Os12g0601400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Auxin-responsive protein (Aux/IAA) (Fragment).
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Os12g0601400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Auxin-responsive protein (Aux/IAA) (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 209.28 | 0.68 | 7.75 | -5.03 | 2.44 | 1.42 | -0.528 | 0.687 | -0.277 | 9.92 | 42.63 | 73 | -- | -- |
| 209.89 | 0.675 | 7.75 | -5.03 | 2.45 | 1.38 | -0.966 | -- | -0.275 | 9.94 | 40 | 72 | -- | -- |
| 209.78 | 0.675 | 7.75 | -5.04 | 2.44 | 1.44 | -- | 1.16 | -0.28 | 9.91 | 44.18 | 72 | -- | -- |
| 213.37 | 0.68 | 7.75 | -5.05 | 2.48 | 1.36 | -- | -- | -0.275 | 9.97 | 36.46 | 76 | -- | -- |
| 267.02 | 0.761 | 7.87 | -4.83 | -- | 2.52 | -- | -0.245 | -0.113 | -- | 8.731 | 970 | -- | -- |
| 241.76 | 0.729 | 7.79 | -5.08 | 1.8 | -- | -0.784 | -- | -0.361 | 8.56 | -- | -- | -- | -- |
| 243.71 | 0.731 | 7.79 | -5.1 | 1.81 | -- | -- | -- | -0.361 | 8.5 | -- | -- | -- | -- |
| 263.96 | 0.757 | 7.79 | -4.95 | -- | 2.57 | -- | -- | -0.143 | -- | 8.149 | 972 | -- | -- |
| 877.56 | 1.38 | 7.62 | -- | 2.74 | 1.63 | -- | -- | 0.29 | 10.6 | 25.84 | 126 | -- | -- |
| 426.22 | 0.965 | 7.83 | -5.1 | -- | -- | -- | -- | -0.344 | -- | -- | -- | -- | -- |
| 930 | 1.43 | 7.66 | -- | 1.79 | -- | -- | -- | 0.207 | 8.71 | -- | -- | -- | -- |
| 912.7 | 1.41 | 7.65 | -- | -- | 2.49 | -- | -- | 0.485 | -- | 24.39 | 960 | -- | -- |
| 1110.99 | 1.56 | 7.71 | -- | -- | -- | -- | -- | 0.221 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 203.55 | radiation | 40 | 270 | < th | dose dependent | rect. | 1 | 12 |
| 2 | 203.75 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 11 | 1 |
| 9 | 204.60 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 11 | 3 |
| 19 | 205.93 | humidity | 90 | 14400 | < th | dose independent | rect. | 24 | 1 |
| 32 | 206.63 | radiation | 30 | 270 | < th | dose dependent | sin | 5 | NA |
| 36 | 206.78 | radiation | 40 | 90 | < th | dose dependent | rect. | 3 | 10 |
| 42 | 207.09 | radiation | 20 | 270 | < th | dose independent | rect. | 1 | 12 |
| 43 | 207.10 | atmosphere | 1000 | 30 | > th | dose independent | rect. | 4 | 15 |
| 49 | 207.36 | radiation | 20 | 270 | < th | dose independent | rect. | 1 | 14 |
| 72 | 208.02 | radiation | 1 | 14400 | < th | dose dependent | rect. | 19 | 10 |
| 76 | 208.10 | radiation | 20 | 90 | < th | dose independent | rect. | 4 | 15 |
| 85 | 208.22 | radiation | 10 | 270 | < th | dose independent | rect. | 1 | 16 |
| 95 | 208.40 | radiation | 20 | 90 | < th | dose independent | rect. | 3 | 20 |
| 105 | 208.54 | radiation | 40 | 90 | < th | dose dependent | rect. | 4 | 15 |
| 107 | 208.58 | radiation | 20 | 90 | < th | dose independent | rect. | 3 | 10 |
| 125 | 208.77 | temperature | 15 | 30 | > th | dose dependent | rect. | 7 | 21 |
| 138 | 208.90 | radiation | 40 | 90 | < th | dose dependent | rect. | 1 | 23 |
| 156 | 209.10 | radiation | 20 | 90 | < th | dose independent | rect. | 3 | 12 |
| 157 | 209.10 | radiation | 20 | 90 | < th | dose independent | rect. | 1 | 23 |
| 166 | 209.21 | radiation | 40 | 90 | < th | dose dependent | rect. | 11 | 23 |
| 194 | 209.62 | radiation | 40 | 90 | < th | dose dependent | no | NA | NA |
| 197 | 209.63 | radiation | 40 | 90 | < th | dose dependent | rect. | 15 | 23 |
| 213 | 209.83 | radiation | 1 | 90 | > th | dose dependent | rect. | 6 | 11 |
| 228 | 209.96 | radiation | 10 | 270 | < th | dose independent | sin | 5 | NA |
| 237 | 210.08 | atmosphere | 1005 | 14400 | < th | dose independent | sin | 20 | NA |
| 241 | 210.09 | humidity | 90 | 14400 | < th | dose independent | rect. | 23 | 5 |
| 246 | 210.11 | humidity | 90 | 14400 | < th | dose independent | rect. | 24 | 3 |
| 264 | 210.26 | radiation | 1 | 90 | > th | dose dependent | rect. | 18 | 23 |
| 280 | 210.29 | radiation | 30 | 90 | < th | dose dependent | rect. | 20 | 23 |
| 304 | 210.39 | radiation | 1 | 90 | > th | dose dependent | sin | 3 | NA |
| 310 | 210.43 | radiation | 40 | 90 | < th | dose dependent | rect. | 13 | 23 |
| 311 | 210.44 | atmosphere | 1005 | 14400 | > th | dose independent | sin | 22 | NA |
| 315 | 210.48 | radiation | 40 | 90 | < th | dose dependent | rect. | 3 | 20 |
| 320 | 210.53 | radiation | 1 | 270 | > th | dose dependent | sin | 7 | NA |
| 338 | 210.64 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 15 | 2 |
| 344 | 210.68 | wind | 1 | 14400 | > th | dose independent | rect. | 2 | 1 |
| 346 | 210.69 | radiation | 20 | 90 | < th | dose independent | rect. | 11 | 23 |
| 370 | 210.77 | radiation | 1 | 90 | > th | dose dependent | no | NA | NA |
| 419 | 210.78 | wind | 9 | 14400 | > th | dose dependent | rect. | 13 | 1 |
| 461 | 211.05 | radiation | 20 | 90 | < th | dose independent | rect. | 15 | 23 |
| 478 | 211.09 | radiation | 20 | 90 | < th | dose independent | no | NA | NA |
| 503 | 211.17 | radiation | 20 | 90 | < th | dose independent | rect. | 20 | 23 |
| 531 | 211.37 | wind | 1 | 14400 | < th | dose independent | rect. | 2 | 1 |
| 546 | 211.48 | wind | 1 | 43200 | > th | dose independent | rect. | 9 | 2 |
| 555 | 211.51 | humidity | 90 | 14400 | > th | dose independent | rect. | 23 | 5 |
| 568 | 211.59 | atmosphere | 1000 | 30 | > th | dose independent | rect. | 4 | 19 |
| 578 | 211.63 | wind | 9 | 14400 | > th | dose dependent | rect. | 22 | 16 |
| 586 | 211.69 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 15 | 5 |
| 590 | 211.71 | wind | 1 | 14400 | < th | dose dependent | rect. | 2 | 1 |
| 617 | 211.88 | humidity | 90 | 14400 | > th | dose independent | rect. | 23 | 7 |
| 640 | 212.02 | radiation | 20 | 90 | < th | dose independent | rect. | 13 | 23 |
| 671 | 212.22 | radiation | 20 | 90 | < th | dose independent | sin | 0 | NA |
| 704 | 212.33 | radiation | 1 | 90 | > th | dose dependent | rect. | 14 | 23 |
| 753 | 212.57 | humidity | 90 | 14400 | > th | dose dependent | rect. | 5 | 1 |
| 764 | 212.62 | radiation | 40 | 90 | < th | dose dependent | rect. | 3 | 23 |
| 791 | 212.75 | radiation | 20 | 90 | < th | dose independent | rect. | 9 | 23 |
| 796 | 212.77 | radiation | 40 | 90 | < th | dose dependent | rect. | 9 | 23 |
| 797 | 212.78 | radiation | 10 | 270 | > th | dose independent | sin | 5 | NA |
| 819 | 212.84 | radiation | 30 | 90 | < th | dose dependent | rect. | 15 | 20 |
| 871 | 213.03 | humidity | 90 | 14400 | > th | dose dependent | rect. | 3 | 3 |
| 875 | 213.04 | temperature | 10 | 30 | > th | dose dependent | rect. | 9 | 19 |
| 884 | 213.07 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 10 |
| 898 | 213.14 | wind | 9 | 14400 | < th | dose independent | rect. | 13 | 1 |
| 936 | 213.23 | radiation | 20 | 90 | > th | dose independent | rect. | 7 | 10 |
| 955 | 213.26 | wind | 1 | 43200 | < th | dose independent | rect. | 9 | 2 |
| 957 | 213.26 | wind | 9 | 14400 | > th | dose dependent | rect. | 9 | 5 |
| 965 | 213.28 | radiation | 20 | 90 | < th | dose independent | rect. | 7 | 23 |
| 982 | 213.32 | radiation | 20 | 90 | > th | dose independent | no | NA | NA |