Os02g0817600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : AUX/IAA protein family protein.
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Os02g0817600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : AUX/IAA protein family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 45.78 | 0.318 | 13.7 | -0.00314 | 0.639 | -0.928 | 1.41 | 2.56 | 0.098 | 1.36 | 24.9 | 878 | -- | -- |
| 55.84 | 0.348 | 13.6 | 0.764 | 0.725 | -0.732 | 1.23 | -- | 0.363 | 0.999 | 24.6 | 890 | -- | -- |
| 51.94 | 0.336 | 13.7 | 0.168 | 0.656 | -0.833 | -- | 1.69 | 0.145 | 1.01 | 24.5 | 809 | -- | -- |
| 54.07 | 0.342 | 13.6 | 0.781 | 1.02 | -0.672 | -- | -- | 0.471 | 0.472 | 21.7 | 293 | -- | -- |
| 75.02 | 0.403 | 13.7 | -0.115 | -- | -1.23 | -- | 2.54 | -0.00788 | -- | 24.9 | 936 | -- | -- |
| 74.96 | 0.406 | 13.6 | 0.991 | 0.941 | -- | 0.718 | -- | 0.628 | 0.435 | -- | -- | -- | -- |
| 77.08 | 0.411 | 13.6 | 0.964 | 0.939 | -- | -- | -- | 0.625 | 0.263 | -- | -- | -- | -- |
| 83.46 | 0.425 | 13.7 | 0.592 | -- | -1.17 | -- | -- | 0.197 | -- | 24.73 | 937 | -- | -- |
| 55.01 | 0.345 | 13.6 | -- | 0.871 | -1.11 | -- | -- | 0.281 | 0.356 | 21.1 | 7491 | -- | -- |
| 132.51 | 0.538 | 13.6 | 0.995 | -- | -- | -- | -- | 0.639 | -- | -- | -- | -- | -- |
| 101.6 | 0.471 | 13.6 | -- | 0.952 | -- | -- | -- | 0.518 | 0.317 | -- | -- | -- | -- |
| 92.92 | 0.449 | 13.7 | -- | -- | -1.24 | -- | -- | 0.11 | -- | 24.71 | 939 | -- | -- |
| 158.64 | 0.588 | 13.6 | -- | -- | -- | -- | -- | 0.529 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 44.34 | temperature | 30.0 | 270 | < th | dose dependent | sin | 10 | NA |
| 2 | 44.62 | temperature | 30.0 | 90 | < th | dose dependent | sin | 8 | NA |
| 7 | 45.37 | humidity | 70.0 | 43200 | < th | dose dependent | rect. | 8 | 2 |
| 20 | 46.03 | humidity | 60.0 | 43200 | < th | dose independent | rect. | 2 | 10 |
| 22 | 46.09 | humidity | 60.0 | 43200 | > th | dose independent | rect. | 2 | 10 |
| 44 | 46.39 | humidity | 60.0 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 46 | 46.41 | humidity | 60.0 | 43200 | > th | dose independent | rect. | 6 | 5 |
| 47 | 46.41 | temperature | 10.0 | 270 | > th | dose dependent | sin | 11 | NA |
| 52 | 46.46 | humidity | 70.0 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 58 | 46.56 | humidity | 60.0 | 43200 | < th | dose dependent | sin | 3 | NA |
| 62 | 46.58 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 15 | 15 |
| 63 | 46.59 | humidity | 60.0 | 43200 | < th | dose independent | rect. | 8 | 3 |
| 67 | 46.61 | humidity | 60.0 | 43200 | < th | dose dependent | rect. | 8 | 8 |
| 69 | 46.62 | humidity | 60.0 | 43200 | < th | dose dependent | rect. | 9 | 5 |
| 70 | 46.62 | humidity | 60.0 | 43200 | < th | dose dependent | rect. | 6 | 10 |
| 83 | 46.68 | temperature | 30.0 | 720 | < th | dose dependent | sin | 14 | NA |
| 128 | 46.85 | temperature | 25.0 | 720 | < th | dose independent | rect. | 14 | 22 |
| 166 | 46.96 | humidity | 60.0 | 43200 | < th | dose dependent | rect. | 15 | 22 |
| 248 | 47.20 | humidity | 50.0 | 43200 | > th | dose independent | rect. | 15 | 1 |
| 271 | 47.23 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 21 | 22 |
| 310 | 47.30 | humidity | 60.0 | 43200 | < th | dose dependent | rect. | 6 | 21 |
| 316 | 47.31 | humidity | 60.0 | 43200 | < th | dose dependent | rect. | 8 | 19 |
| 331 | 47.31 | humidity | 60.0 | 43200 | < th | dose dependent | rect. | 8 | 23 |
| 332 | 47.32 | humidity | 60.0 | 43200 | < th | dose dependent | no | NA | NA |
| 354 | 47.34 | radiation | 20.0 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 369 | 47.38 | radiation | 20.0 | 43200 | < th | dose independent | rect. | 19 | 15 |
| 394 | 47.42 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 17 | 1 |
| 400 | 47.43 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 401 | 47.43 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 9 | 1 |
| 402 | 47.43 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 8 | 2 |
| 403 | 47.43 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 8 | 2 |
| 406 | 47.43 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 9 | 1 |
| 407 | 47.43 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 9 | 1 |
| 458 | 47.62 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 21 | 13 |
| 462 | 47.63 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 11 | 18 |
| 467 | 47.66 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 17 | 2 |
| 499 | 47.71 | humidity | 60.0 | 43200 | < th | dose independent | sin | 8 | NA |
| 500 | 47.71 | radiation | 20.0 | 43200 | < th | dose independent | sin | 10 | NA |
| 509 | 47.74 | radiation | 40.0 | 43200 | < th | dose independent | rect. | 9 | 2 |
| 541 | 47.86 | temperature | 25.0 | 720 | < th | dose independent | rect. | 10 | 22 |
| 555 | 47.90 | radiation | 1.0 | 43200 | > th | dose dependent | rect. | 6 | 1 |
| 556 | 47.90 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 9 | 23 |
| 678 | 48.05 | temperature | 20.0 | 720 | > th | dose dependent | sin | 16 | NA |
| 731 | 48.11 | radiation | 10.0 | 43200 | < th | dose independent | rect. | 12 | 1 |
| 751 | 48.12 | radiation | 20.0 | 43200 | < th | dose dependent | rect. | 6 | 1 |
| 807 | 48.16 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 15 | 20 |
| 845 | 48.19 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 23 | 3 |
| 888 | 48.24 | humidity | 60.0 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 908 | 48.27 | temperature | 25.0 | 720 | > th | dose independent | rect. | 13 | 23 |
| 934 | 48.30 | humidity | 50.0 | 43200 | > th | dose independent | rect. | 14 | 22 |
| 946 | 48.33 | temperature | 25.0 | 720 | < th | dose independent | sin | 16 | NA |
| 976 | 48.34 | temperature | 25.0 | 720 | > th | dose independent | rect. | 15 | 23 |
| 977 | 48.34 | temperature | 25.0 | 720 | < th | dose independent | rect. | 7 | 23 |
| 983 | 48.35 | wind | 5.0 | 43200 | > th | dose dependent | rect. | 14 | 2 |
| 994 | 48.37 | humidity | 50.0 | 43200 | < th | dose independent | rect. | 15 | 1 |