Os05g0523300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to IAA8 (Fragment).
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Os05g0523300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to IAA8 (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 237.16 | 0.724 | 5.2 | -2.08 | 2.81 | -2.67 | -1.31 | 4.6 | -0.465 | 1.07 | 25.57 | 3560 | -- | -- |
| 241.77 | 0.724 | 5.32 | -3.1 | 2.79 | -2.14 | -1.17 | -- | -0.636 | 1.08 | 25.21 | 3512 | -- | -- |
| 236.76 | 0.717 | 5.19 | -2.22 | 2.92 | -2.35 | -- | 3.19 | -0.365 | 1.06 | 25.4 | 2525 | -- | -- |
| 239.05 | 0.72 | 5.3 | -3.05 | 2.91 | -2.02 | -- | -- | -0.547 | 1.08 | 25.23 | 2515 | -- | -- |
| 532.29 | 1.08 | 5.16 | -2.42 | -- | -3.78 | -- | 7.3 | -0.315 | -- | 25.4 | 2525 | -- | -- |
| 376.19 | 0.909 | 5.34 | -3.76 | 2.59 | -- | -1.48 | -- | -0.742 | 1.23 | -- | -- | -- | -- |
| 385.18 | 0.919 | 5.33 | -3.71 | 2.59 | -- | -- | -- | -0.734 | 1.19 | -- | -- | -- | -- |
| 480.63 | 1.03 | 5.15 | -2.76 | -- | -4.7 | -- | -- | -0.0554 | -- | -9.24 | 8940 | -- | -- |
| 278.65 | 0.777 | 4.91 | -- | 2.54 | -4.05 | -- | -- | 1.03 | 1.09 | 6.204 | 15009 | -- | -- |
| 799.29 | 1.32 | 5.29 | -3.61 | -- | -- | -- | -- | -0.681 | -- | -- | -- | -- | -- |
| 748.34 | 1.28 | 5.24 | -- | 2.52 | -- | -- | -- | -0.32 | 1.13 | -- | -- | -- | -- |
| 669.44 | 1.21 | 5.06 | -- | -- | -5.57 | -- | -- | 0.348 | -- | -38.76 | 14701 | -- | -- |
| 1143.51 | 1.58 | 5.2 | -- | -- | -- | -- | -- | -0.28 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 221.25 | temperature | 25 | 14400 | > th | dose independent | rect. | 23 | 14 |
| 9 | 221.56 | temperature | 25 | 14400 | < th | dose independent | rect. | 24 | 13 |
| 11 | 221.69 | temperature | 25 | 14400 | < th | dose independent | rect. | 1 | 11 |
| 28 | 222.23 | temperature | 25 | 14400 | > th | dose independent | rect. | 19 | 19 |
| 38 | 222.52 | temperature | 25 | 14400 | > th | dose independent | sin | 6 | NA |
| 47 | 222.64 | temperature | 25 | 14400 | > th | dose independent | rect. | 10 | 20 |
| 67 | 222.97 | temperature | 25 | 14400 | < th | dose independent | rect. | 20 | 18 |
| 77 | 223.08 | temperature | 25 | 14400 | < th | dose independent | sin | 5 | NA |
| 95 | 223.20 | temperature | 25 | 14400 | > th | dose dependent | rect. | 15 | 1 |
| 106 | 223.34 | temperature | 25 | 14400 | > th | dose independent | rect. | 23 | 22 |
| 130 | 223.56 | temperature | 25 | 14400 | < th | dose independent | rect. | 10 | 20 |
| 148 | 223.67 | temperature | 25 | 14400 | > th | dose independent | no | NA | NA |
| 171 | 223.83 | temperature | 25 | 14400 | < th | dose independent | rect. | 23 | 22 |
| 190 | 223.96 | temperature | 25 | 14400 | > th | dose independent | rect. | 4 | 23 |
| 195 | 224.00 | temperature | 25 | 14400 | > th | dose independent | rect. | 2 | 23 |
| 241 | 224.29 | temperature | 25 | 14400 | < th | dose independent | no | NA | NA |
| 247 | 224.33 | temperature | 20 | 14400 | > th | dose dependent | rect. | 22 | 1 |
| 266 | 224.44 | temperature | 25 | 14400 | > th | dose dependent | rect. | 11 | 7 |
| 282 | 224.52 | temperature | 25 | 14400 | < th | dose independent | rect. | 4 | 23 |
| 300 | 224.62 | temperature | 25 | 14400 | > th | dose dependent | rect. | 11 | 19 |
| 352 | 224.90 | temperature | 25 | 14400 | > th | dose independent | sin | 15 | NA |
| 363 | 224.92 | temperature | 25 | 14400 | > th | dose dependent | rect. | 11 | 1 |
| 440 | 225.29 | temperature | 25 | 14400 | < th | dose independent | rect. | 7 | 5 |
| 473 | 225.43 | radiation | 1 | 4320 | > th | dose independent | rect. | 18 | 11 |
| 491 | 225.50 | temperature | 25 | 14400 | > th | dose independent | rect. | 7 | 5 |
| 502 | 225.54 | temperature | 25 | 14400 | > th | dose dependent | sin | 18 | NA |
| 519 | 225.62 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 11 |
| 557 | 225.83 | temperature | 25 | 14400 | < th | dose independent | sin | 15 | NA |
| 651 | 226.30 | temperature | 25 | 14400 | > th | dose dependent | rect. | 22 | 20 |
| 679 | 226.40 | temperature | 30 | 14400 | < th | dose dependent | rect. | 22 | 1 |
| 689 | 226.45 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 7 |
| 698 | 226.48 | temperature | 25 | 14400 | > th | dose independent | rect. | 19 | 1 |
| 702 | 226.49 | temperature | 10 | 14400 | > th | dose dependent | rect. | 22 | 1 |
| 746 | 226.67 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 3 |
| 750 | 226.68 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 5 |
| 858 | 226.90 | temperature | 25 | 14400 | > th | dose dependent | no | NA | NA |
| 867 | 226.92 | temperature | 25 | 14400 | > th | dose dependent | rect. | 1 | 23 |
| 970 | 227.18 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 992 | 227.19 | temperature | 20 | 14400 | > th | dose dependent | rect. | 15 | 21 |
| 996 | 227.21 | temperature | 20 | 14400 | > th | dose dependent | rect. | 17 | 19 |