- | -- | -- |
| 85.29 | 0.43 | 11.5 | 0.0442 | -- | -0.958 | -- | -- | 0.841 | -- | 13.07 | 1285 | -- | -- |
| 79.94 | 0.416 | 11.5 | -- | 0.529 | -1.06 | -- | -- | 0.837 | 18.8 | 12.57 | 730 | -- | -- |
| 100.9 | 0.469 | 11.5 | -0.252 | -- | -- | -- | -- | 0.667 | -- | -- | -- | -- | -- |
| 96.44 | 0.459 | 11.5 | -- | 0.343 | -- | -- | -- | 0.702 | 17.4 | -- | -- | -- | -- |
| 85.34 | 0.43 | 11.5 | -- | -- | -0.939 | -- | -- | 0.833 | -- | 12.46 | 1284 | -- | -- |
| 102.58 | 0.473 | 11.5 | -- | -- | -- | -- | -- | 0.695 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 66.09 | temperature | 30 | 720 | < th | dose dependent | rect. | 4 | 14 |
| 8 | 66.73 | temperature | 30 | 720 | < th | dose dependent | sin | 1 | NA |
| 46 | 68.51 | temperature | 10 | 720 | > th | dose dependent | rect. | 14 | 20 |
| 57 | 68.87 | temperature | 10 | 1440 | > th | dose dependent | rect. | 13 | 6 |
| 84 | 69.09 | temperature | 10 | 1440 | > th | dose dependent | rect. | 15 | 1 |
| 123 | 69.28 | temperature | 30 | 1440 | < th | dose dependent | rect. | 13 | 6 |
| 221 | 69.70 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 18 |
| 246 | 69.80 | temperature | 10 | 1440 | > th | dose dependent | sin | 19 | NA |
| 251 | 69.81 | radiation | 1 | 4320 | < th | dose independent | rect. | 20 | 9 |
| 326 | 70.02 | humidity | 70 | 14400 | < th | dose dependent | rect. | 19 | 12 |
| 335 | 70.05 | temperature | 30 | 270 | < th | dose dependent | rect. | 9 | 14 |
| 342 | 70.08 | temperature | 30 | 1440 | < th | dose dependent | sin | 19 | NA |
| 413 | 70.30 | humidity | 70 | 14400 | < th | dose dependent | rect. | 19 | 3 |
| 427 | 70.32 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 16 |
| 437 | 70.35 | radiation | 30 | 14400 | < th | dose dependent | rect. | 20 | 9 |
| 467 | 70.43 | temperature | 15 | 1440 | > th | dose independent | rect. | 20 | 6 |
| 618 | 70.82 | humidity | 60 | 43200 | > th | dose independent | rect. | 16 | 4 |
| 649 | 70.87 | humidity | 60 | 43200 | > th | dose independent | rect. | 17 | 2 |
| 654 | 70.88 | humidity | 60 | 43200 | < th | dose independent | rect. | 16 | 4 |
| 666 | 70.90 | humidity | 60 | 43200 | > th | dose independent | rect. | 16 | 8 |
| 691 | 70.93 | humidity | 60 | 43200 | < th | dose independent | rect. | 15 | 9 |
| 724 | 71.00 | temperature | 25 | 720 | < th | dose independent | rect. | 5 | 10 |
| 854 | 71.19 | humidity | 80 | 720 | > th | dose independent | rect. | 8 | 14 |
| 863 | 71.20 | humidity | 60 | 43200 | < th | dose independent | rect. | 14 | 16 |
| 908 | 71.25 | humidity | 60 | 43200 | < th | dose independent | sin | 15 | NA |
| 942 | 71.29 | humidity | 60 | 43200 | > th | dose independent | rect. | 14 | 17 |
| 959 | 71.31 | humidity | 60 | 14400 | > th | dose independent | rect. | 18 | 7 |
| 968 | 71.32 | humidity | 60 | 43200 | > th | dose independent | sin | 15 | NA |
| 971 | 71.32 | humidity | 60 | 43200 | > th | dose independent | rect. | 14 | 21 |
| 972 | 71.32 | temperature | 10 | 720 | > th | dose dependent | sin | 6 | NA |
| 999 | 71.35 | humidity | 60 | 43200 | < th | dose independent | rect. | 13 | 22 |