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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0723400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : AUX/IAA protein family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.49 (0.0275) R2 : 0.00242
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0609 (0.0579) R2dN8 : 0.00313 R2N8 : 0.00242
σ : 0.518
deviance : 123.1
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
80.02 0.42 3.49 -0.39 0.574 0.34 -1.74 -2.09 0.088 3.08 39.99 1433 -- --
87.32 0.435 3.48 -0.44 0.611 0.333 -1.74 -- 0.0933 2.97 39.62 1164 -- --
88.86 0.439 3.5 -0.366 0.493 0.318 -- -2.02 0.0951 3.18 39.68 1749 -- --
96.12 0.457 3.49 -0.54 0.498 0.297 -- -- 0.0505 3.08 40 1730 -- --
101.44 0.469 3.49 -0.312 -- 0.482 -- -2.44 0.112 -- 39.81 1878 -- --
88.97 0.442 3.51 -0.564 0.569 -- -1.69 -- -0.0197 3.14 -- -- -- --
98.36 0.464 3.51 -0.528 0.564 -- -- -- -0.00989 3.25 -- -- -- --
109.13 0.487 3.46 -0.483 -- 0.408 -- -- 0.117 -- 49.67 735 -- --
102.1 0.471 3.47 -- 0.552 0.286 -- -- 0.138 3.03 30.29 1344 -- --
116.39 0.504 3.51 -0.505 -- -- -- -- 0.00494 -- -- -- -- --
105.72 0.481 3.49 -- 0.554 -- -- -- 0.049 3.25 -- -- -- --
110.18 0.489 3.52 -- -- 0.382 -- -- 0.0892 -- 2.908 1809 -- --
123.1 0.518 3.49 -- -- -- -- -- 0.0609 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 76.37 temperature 20.0 10 > th dose independent rect. 2 2
2 77.55 temperature 20.0 270 > th dose independent rect. 23 8
6 77.84 temperature 20.0 90 > th dose independent rect. 11 22
8 77.98 temperature 20.0 90 > th dose independent rect. 1 8
9 78.04 temperature 15.0 10 > th dose dependent rect. 2 2
25 78.90 temperature 20.0 90 < th dose independent rect. 19 16
27 78.93 temperature 20.0 30 > th dose independent rect. 18 15
28 78.96 radiation 10.0 720 < th dose independent rect. 15 12
33 79.01 temperature 20.0 90 > th dose independent sin 10 NA
38 79.04 radiation 10.0 720 < th dose dependent rect. 11 16
40 79.05 radiation 10.0 720 < th dose dependent rect. 13 14
43 79.07 temperature 20.0 270 < th dose independent rect. 20 13
58 79.18 temperature 20.0 90 < th dose independent sin 10 NA
62 79.22 temperature 20.0 1440 > th dose independent rect. 3 1
65 79.24 temperature 20.0 270 > th dose independent rect. 23 21
94 79.37 temperature 15.0 90 > th dose dependent rect. 1 8
128 79.52 temperature 20.0 270 > th dose dependent rect. 23 9
133 79.56 temperature 20.0 270 > th dose independent rect. 15 15
139 79.59 temperature 20.0 1440 < th dose independent rect. 3 1
141 79.59 radiation 1.0 720 > th dose dependent rect. 14 1
148 79.61 radiation 10.0 720 < th dose dependent rect. 11 8
149 79.62 temperature 20.0 90 > th dose independent rect. 12 16
152 79.62 precipitation 0.1 90 < th dose independent rect. 3 23
153 79.62 precipitation 0.1 90 < th dose dependent rect. 3 23
175 79.70 radiation 20.0 1440 < th dose independent rect. 11 22
176 79.70 radiation 40.0 1440 < th dose independent rect. 14 23
178 79.72 temperature 20.0 4320 < th dose independent rect. 22 1
189 79.75 radiation 10.0 720 < th dose independent sin 14 NA
198 79.79 temperature 20.0 4320 > th dose independent rect. 22 1
214 79.84 radiation 1.0 720 > th dose independent rect. 14 1
219 79.86 radiation 10.0 720 < th dose independent rect. 15 3
225 79.88 radiation 40.0 1440 < th dose independent sin 4 NA
230 79.89 radiation 40.0 1440 < th dose independent rect. 8 5
239 79.91 temperature 20.0 720 < th dose independent rect. 21 4
260 79.94 radiation 10.0 720 < th dose independent rect. 14 5
262 79.95 radiation 40.0 1440 < th dose independent rect. 3 10
272 79.97 radiation 40.0 1440 < th dose independent rect. 18 19
278 79.98 radiation 40.0 1440 < th dose independent rect. 20 17
290 79.99 radiation 40.0 1440 < th dose independent rect. 22 15
298 80.01 radiation 40.0 1440 < th dose independent rect. 3 20
299 80.02 radiation 40.0 1440 < th dose independent rect. 3 14
301 80.02 radiation 40.0 1440 < th dose independent rect. 3 17
310 80.03 radiation 40.0 1440 < th dose independent rect. 8 13
329 80.03 radiation 40.0 1440 < th dose independent rect. 8 21
341 80.04 radiation 40.0 1440 < th dose independent no NA NA
342 80.04 humidity 80.0 90 > th dose independent rect. 2 1
343 80.04 radiation 40.0 1440 < th dose independent rect. 8 9
367 80.04 radiation 40.0 1440 < th dose independent rect. 19 22
372 80.04 radiation 40.0 1440 < th dose independent rect. 22 23
395 80.05 radiation 40.0 1440 < th dose independent rect. 22 19
445 80.06 radiation 30.0 1440 < th dose independent rect. 14 20
490 80.09 temperature 20.0 90 > th dose independent rect. 1 23
500 80.12 temperature 20.0 90 > th dose independent rect. 1 21
501 80.12 radiation 10.0 720 < th dose dependent sin 18 NA
507 80.14 radiation 30.0 1440 < th dose independent sin 12 NA
521 80.15 radiation 40.0 1440 < th dose independent rect. 12 23
528 80.17 temperature 20.0 90 > th dose independent rect. 17 11
538 80.18 temperature 20.0 720 > th dose dependent rect. 21 6
547 80.21 wind 3.0 10 < th dose dependent rect. 2 2
557 80.24 atmosphere 995.0 90 > th dose independent rect. 3 23
561 80.25 radiation 10.0 1440 > th dose dependent rect. 15 22
562 80.26 precipitation 0.1 270 > th dose independent rect. 2 2
568 80.26 precipitation 0.1 270 > th dose dependent rect. 2 2
588 80.29 temperature 25.0 720 < th dose dependent rect. 22 3
612 80.34 wind 9.0 90 < th dose independent rect. 2 1
613 80.34 temperature 10.0 90 > th dose independent rect. 2 1
615 80.34 temperature 30.0 90 < th dose independent rect. 2 1
616 80.34 humidity 50.0 90 > th dose independent rect. 2 1
619 80.34 atmosphere 995.0 90 > th dose independent rect. 2 1
620 80.34 atmosphere 1010.0 90 < th dose independent rect. 2 1
622 80.34 radiation 1.0 90 < th dose independent rect. 2 1
627 80.34 precipitation 0.1 90 < th dose independent rect. 2 1
628 80.34 wind 1.0 10 < th dose independent rect. 2 2
634 80.34 temperature 10.0 90 > th dose independent rect. 3 23
635 80.34 radiation 1.0 90 < th dose dependent rect. 2 1
640 80.34 precipitation 0.1 90 < th dose dependent rect. 2 1
647 80.35 radiation 10.0 1440 > th dose dependent rect. 11 23
648 80.36 temperature 20.0 720 < th dose independent rect. 23 1
659 80.37 humidity 50.0 90 > th dose dependent rect. 2 1
660 80.38 radiation 20.0 1440 < th dose independent rect. 11 2
663 80.38 radiation 40.0 720 < th dose dependent rect. 11 17
679 80.41 radiation 20.0 1440 < th dose dependent rect. 11 2
683 80.42 radiation 1.0 720 > th dose dependent rect. 14 17
703 80.46 radiation 10.0 1440 > th dose dependent rect. 7 6
722 80.47 radiation 1.0 1440 > th dose dependent rect. 11 2
726 80.48 temperature 20.0 1440 > th dose independent rect. 1 6
763 80.51 radiation 10.0 720 < th dose independent rect. 14 8
789 80.53 radiation 10.0 1440 > th dose dependent sin 5 NA
800 80.54 radiation 40.0 1440 < th dose dependent rect. 11 2
811 80.55 radiation 30.0 1440 > th dose dependent rect. 12 23
812 80.55 radiation 40.0 1440 < th dose dependent rect. 11 23
832 80.57 atmosphere 1015.0 90 < th dose dependent rect. 2 1
837 80.58 temperature 20.0 30 > th dose independent rect. 21 12
845 80.59 temperature 20.0 1440 > th dose independent rect. 5 1
846 80.59 temperature 20.0 1440 < th dose independent rect. 5 1
861 80.60 radiation 20.0 1440 < th dose independent rect. 11 12
864 80.60 radiation 1.0 720 > th dose dependent sin 13 NA
866 80.61 temperature 20.0 1440 < th dose independent rect. 2 5
868 80.61 radiation 20.0 1440 < th dose independent rect. 11 9
879 80.61 radiation 20.0 1440 > th dose dependent sin 12 NA
885 80.62 radiation 20.0 1440 < th dose independent rect. 11 7
894 80.63 temperature 20.0 1440 > th dose independent rect. 22 9
939 80.65 radiation 1.0 1440 > th dose dependent rect. 7 11