BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0601400 Os12g0601400|AK073361
(197 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os12g0601400 Similar to Auxin-responsive protein (Aux/IAA) ... 313 4e-86
Os03g0633800 Similar to IAA6 (Fragment) 191 3e-49
Os07g0182400 AUX/IAA protein family protein 149 1e-36
Os03g0742900 Aux /IAA protein 149 2e-36
Os01g0231000 Similar to Auxin-responsive protein (Aux/IAA) ... 145 2e-35
Os03g0797800 AUX/IAA protein family protein 144 3e-35
Os12g0601300 Similar to Auxin-responsive protein (Aux/IAA) ... 141 3e-34
Os03g0633500 Similar to Auxin-responsive protein (Aux/IAA) ... 134 3e-32
Os06g0335500 AUX/IAA protein family protein 134 4e-32
Os05g0559400 Similar to IAA11 (Fragment) 133 7e-32
Os01g0675700 Similar to Auxin-responsive protein IAA14 (Ind... 131 3e-31
Os01g0178500 Similar to Auxin-responsive protein (Aux/IAA) ... 120 5e-28
Os05g0178600 Similar to Auxin-responsive protein (Aux/IAA) ... 112 2e-25
Os02g0817600 AUX/IAA protein family protein 111 4e-25
Os06g0597000 Similar to Auxin responsive protein IAA-Re 110 5e-25
Os09g0527700 Similar to Auxin-induced protein IAA4 110 6e-25
Os01g0190300 Similar to Auxin-responsive protein IAA26 (Ind... 92 3e-19
Os05g0523300 Similar to IAA8 (Fragment) 91 5e-19
Os08g0109400 AUX/IAA protein family protein 87 1e-17
Os01g0741900 Similar to Auxin-responsive protein IAA26 (Ind... 85 3e-17
Os02g0228900 Similar to Auxin-responsive protein IAA18 (Ind... 85 3e-17
Os02g0723400 AUX/IAA protein family protein 75 3e-14
Os06g0166500 Similar to Auxin-responsive protein IAA20 (Ind... 67 1e-11
>Os12g0601400 Similar to Auxin-responsive protein (Aux/IAA) (Fragment)
Length = 197
Score = 313 bits (803), Expect = 4e-86, Method: Compositional matrix adjust.
Identities = 161/197 (81%), Positives = 161/197 (81%)
Query: 1 MENLKATELRLGLPGTXXXXXXXXSTPRAGSKRALAGEPDQXXXXXXXXXXXQVVGWPPV 60
MENLKATELRLGLPGT STPRAGSKRALAGEPDQ QVVGWPPV
Sbjct: 1 MENLKATELRLGLPGTEEEAAPPPSTPRAGSKRALAGEPDQAKIKPAAAAKAQVVGWPPV 60
Query: 61 RSYRKSCLQXXXXXXXXXXXXXXXXXETQQKEDVAGAGGLFVKVSMDGAPYLRKIDLKVY 120
RSYRKSCLQ ETQQKEDVAGAGGLFVKVSMDGAPYLRKIDLKVY
Sbjct: 61 RSYRKSCLQPTTTTTKSKPPPAAAAAETQQKEDVAGAGGLFVKVSMDGAPYLRKIDLKVY 120
Query: 121 KGYRELREALEAMFLCFSGGAAADAAVNPSDFAVTYEDKDGDLMLVGDVPFEMFISTCKR 180
KGYRELREALEAMFLCFSGGAAADAAVNPSDFAVTYEDKDGDLMLVGDVPFEMFISTCKR
Sbjct: 121 KGYRELREALEAMFLCFSGGAAADAAVNPSDFAVTYEDKDGDLMLVGDVPFEMFISTCKR 180
Query: 181 LRIMKGSEARGLGATRG 197
LRIMKGSEARGLGATRG
Sbjct: 181 LRIMKGSEARGLGATRG 197
>Os03g0633800 Similar to IAA6 (Fragment)
Length = 226
Score = 191 bits (484), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 119/217 (54%), Positives = 131/217 (60%), Gaps = 31/217 (14%)
Query: 4 LKATELRLGLPGTXXXXXXXXSTPRAGSKRALAGEPDQX------------XXXXXXXXX 51
+KATELRLGLPGT STPR G KRA A E +
Sbjct: 13 IKATELRLGLPGTADDLP---STPR-GKKRAAAAEDNNANAAAADDDEHDAVEAAPPVAK 68
Query: 52 XQVVGWPPVRSYRKSCLQXXXXXXXXXXXXXXXXXETQQ------------KEDVAGAGG 99
QVVGWPPVRSYRKSC Q + A GG
Sbjct: 69 AQVVGWPPVRSYRKSCFQQQSAAASKSKAAVSSCNNKDEPITKNAAPAPAASSAAAANGG 128
Query: 100 LFVKVSMDGAPYLRKIDLKVYKGYRELREALEAMFLCFSGGAAADAAVNPSDFAVTYEDK 159
VKVSMDGAPYLRKIDL++YKGYRELREALEAMF+CFSG AAD A NPS+FA+TY+DK
Sbjct: 129 SLVKVSMDGAPYLRKIDLRMYKGYRELREALEAMFVCFSG--AADGA-NPSEFAITYQDK 185
Query: 160 DGDLMLVGDVPFEMFISTCKRLRIMKGSEARGLGATR 196
DGDLMLVGDVPF+MF STCK+LRIMK SEA GLG+ R
Sbjct: 186 DGDLMLVGDVPFDMFTSTCKKLRIMKRSEATGLGSPR 222
>Os07g0182400 AUX/IAA protein family protein
Length = 219
Score = 149 bits (376), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 80/139 (57%), Positives = 97/139 (69%), Gaps = 8/139 (5%)
Query: 53 QVVGWPPVRSYRKSCLQXXXXXXXXXXXXXXXXXETQQKEDVAGAGGLFVKVSMDGAPYL 112
QVVGWPPVR+YR++ ++++ GGL+VKVSMDGAPYL
Sbjct: 88 QVVGWPPVRAYRRNTFHQAAAAAAATKKGG-----DEKQKQQQQGGGLYVKVSMDGAPYL 142
Query: 113 RKIDLKVYKGYRELREALEAMFL-CFSGGAAADAAVNPSDFAVTYEDKDGDLMLVGDVPF 171
RK+DLK+ KGYRELREAL+ +F CFS A A + FA+ YEDKDGDLMLVGDVP+
Sbjct: 143 RKVDLKMCKGYRELREALDLLFTKCFS--ATASDGCSDGQFAIAYEDKDGDLMLVGDVPW 200
Query: 172 EMFISTCKRLRIMKGSEAR 190
EMFIS+CK+LRIMKGSEAR
Sbjct: 201 EMFISSCKKLRIMKGSEAR 219
>Os03g0742900 Aux /IAA protein
Length = 236
Score = 149 bits (375), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 75/145 (51%), Positives = 92/145 (63%), Gaps = 9/145 (6%)
Query: 53 QVVGWPPVRSYRKSCLQXXXXXXXXXXXXXXXXXETQQKEDVAGAGG----LFVKVSMDG 108
Q VGWPPVRS+R++ + + QQ++ A A G FVKVSMDG
Sbjct: 86 QAVGWPPVRSFRRNIM-----TVQSVKSKKEEEADKQQQQPAANASGSNSSAFVKVSMDG 140
Query: 109 APYLRKIDLKVYKGYRELREALEAMFLCFSGGAAADAAVNPSDFAVTYEDKDGDLMLVGD 168
APYLRK+DLK+Y Y++L AL+ MF F+ VN SD TYEDKDGD MLVGD
Sbjct: 141 APYLRKVDLKMYNSYKDLSLALQKMFGTFTATGNNMNEVNGSDAVTTYEDKDGDWMLVGD 200
Query: 169 VPFEMFISTCKRLRIMKGSEARGLG 193
VP++MF+ +CKRLRIMKGSEA GL
Sbjct: 201 VPWQMFVESCKRLRIMKGSEAIGLA 225
>Os01g0231000 Similar to Auxin-responsive protein (Aux/IAA) (Fragment)
Length = 263
Score = 145 bits (367), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 75/147 (51%), Positives = 91/147 (61%), Gaps = 17/147 (11%)
Query: 54 VVGWPPVRSYRKSCLQXXXXXXXXXXXXXXXXXETQQKEDV---AGAGGLFVKVSMDGAP 110
VVGWPP+RSYRK+ + KEDV G G L+VKVSMDGAP
Sbjct: 124 VVGWPPIRSYRKNTMATNQI--------------KSNKEDVDAKQGQGFLYVKVSMDGAP 169
Query: 111 YLRKIDLKVYKGYRELREALEAMFLCFSGGAAADAAVNPSDFAVTYEDKDGDLMLVGDVP 170
YLRK+DLK YK Y+++ LE MF+ FS G ++ +TYEDKDGD MLVGDVP
Sbjct: 170 YLRKVDLKTYKNYKDMSLGLEKMFIGFSTGKEGAENQKDGEYVLTYEDKDGDWMLVGDVP 229
Query: 171 FEMFISTCKRLRIMKGSEARGLGATRG 197
+EMF +C+RLRIMKGS+A GL G
Sbjct: 230 WEMFTDSCRRLRIMKGSDAIGLAPRAG 256
>Os03g0797800 AUX/IAA protein family protein
Length = 197
Score = 144 bits (364), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 84/138 (60%), Positives = 98/138 (71%), Gaps = 6/138 (4%)
Query: 53 QVVGWPPVRSYRKSCLQXXXXXXXXXXXXXXXXXETQQKEDVAGAGGLFVKVSMDGAPYL 112
QVVGWPPV SYR+S Q ET Q G GGL+VKVSMDGAPYL
Sbjct: 66 QVVGWPPVGSYRRSTFQSSSSSTAAAAKGKGGG-ETDQGRKNKG-GGLYVKVSMDGAPYL 123
Query: 113 RKIDLKVYKGYRELREALEAMFLCFSGGAAADAAVNPSDFAVTYEDKDGDLMLVGDVPFE 172
RK+DL++Y GYRELR+AL+A+F CFS A+A AA AV YEDKDGDLML GDVP++
Sbjct: 124 RKVDLRMYGGYRELRDALDALFGCFSADASASAAHF----AVAYEDKDGDLMLAGDVPWD 179
Query: 173 MFISTCKRLRIMKGSEAR 190
MFIS+CK+LRIM+GSEAR
Sbjct: 180 MFISSCKKLRIMRGSEAR 197
>Os12g0601300 Similar to Auxin-responsive protein (Aux/IAA) (Fragment)
Length = 277
Score = 141 bits (356), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 80/153 (52%), Positives = 90/153 (58%), Gaps = 18/153 (11%)
Query: 53 QVVGWPPVRSYRKSCLQXXXXXXXXXXXXXXXXXETQQKEDVAGAGGLFVKVSMDGAPYL 112
QVVGWPPVRSYRK+ L K A FVKVSMDGAPYL
Sbjct: 120 QVVGWPPVRSYRKNIL------AVQADKGKDAADGGGDKSGAGAAAAAFVKVSMDGAPYL 173
Query: 113 RKIDLKVYKGYRELREALEAMFLCFSGGAAADAAVNP------------SDFAVTYEDKD 160
RK+DLK+YK Y EL +ALE MF F+ G VN S++ TYEDKD
Sbjct: 174 RKVDLKMYKSYLELSKALEKMFSSFTIGNCGSHGVNGMNESKIADLLNGSEYVPTYEDKD 233
Query: 161 GDLMLVGDVPFEMFISTCKRLRIMKGSEARGLG 193
GD MLVGDVP+EMF+ +CKRLRIMKGSEA GL
Sbjct: 234 GDWMLVGDVPWEMFVESCKRLRIMKGSEAIGLA 266
>Os03g0633500 Similar to Auxin-responsive protein (Aux/IAA) (Fragment)
Length = 241
Score = 134 bits (338), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 75/153 (49%), Positives = 90/153 (58%), Gaps = 32/153 (20%)
Query: 53 QVVGWPPVRSYRKSCLQXXXXXXXXXXXXXXXXXETQQKEDVAGAGGLFVKVSMDGAPYL 112
QVVGWPPVRS+RK+ L E A VKVSMDGAPYL
Sbjct: 100 QVVGWPPVRSFRKNVLA----------------------EKCKAAA--LVKVSMDGAPYL 135
Query: 113 RKIDLKVYKGYRELREALEAMFLCFSGGAA--------ADAAVNPSDFAVTYEDKDGDLM 164
RKID+ +YK Y EL A + MF F+ G ++ + ++ TYEDKDGD M
Sbjct: 136 RKIDVAMYKSYPELSMAFQNMFTSFTIGKCGSHQQLKESNKLRDDLEYVPTYEDKDGDWM 195
Query: 165 LVGDVPFEMFISTCKRLRIMKGSEARGLGATRG 197
LVGDVP+EMF+ +CKRLRIMKGSEA GLG T+G
Sbjct: 196 LVGDVPWEMFVESCKRLRIMKGSEAIGLGHTKG 228
>Os06g0335500 AUX/IAA protein family protein
Length = 266
Score = 134 bits (337), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 72/154 (46%), Positives = 93/154 (60%), Gaps = 23/154 (14%)
Query: 54 VVGWPPVRSYRKSCLQXXXXXXXXXXXXXXXXXETQQKEDVAGAGGLFVKVSMDGAPYLR 113
VVGWPP+RSYRK+ + + + + +G L+VKVSMDGAPYLR
Sbjct: 109 VVGWPPIRSYRKNTM--------AMSQPALKGKDDGEAKQAPASGCLYVKVSMDGAPYLR 160
Query: 114 KIDLKVYKGYRELREALEAMFLCFSGGAA-----------ADAAV----NPSDFAVTYED 158
K+DLK+YK Y+EL ALE MF CF+ G +D + N ++ +TYED
Sbjct: 161 KVDLKMYKNYKELSLALEKMFSCFTVGHGESNGKSGRDGLSDCRLMDLKNGTELVLTYED 220
Query: 159 KDGDLMLVGDVPFEMFISTCKRLRIMKGSEARGL 192
KD D MLVGDVP+ MF +C+RLRIMKGS+A GL
Sbjct: 221 KDEDWMLVGDVPWRMFTDSCRRLRIMKGSDAVGL 254
>Os05g0559400 Similar to IAA11 (Fragment)
Length = 281
Score = 133 bits (335), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 72/156 (46%), Positives = 94/156 (60%), Gaps = 29/156 (18%)
Query: 53 QVVGWPPVRSYRKSCLQXXXXXXXXXXXXXXXXXETQQKEDVAGAGGLFVKVSMDGAPYL 112
QVVGWPPVRSYRK+ L E Q K +V G +VKVSMDGAPYL
Sbjct: 127 QVVGWPPVRSYRKNTL---------AASATKTKGEDQGKSEV---GCCYVKVSMDGAPYL 174
Query: 113 RKIDLKVYKGYRELREALEAMFLCF----------------SGGAAADAAVNPSDFAVTY 156
RK+DLK Y Y +L ALE MF CF + G+ ADA + ++ +TY
Sbjct: 175 RKVDLKTYSSYEDLSLALEKMFSCFITGRSSSHKTSKRDRLTDGSRADA-LKDQEYVLTY 233
Query: 157 EDKDGDLMLVGDVPFEMFISTCKRLRIMKGSEARGL 192
EDKD D MLVGD+P+++F ++C++LRIM+GS+A G+
Sbjct: 234 EDKDADWMLVGDLPWDLFTTSCRKLRIMRGSDAAGM 269
>Os01g0675700 Similar to Auxin-responsive protein IAA14 (Indoleacetic
acid-induced protein 14) (SOLITARY-ROOT protein)
Length = 271
Score = 131 bits (329), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 68/156 (43%), Positives = 93/156 (59%), Gaps = 29/156 (18%)
Query: 53 QVVGWPPVRSYRKSCLQXXXXXXXXXXXXXXXXXETQQKEDVAGAGGLFVKVSMDGAPYL 112
QVVGWPPVR+YRK+ L + + A G L+VKVSMDGAPYL
Sbjct: 117 QVVGWPPVRNYRKNTLAASASKGKG------------EDKGTAEGGPLYVKVSMDGAPYL 164
Query: 113 RKIDLKVYKGYRELREALEAMFLCF----------------SGGAAADAAVNPSDFAVTY 156
RK+DLK+Y Y +L ALE MF CF + G+ AD A+ ++ +TY
Sbjct: 165 RKVDLKMYSSYEDLSMALEKMFSCFITGQSGLRKSSNRDRLTNGSKAD-ALQDQEYVLTY 223
Query: 157 EDKDGDLMLVGDVPFEMFISTCKRLRIMKGSEARGL 192
EDKD D MLVGD+P+++F + C++L+IM+GS+A G+
Sbjct: 224 EDKDADWMLVGDLPWDLFTTICRKLKIMRGSDAAGI 259
>Os01g0178500 Similar to Auxin-responsive protein (Aux/IAA) (Fragment)
Length = 199
Score = 120 bits (302), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 67/148 (45%), Positives = 85/148 (57%), Gaps = 36/148 (24%)
Query: 53 QVVGWPPVRSYRKSCLQXXXXXXXXXXXXXXXXXETQQKEDVAGAGGLFVKVSMDGAPYL 112
+VVGWPPVRS+RK+ L FVKV++DGAPYL
Sbjct: 76 RVVGWPPVRSFRKNAL-----------------------------AAKFVKVAVDGAPYL 106
Query: 113 RKIDLKVYKGYRELREALEAMFLC-FSGGAAADA------AVNPSDFAVTYEDKDGDLML 165
RK+DL+ Y GY +L AL+ F F+ AD AVN +++ TYEDKDGD ML
Sbjct: 107 RKVDLEAYSGYDQLLRALQDKFFSHFTIRKFADDERKLVDAVNGTEYVPTYEDKDGDWML 166
Query: 166 VGDVPFEMFISTCKRLRIMKGSEARGLG 193
VGDVP++MF+ TC+RLR+MK SEA L
Sbjct: 167 VGDVPWKMFVETCQRLRLMKSSEAVNLA 194
>Os05g0178600 Similar to Auxin-responsive protein (Aux/IAA) (Fragment)
Length = 212
Score = 112 bits (279), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 62/148 (41%), Positives = 86/148 (58%), Gaps = 27/148 (18%)
Query: 53 QVVGWPPVRSYRKSCLQXXXXXXXXXXXXXXXXXETQQKEDVAGAGGLFVKVSMDGAPYL 112
+VVGWPPVR++RK+ + + FVKV++DGAPYL
Sbjct: 81 RVVGWPPVRAFRKNA--------------------LAALAAASSSKAKFVKVAVDGAPYL 120
Query: 113 RKIDLKVYKGYRELREALEAMFLC-FSGGAAADA------AVNPSDFAVTYEDKDGDLML 165
RK+DL+ Y+GY +L AL+ F F+ + AV+ +++ TYEDKDGD ML
Sbjct: 121 RKVDLEAYRGYDQLLAALQDKFFSHFTIRKLGNEEMKLVDAVSGNEYVPTYEDKDGDWML 180
Query: 166 VGDVPFEMFISTCKRLRIMKGSEARGLG 193
VGDVP++MF+ TC+RLR+MK SEA L
Sbjct: 181 VGDVPWKMFVETCQRLRLMKSSEAVNLA 208
>Os02g0817600 AUX/IAA protein family protein
Length = 280
Score = 111 bits (277), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 65/155 (41%), Positives = 85/155 (54%), Gaps = 17/155 (10%)
Query: 54 VVGWPPVRSYRKSCL--QXXXXXXXXXXXXXXXXXETQQKEDVAG------AGGLFVKVS 105
VVGWPP+R +R + L Q QK+ G AG +VKV+
Sbjct: 111 VVGWPPIRQFRMNSLFNQAKENTSETDTKKTATNESDVQKDKEEGEKKGRVAG--WVKVN 168
Query: 106 MDGAPYLRKIDLKVYKGYRELREALEAMFLCFSGGAAADAAV-------NPSDFAVTYED 158
MDG RK+DL ++ Y+ L ALE MF S G A N +++ +TYED
Sbjct: 169 MDGEVIGRKVDLNAHRSYKTLALALELMFTKPSIGLCASHNTNSLKLLDNSAEYQLTYED 228
Query: 159 KDGDLMLVGDVPFEMFISTCKRLRIMKGSEARGLG 193
+DGD MLVGDVP+EMF+S+ KRLRIM+ S+A GLG
Sbjct: 229 RDGDWMLVGDVPWEMFVSSVKRLRIMRTSDANGLG 263
>Os06g0597000 Similar to Auxin responsive protein IAA-Re
Length = 193
Score = 110 bits (276), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 64/155 (41%), Positives = 83/155 (53%), Gaps = 34/155 (21%)
Query: 53 QVVGWPPVRSYRKSCLQXXXXXXXXXXXXXXXXXETQQKEDVAGAGGLFVKVSMDGAPYL 112
+ VGWPPVR+YR++ L +ED A A VKV++DGAPYL
Sbjct: 61 RAVGWPPVRAYRRNAL----------------------REDSARAK--LVKVAVDGAPYL 96
Query: 113 RKIDLKVYKGYRELREALEAMFL-CFSGGAAADAA---------VNPSDFAVTYEDKDGD 162
RK+DL + GY L AL MF C + V +++ TYEDKDGD
Sbjct: 97 RKVDLAAHAGYAPLLRALHGMFASCLAVRGGGGGDGEGTKLVDLVTGAEYVPTYEDKDGD 156
Query: 163 LMLVGDVPFEMFISTCKRLRIMKGSEARGLGATRG 197
MLVGDVP++MF+ +CKR+R+MK SEA L R
Sbjct: 157 WMLVGDVPWKMFVESCKRIRLMKSSEAVNLSPRRS 191
>Os09g0527700 Similar to Auxin-induced protein IAA4
Length = 140
Score = 110 bits (275), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 54/95 (56%), Positives = 65/95 (68%), Gaps = 2/95 (2%)
Query: 101 FVKVSMDGAPYLRKIDLKVYKGYRELREALEAMFLCFSGGAAADAAVNPSDFAVTYEDKD 160
FVKVSMDG PYLRK+D+ Y Y EL EAL MF C + G + AV YED D
Sbjct: 47 FVKVSMDGTPYLRKVDVAAYGDYLELVEALNDMFYCSTIGLMD--GYGEWEHAVVYEDGD 104
Query: 161 GDLMLVGDVPFEMFISTCKRLRIMKGSEARGLGAT 195
GD MLVGDVP+EMF+S+CKR+R+M+ EARGL +
Sbjct: 105 GDWMLVGDVPWEMFVSSCKRMRVMRACEARGLSSN 139
>Os01g0190300 Similar to Auxin-responsive protein IAA26 (Indoleacetic
acid-induced protein 26) (Phytochrome-associated protein
1)
Length = 238
Score = 91.7 bits (226), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 52/145 (35%), Positives = 76/145 (52%), Gaps = 13/145 (8%)
Query: 57 WPPVRSYRKSCLQXXXXXXXXXXXXXXXXXETQQK--EDVAGAGGLFVKVSMDGAPYLRK 114
WPPVRS+R++ + K +D G+FVK++MDG P RK
Sbjct: 74 WPPVRSFRRNLASSSSSSSKQAPPPPSSSPQNGDKASKDGGAEKGMFVKINMDGVPIGRK 133
Query: 115 IDLKVYKGYRELREALEAMFLCFSGGAAADAA-----------VNPSDFAVTYEDKDGDL 163
+DL Y GY +L A++ +F +A A V ++ + YED +GD
Sbjct: 134 VDLAAYGGYAQLSAAVDKLFRGLLAAQSAAADGEADAAAAGEMVGGGEYTLVYEDDEGDR 193
Query: 164 MLVGDVPFEMFISTCKRLRIMKGSE 188
MLVGDVP++MFI+T KRLR++K S+
Sbjct: 194 MLVGDVPWQMFIATAKRLRVLKSSD 218
>Os05g0523300 Similar to IAA8 (Fragment)
Length = 327
Score = 90.9 bits (224), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 52/152 (34%), Positives = 76/152 (50%), Gaps = 21/152 (13%)
Query: 54 VVGWPPVRSYRKSCLQXXXXXXXXXXXXXXXXXETQQKEDVAGAGGLFVKVSMDGAPYLR 113
VVGWPP+RS+R++ E K VK++MDG P R
Sbjct: 168 VVGWPPIRSFRRNLTNGSSFKQSPERQND----EADDKAKPICKKRPLVKINMDGIPIGR 223
Query: 114 KIDLKVYKGYRELREALEAMFLCF-----------SGGAAADAAV------NPSDFAVTY 156
K+DL++Y Y++L A+E +F F SG A+ + + + Y
Sbjct: 224 KVDLQIYDSYQKLSSAVEELFRGFLEAQKDLSCAESGEQGAEDKIFSGLLDGTGVYTLVY 283
Query: 157 EDKDGDLMLVGDVPFEMFISTCKRLRIMKGSE 188
ED DGD ML GD+P+++F+ST KRLR+M+ SE
Sbjct: 284 EDNDGDRMLAGDIPWKVFVSTVKRLRVMRRSE 315
>Os08g0109400 AUX/IAA protein family protein
Length = 246
Score = 86.7 bits (213), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/146 (34%), Positives = 76/146 (52%), Gaps = 13/146 (8%)
Query: 53 QVVGWPPVRSYRKSCLQXXXXXXXXXXXXXXXXXETQQKEDVAG-----AGGLFVKVSMD 107
Q+VGWPPVR++RK+ + A + +FVKV+++
Sbjct: 92 QLVGWPPVRAFRKNLSTPKPADADDLMNKVKLCSDEGHGSRCAAQERRSSSTMFVKVNLE 151
Query: 108 GAPYLRKIDLKVYKGYRELREALEAMFLCF--SGGAAADAAVNPSD------FAVTYEDK 159
G RKIDLK ++ Y L +AL++MF F G A D + + + + YED
Sbjct: 152 GYAVGRKIDLKAHRSYDSLSQALQSMFHGFLSDGIATRDNELQQMEEGSKKRYVLVYEDN 211
Query: 160 DGDLMLVGDVPFEMFISTCKRLRIMK 185
+GD MLVGDVP+E+FI++ KRL I +
Sbjct: 212 EGDRMLVGDVPWELFIASVKRLYIAQ 237
>Os01g0741900 Similar to Auxin-responsive protein IAA26 (Indoleacetic
acid-induced protein 26) (Phytochrome-associated protein
1)
Length = 335
Score = 85.1 bits (209), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 51/152 (33%), Positives = 72/152 (47%), Gaps = 21/152 (13%)
Query: 54 VVGWPPVRSYRKSCLQXXXXXXXXXXXXXXXXXETQQKEDVAGAGGLFVKVSMDGAPYLR 113
VVGWPP+RS+R++ K + VK++MDG P R
Sbjct: 176 VVGWPPIRSFRRNL----ASSSSSKHSPEPQNDNANAKVTLTCKKNPLVKINMDGIPIGR 231
Query: 114 KIDLKVYKGYRELREALEAMFLCF----SGGAAADAAVNPSD-------------FAVTY 156
KIDL Y Y L A++ +F F A A +D + + Y
Sbjct: 232 KIDLAAYNSYDGLSSAVKQLFHGFLQAQKDQTNAQIAQQGADDKIFYQLLDGSGEYTLVY 291
Query: 157 EDKDGDLMLVGDVPFEMFISTCKRLRIMKGSE 188
ED +GD MLVGDVP+++F+ST KRLR+++ SE
Sbjct: 292 EDSEGDRMLVGDVPWKVFVSTAKRLRVLRSSE 323
>Os02g0228900 Similar to Auxin-responsive protein IAA18 (Indoleacetic
acid-induced protein 18)
Length = 300
Score = 85.1 bits (209), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 49/152 (32%), Positives = 77/152 (50%), Gaps = 24/152 (15%)
Query: 54 VVGWPPVRSYRKSCLQXXXXXXXXXXXXXXXXXETQQKEDVAGAGGLFVKVSMDGAPYLR 113
VVGWPPVR++R++ E ++ F+K++MDG P R
Sbjct: 139 VVGWPPVRTFRRNLATSSKASLELQNGKKAAKAEEIKRAP-------FIKINMDGVPIGR 191
Query: 114 KIDLKVYKGYRELREALEAMFLCF--------SGGA----AADAAVN-----PSDFAVTY 156
KIDL + Y +L A++ +F + GA D A++ ++ + Y
Sbjct: 192 KIDLNAFDSYEKLSLAVDKLFRGLLAAQRDPLTAGAKDCQQEDVAISGLLDGTGEYTLVY 251
Query: 157 EDKDGDLMLVGDVPFEMFISTCKRLRIMKGSE 188
ED +GD +LVGDVP+ MF+S+ KRLR++K S+
Sbjct: 252 EDYEGDKVLVGDVPWGMFVSSVKRLRVLKTSD 283
>Os02g0723400 AUX/IAA protein family protein
Length = 205
Score = 75.1 bits (183), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 39/97 (40%), Positives = 54/97 (55%), Gaps = 7/97 (7%)
Query: 99 GLFVKVSMDGAPYLRKIDLKVYKGYRELREALEAMF-------LCFSGGAAADAAVNPSD 151
LFVKV M+G P RK+DL GY+ L L +MF C A N
Sbjct: 103 SLFVKVYMEGVPIGRKLDLLPLDGYKGLVARLASMFRASITYHHCHRQFAVVGMKTNKVH 162
Query: 152 FAVTYEDKDGDLMLVGDVPFEMFISTCKRLRIMKGSE 188
+TYED++GD M+ GDVP+E+F+++ KRLRI + +
Sbjct: 163 HVLTYEDQEGDWMMAGDVPWELFLTSVKRLRIARADD 199
>Os06g0166500 Similar to Auxin-responsive protein IAA20 (Indoleacetic
acid-induced protein 20)
Length = 183
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/132 (35%), Positives = 63/132 (47%), Gaps = 27/132 (20%)
Query: 53 QVVGWPPVRSYRKSCLQXXXXXXXXXXXXXXXXXETQQKEDVAGAGGLFVKVSMDGAPYL 112
++VGWPPV+ CL + G GG +VKV M+G
Sbjct: 78 KLVGWPPVK-----CLH---------------------RRRDGGCGGGYVKVKMEGLAIG 111
Query: 113 RKIDLKVYKGYRELREALEAMFLCFSGGAAADAAVNPSDFAVTYEDKDGDLMLVGDVPFE 172
RK+DL + Y EL + L MF + D +AVTYED +GD M VGDVP+E
Sbjct: 112 RKLDLSILGSYAELLDTLHLMFPSTNQEDGHDRRRR-HPYAVTYEDGEGDWMQVGDVPWE 170
Query: 173 MFISTCKRLRIM 184
F + KRL+I+
Sbjct: 171 AFAKSVKRLKIL 182
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.318 0.136 0.397
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,680,074
Number of extensions: 188860
Number of successful extensions: 428
Number of sequences better than 1.0e-10: 24
Number of HSP's gapped: 398
Number of HSP's successfully gapped: 24
Length of query: 197
Length of database: 17,035,801
Length adjustment: 96
Effective length of query: 101
Effective length of database: 12,023,257
Effective search space: 1214348957
Effective search space used: 1214348957
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 153 (63.5 bits)