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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0166500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Auxin-responsive protein IAA20 (Indoleacetic acid-induced protein 20).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.94 (0.0322) R2 : 0.0836
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.437 (0.0678) R2dN8 : 0.108 R2N8 : 0.0836
σ : 0.607
deviance : 168.96
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
158.83 0.592 2.94 -0.401 0.289 0.6 -0.0888 -0.0178 0.422 9.04 4.481 4423 -- --
158.82 0.587 2.94 -0.401 0.288 0.603 -0.0876 -- 0.423 9.06 4.472 4431 -- --
158.84 0.587 2.94 -0.403 0.288 0.602 -- -0.00951 0.424 9.11 4.475 4431 -- --
158.84 0.587 2.94 -0.404 0.288 0.605 -- -- 0.424 9.11 4.479 4431 -- --
162.22 0.593 2.93 -0.426 -- 0.678 -- 0.11 0.474 -- 4.2 5030 -- --
163.12 0.599 2.94 -0.208 0.283 -- -0.136 -- 0.412 8.84 -- -- -- --
163.18 0.598 2.94 -0.212 0.283 -- -- -- 0.412 8.91 -- -- -- --
162.23 0.593 2.93 -0.448 -- 0.682 -- -- 0.478 -- 4.2 4964 -- --
162.37 0.593 2.94 -- 0.295 0.39 -- -- 0.456 9.13 4.291 4411 -- --
167.77 0.605 2.95 -0.212 -- -- -- -- 0.414 -- -- -- -- --
164.37 0.6 2.94 -- 0.283 -- -- -- 0.435 8.96 -- -- -- --
166.24 0.6 2.93 -- -- 0.422 -- -- 0.498 -- 4.009 4964 -- --
168.96 0.607 2.94 -- -- -- -- -- 0.437 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 150.24 humidity 70.0 90 < th dose independent rect. 8 1
2 150.65 radiation 10.0 270 > th dose independent rect. 6 1
15 150.79 humidity 70.0 90 < th dose dependent rect. 8 1
17 151.81 wind 1.0 270 < th dose independent rect. 6 1
18 152.03 wind 1.0 270 < th dose dependent rect. 5 2
21 152.50 radiation 30.0 30 > th dose independent rect. 15 20
22 152.61 humidity 70.0 10 < th dose independent rect. 9 1
25 152.98 radiation 30.0 10 > th dose independent rect. 8 3
59 154.42 humidity 80.0 30 < th dose independent rect. 1 3
63 154.43 humidity 80.0 30 < th dose dependent rect. 1 3
67 154.45 humidity 80.0 30 < th dose independent rect. 1 1
70 154.45 humidity 80.0 30 < th dose dependent rect. 1 1
98 154.76 radiation 30.0 90 > th dose independent sin 12 NA
100 154.79 radiation 40.0 10 > th dose dependent rect. 10 1
198 156.03 temperature 25.0 270 > th dose dependent rect. 24 8
202 156.23 radiation 20.0 30 > th dose dependent rect. 14 21
217 156.69 humidity 70.0 10 < th dose independent rect. 14 21
219 156.75 wind 1.0 270 < th dose independent rect. 5 17
226 156.84 wind 1.0 270 < th dose independent rect. 6 13
231 156.85 wind 1.0 270 < th dose independent rect. 6 10
236 156.86 wind 1.0 1440 < th dose dependent rect. 14 2
243 156.92 wind 1.0 270 < th dose dependent rect. 5 5
260 157.06 wind 1.0 270 < th dose independent rect. 6 7
262 157.06 temperature 25.0 270 > th dose dependent rect. 7 1
281 157.37 wind 1.0 270 < th dose dependent rect. 5 17
289 157.48 wind 1.0 270 < th dose dependent rect. 5 13
292 157.49 wind 1.0 270 < th dose dependent rect. 5 11
305 157.66 radiation 20.0 30 > th dose dependent rect. 8 3
314 157.70 temperature 25.0 90 > th dose dependent rect. 20 14
316 157.73 wind 1.0 270 < th dose dependent rect. 5 9
324 157.80 wind 1.0 270 < th dose dependent rect. 5 20
325 157.81 radiation 30.0 90 < th dose independent sin 12 NA
333 157.88 wind 1.0 10 < th dose independent rect. 9 4
335 157.91 radiation 10.0 1440 > th dose independent rect. 17 14
339 157.95 wind 1.0 1440 < th dose independent rect. 14 2
347 158.00 radiation 40.0 720 > th dose independent rect. 15 1
366 158.02 humidity 70.0 10 < th dose dependent rect. 14 21
373 158.07 radiation 40.0 720 > th dose dependent rect. 15 1
390 158.09 temperature 25.0 4320 > th dose dependent rect. 7 2
408 158.15 wind 9.0 30 < th dose independent rect. 3 23
414 158.18 radiation 20.0 1440 > th dose independent rect. 15 16
431 158.24 radiation 20.0 1440 > th dose independent rect. 15 2
445 158.24 wind 1.0 10 < th dose dependent rect. 9 4
446 158.25 temperature 25.0 14400 < th dose independent rect. 6 2
447 158.26 wind 5.0 1440 < th dose dependent rect. 15 1
453 158.29 humidity 60.0 90 < th dose independent rect. 15 19
455 158.31 temperature 25.0 14400 > th dose independent rect. 7 1
471 158.36 temperature 25.0 1440 > th dose dependent rect. 4 5
506 158.46 temperature 25.0 14400 < th dose independent rect. 4 5
511 158.48 temperature 25.0 14400 > th dose independent rect. 4 5
513 158.48 radiation 20.0 4320 < th dose dependent rect. 23 1
515 158.48 humidity 80.0 1440 < th dose dependent rect. 20 13
518 158.49 temperature 25.0 270 > th dose independent rect. 24 9
525 158.51 wind 3.0 30 < th dose independent rect. 22 1
529 158.52 wind 5.0 1440 < th dose independent rect. 15 1
534 158.53 humidity 90.0 30 < th dose independent rect. 22 1
539 158.53 wind 5.0 30 < th dose dependent rect. 22 1
542 158.54 temperature 20.0 30 > th dose dependent rect. 22 1
544 158.55 atmosphere 1005.0 30 > th dose independent rect. 22 1
552 158.57 atmosphere 1005.0 30 > th dose dependent rect. 22 1
557 158.59 temperature 25.0 30 > th dose independent rect. 22 1
558 158.59 humidity 60.0 43200 < th dose independent rect. 16 1
560 158.60 wind 1.0 30 > th dose independent rect. 22 1
562 158.60 precipitation 0.1 30 < th dose independent rect. 22 1
565 158.60 precipitation 0.1 30 < th dose dependent rect. 22 1
567 158.60 humidity 70.0 90 < th dose dependent rect. 15 19
568 158.61 wind 7.0 30 < th dose independent rect. 22 1
570 158.61 temperature 10.0 30 > th dose independent rect. 22 1
572 158.61 temperature 30.0 30 < th dose independent rect. 22 1
573 158.61 humidity 50.0 30 > th dose independent rect. 22 1
576 158.61 atmosphere 995.0 30 > th dose independent rect. 22 1
577 158.61 atmosphere 1010.0 30 < th dose independent rect. 22 1
580 158.61 radiation 1.0 30 < th dose independent rect. 22 1
585 158.61 temperature 10.0 30 > th dose independent rect. 23 23
586 158.61 atmosphere 995.0 30 > th dose dependent rect. 22 1
587 158.61 radiation 1.0 30 < th dose dependent rect. 22 1
593 158.62 humidity 60.0 10 < th dose independent sin 11 NA
595 158.62 wind 9.0 1440 < th dose independent rect. 23 1
596 158.62 temperature 10.0 1440 > th dose independent rect. 23 1
599 158.62 temperature 30.0 1440 < th dose independent rect. 23 1
603 158.62 humidity 50.0 1440 > th dose independent rect. 23 1
613 158.62 atmosphere 995.0 1440 > th dose independent rect. 23 1
614 158.62 radiation 1.0 1440 < th dose independent rect. 23 1
634 158.62 temperature 10.0 1440 > th dose independent rect. 24 23
638 158.62 radiation 1.0 1440 < th dose dependent rect. 23 1
649 158.64 humidity 50.0 43200 > th dose dependent rect. 16 1
669 158.66 humidity 50.0 30 > th dose dependent rect. 22 1
673 158.67 wind 5.0 1440 < th dose independent rect. 14 3
674 158.67 humidity 90.0 30 < th dose dependent rect. 22 1
706 158.71 humidity 60.0 43200 > th dose independent rect. 16 1
710 158.72 humidity 60.0 43200 > th dose independent rect. 15 11
712 158.72 atmosphere 1015.0 30 < th dose dependent rect. 22 1
716 158.73 temperature 25.0 14400 < th dose independent rect. 19 1
730 158.75 temperature 25.0 14400 > th dose independent rect. 19 1
743 158.77 humidity 60.0 43200 < th dose independent rect. 15 11
748 158.78 humidity 60.0 43200 > th dose independent rect. 15 5
759 158.79 temperature 25.0 14400 > th dose independent rect. 18 15
760 158.79 temperature 25.0 14400 < th dose independent rect. 18 15
761 158.79 wind 1.0 720 < th dose dependent rect. 3 1
779 158.82 temperature 30.0 14400 < th dose independent rect. 15 2
800 158.83 humidity 60.0 43200 < th dose dependent rect. 16 1
807 158.84 temperature 30.0 14400 > th dose independent rect. 15 1
811 158.84 humidity 60.0 43200 < th dose independent rect. 15 5
828 158.85 humidity 60.0 43200 > th dose independent rect. 15 18
829 158.85 humidity 60.0 43200 < th dose independent rect. 15 19
831 158.85 temperature 25.0 14400 > th dose dependent rect. 18 1
845 158.87 wind 7.0 14400 > th dose dependent rect. 16 1
885 158.90 wind 1.0 1440 > th dose dependent rect. 15 1
886 158.90 temperature 25.0 14400 > th dose dependent rect. 17 3
903 158.92 temperature 25.0 14400 < th dose independent rect. 22 11
916 158.93 wind 5.0 1440 > th dose independent rect. 14 3
952 158.94 humidity 60.0 14400 < th dose dependent rect. 16 17
977 158.95 wind 1.0 30 > th dose dependent rect. 22 1
997 158.96 temperature 30.0 30 < th dose dependent rect. 22 1