BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0166500 Os06g0166500|AK102541
(183 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os06g0166500 Similar to Auxin-responsive protein IAA20 (Ind... 234 4e-62
Os02g0805100 Similar to Auxin-responsive protein IAA12 (Ind... 110 4e-25
Os03g0633500 Similar to Auxin-responsive protein (Aux/IAA) ... 80 6e-16
Os02g0817600 AUX/IAA protein family protein 80 1e-15
Os01g0231000 Similar to Auxin-responsive protein (Aux/IAA) ... 78 3e-15
Os03g0742900 Aux /IAA protein 77 8e-15
Os12g0601300 Similar to Auxin-responsive protein (Aux/IAA) ... 76 1e-14
Os01g0178500 Similar to Auxin-responsive protein (Aux/IAA) ... 76 1e-14
Os06g0597000 Similar to Auxin responsive protein IAA-Re 76 2e-14
Os09g0527700 Similar to Auxin-induced protein IAA4 75 3e-14
Os07g0182400 AUX/IAA protein family protein 75 3e-14
Os02g0723400 AUX/IAA protein family protein 74 7e-14
Os12g0601400 Similar to Auxin-responsive protein (Aux/IAA) ... 73 1e-13
Os08g0109400 AUX/IAA protein family protein 72 2e-13
Os05g0559400 Similar to IAA11 (Fragment) 71 3e-13
Os01g0675700 Similar to Auxin-responsive protein IAA14 (Ind... 70 1e-12
Os05g0178600 Similar to Auxin-responsive protein (Aux/IAA) ... 67 5e-12
Os01g0741900 Similar to Auxin-responsive protein IAA26 (Ind... 65 2e-11
Os01g0190300 Similar to Auxin-responsive protein IAA26 (Ind... 65 2e-11
Os03g0633800 Similar to IAA6 (Fragment) 65 3e-11
Os06g0335500 AUX/IAA protein family protein 65 4e-11
Os03g0797800 AUX/IAA protein family protein 64 6e-11
>Os06g0166500 Similar to Auxin-responsive protein IAA20 (Indoleacetic
acid-induced protein 20)
Length = 183
Score = 234 bits (596), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 130/157 (82%), Positives = 130/157 (82%)
Query: 27 ELDLLNSAPGSCRKRGFEEALXXXXXXXXXXXXXXXXXXXXXXXXXXXKRRKLVGWPPVK 86
ELDLLNSAPGSCRKRGFEEAL KRRKLVGWPPVK
Sbjct: 27 ELDLLNSAPGSCRKRGFEEALGGFKTDDDNDDGNGRGGDGDSDGEMGNKRRKLVGWPPVK 86
Query: 87 CLHRRRDGGCGGGYVKVKMEGLAIGRKLDLSILGSYAELLDTLHLMFPSTNQEDGHDRRR 146
CLHRRRDGGCGGGYVKVKMEGLAIGRKLDLSILGSYAELLDTLHLMFPSTNQEDGHDRRR
Sbjct: 87 CLHRRRDGGCGGGYVKVKMEGLAIGRKLDLSILGSYAELLDTLHLMFPSTNQEDGHDRRR 146
Query: 147 RHPYAVTYEDGEGDWMQVGDVPWEAFAKSVKRLKILV 183
RHPYAVTYEDGEGDWMQVGDVPWEAFAKSVKRLKILV
Sbjct: 147 RHPYAVTYEDGEGDWMQVGDVPWEAFAKSVKRLKILV 183
>Os02g0805100 Similar to Auxin-responsive protein IAA12 (Indoleacetic
acid-induced protein 12) (BODENLOS protein)
Length = 182
Score = 110 bits (276), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 62/115 (53%), Positives = 74/115 (64%), Gaps = 12/115 (10%)
Query: 75 KRRKLVGWPPVKCLHRRRDGGCGGG-YVKVKMEGLAIGRKLDLSILGSYAELLDTLHLMF 133
+++ +VGWPPV R CGG YVKVK EG AIGRK+DL++ SY EL TL MF
Sbjct: 72 RKKTVVGWPPVSSARR----ACGGANYVKVKKEGDAIGRKVDLALHSSYDELAATLARMF 127
Query: 134 PSTNQEDGHDRRRRHPY------AVTYEDGEGDWMQVGDVPWEAFAKSVKRLKIL 182
P TN G + + VTYEDG+GDWM VGDVPW+ FA+SVKRLKIL
Sbjct: 128 P-TNDHQGEKKMANDDHGDAAGPVVTYEDGDGDWMLVGDVPWDDFARSVKRLKIL 181
>Os03g0633500 Similar to Auxin-responsive protein (Aux/IAA) (Fragment)
Length = 241
Score = 80.5 bits (197), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 45/118 (38%), Positives = 65/118 (55%), Gaps = 11/118 (9%)
Query: 76 RRKLVGWPPVKCLHRR--RDGGCGGGYVKVKMEGLAIGRKLDLSILGSYAELLDTLHLMF 133
+ ++VGWPPV+ + + VKV M+G RK+D+++ SY EL MF
Sbjct: 98 KAQVVGWPPVRSFRKNVLAEKCKAAALVKVSMDGAPYLRKIDVAMYKSYPELSMAFQNMF 157
Query: 134 PS-------TNQE--DGHDRRRRHPYAVTYEDGEGDWMQVGDVPWEAFAKSVKRLKIL 182
S ++Q+ + + R Y TYED +GDWM VGDVPWE F +S KRL+I+
Sbjct: 158 TSFTIGKCGSHQQLKESNKLRDDLEYVPTYEDKDGDWMLVGDVPWEMFVESCKRLRIM 215
>Os02g0817600 AUX/IAA protein family protein
Length = 280
Score = 79.7 bits (195), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 45/92 (48%), Positives = 54/92 (58%), Gaps = 8/92 (8%)
Query: 99 GYVKVKMEGLAIGRKLDLSILGSYAELLDTLHLMF--PSTNQEDGHDRR------RRHPY 150
G+VKV M+G IGRK+DL+ SY L L LMF PS H+ Y
Sbjct: 163 GWVKVNMDGEVIGRKVDLNAHRSYKTLALALELMFTKPSIGLCASHNTNSLKLLDNSAEY 222
Query: 151 AVTYEDGEGDWMQVGDVPWEAFAKSVKRLKIL 182
+TYED +GDWM VGDVPWE F SVKRL+I+
Sbjct: 223 QLTYEDRDGDWMLVGDVPWEMFVSSVKRLRIM 254
>Os01g0231000 Similar to Auxin-responsive protein (Aux/IAA) (Fragment)
Length = 263
Score = 78.2 bits (191), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 47/121 (38%), Positives = 65/121 (53%), Gaps = 18/121 (14%)
Query: 79 LVGWPPVKCLHRRR-------------DGGCGGG--YVKVKMEGLAIGRKLDLSILGSYA 123
+VGWPP++ + D G G YVKV M+G RK+DL +Y
Sbjct: 124 VVGWPPIRSYRKNTMATNQIKSNKEDVDAKQGQGFLYVKVSMDGAPYLRKVDLKTYKNYK 183
Query: 124 ELLDTLHLMFP--STNQEDGHDRRRRHPYAVTYEDGEGDWMQVGDVPWEAFAKSVKRLKI 181
++ L MF ST +E G + ++ Y +TYED +GDWM VGDVPWE F S +RL+I
Sbjct: 184 DMSLGLEKMFIGFSTGKE-GAENQKDGEYVLTYEDKDGDWMLVGDVPWEMFTDSCRRLRI 242
Query: 182 L 182
+
Sbjct: 243 M 243
>Os03g0742900 Aux /IAA protein
Length = 236
Score = 76.6 bits (187), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 60/133 (45%), Gaps = 26/133 (19%)
Query: 76 RRKLVGWPPVKCLHRR-------------------------RDGGCGGGYVKVKMEGLAI 110
+ + VGWPPV+ R G +VKV M+G
Sbjct: 84 KAQAVGWPPVRSFRRNIMTVQSVKSKKEEEADKQQQQPAANASGSNSSAFVKVSMDGAPY 143
Query: 111 GRKLDLSILGSYAELLDTLHLMFPS-TNQEDGHDRRRRHPYAVTYEDGEGDWMQVGDVPW 169
RK+DL + SY +L L MF + T + + TYED +GDWM VGDVPW
Sbjct: 144 LRKVDLKMYNSYKDLSLALQKMFGTFTATGNNMNEVNGSDAVTTYEDKDGDWMLVGDVPW 203
Query: 170 EAFAKSVKRLKIL 182
+ F +S KRL+I+
Sbjct: 204 QMFVESCKRLRIM 216
>Os12g0601300 Similar to Auxin-responsive protein (Aux/IAA) (Fragment)
Length = 277
Score = 76.3 bits (186), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 49/140 (35%), Positives = 64/140 (45%), Gaps = 33/140 (23%)
Query: 76 RRKLVGWPPVKCLHR-----RRDGGCGGG---------------YVKVKMEGLAIGRKLD 115
+ ++VGWPPV+ + + D G +VKV M+G RK+D
Sbjct: 118 KAQVVGWPPVRSYRKNILAVQADKGKDAADGGGDKSGAGAAAAAFVKVSMDGAPYLRKVD 177
Query: 116 LSILGSYAELLDTLHLMFPS-------------TNQEDGHDRRRRHPYAVTYEDGEGDWM 162
L + SY EL L MF S N+ D Y TYED +GDWM
Sbjct: 178 LKMYKSYLELSKALEKMFSSFTIGNCGSHGVNGMNESKIADLLNGSEYVPTYEDKDGDWM 237
Query: 163 QVGDVPWEAFAKSVKRLKIL 182
VGDVPWE F +S KRL+I+
Sbjct: 238 LVGDVPWEMFVESCKRLRIM 257
>Os01g0178500 Similar to Auxin-responsive protein (Aux/IAA) (Fragment)
Length = 199
Score = 75.9 bits (185), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 42/113 (37%), Positives = 61/113 (53%), Gaps = 11/113 (9%)
Query: 78 KLVGWPPVKCLHRRRDGGCGGGYVKVKMEGLAIGRKLDLSILGSYAELLDTLHLMFPS-- 135
++VGWPPV+ R +VKV ++G RK+DL Y +LL L F S
Sbjct: 76 RVVGWPPVRSF---RKNALAAKFVKVAVDGAPYLRKVDLEAYSGYDQLLRALQDKFFSHF 132
Query: 136 TNQEDGHDRRRR------HPYAVTYEDGEGDWMQVGDVPWEAFAKSVKRLKIL 182
T ++ D R+ Y TYED +GDWM VGDVPW+ F ++ +RL+++
Sbjct: 133 TIRKFADDERKLVDAVNGTEYVPTYEDKDGDWMLVGDVPWKMFVETCQRLRLM 185
>Os06g0597000 Similar to Auxin responsive protein IAA-Re
Length = 193
Score = 75.9 bits (185), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/120 (37%), Positives = 60/120 (50%), Gaps = 13/120 (10%)
Query: 76 RRKLVGWPPVKCLHRR--RDGGCGGGYVKVKMEGLAIGRKLDLSILGSYAELLDTLHLMF 133
+ + VGWPPV+ R R+ VKV ++G RK+DL+ YA LL LH MF
Sbjct: 59 KARAVGWPPVRAYRRNALREDSARAKLVKVAVDGAPYLRKVDLAAHAGYAPLLRALHGMF 118
Query: 134 PS-----------TNQEDGHDRRRRHPYAVTYEDGEGDWMQVGDVPWEAFAKSVKRLKIL 182
S D Y TYED +GDWM VGDVPW+ F +S KR++++
Sbjct: 119 ASCLAVRGGGGGDGEGTKLVDLVTGAEYVPTYEDKDGDWMLVGDVPWKMFVESCKRIRLM 178
>Os09g0527700 Similar to Auxin-induced protein IAA4
Length = 140
Score = 74.7 bits (182), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 38/85 (44%), Positives = 54/85 (63%), Gaps = 5/85 (5%)
Query: 100 YVKVKMEGLAIGRKLDLSILGSYAELLDTLHLMF--PSTNQEDGHDRRRRHPYAVTYEDG 157
+VKV M+G RK+D++ G Y EL++ L+ MF + DG+ +AV YEDG
Sbjct: 47 FVKVSMDGTPYLRKVDVAAYGDYLELVEALNDMFYCSTIGLMDGYGEWE---HAVVYEDG 103
Query: 158 EGDWMQVGDVPWEAFAKSVKRLKIL 182
+GDWM VGDVPWE F S KR++++
Sbjct: 104 DGDWMLVGDVPWEMFVSSCKRMRVM 128
>Os07g0182400 AUX/IAA protein family protein
Length = 219
Score = 74.7 bits (182), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 47/128 (36%), Positives = 63/128 (49%), Gaps = 21/128 (16%)
Query: 76 RRKLVGWPPVKCLHRR------------RDGG---------CGGGYVKVKMEGLAIGRKL 114
+ ++VGWPPV+ R + GG GG YVKV M+G RK+
Sbjct: 86 KAQVVGWPPVRAYRRNTFHQAAAAAAATKKGGDEKQKQQQQGGGLYVKVSMDGAPYLRKV 145
Query: 115 DLSILGSYAELLDTLHLMFPSTNQEDGHDRRRRHPYAVTYEDGEGDWMQVGDVPWEAFAK 174
DL + Y EL + L L+F D +A+ YED +GD M VGDVPWE F
Sbjct: 146 DLKMCKGYRELREALDLLFTKCFSATASDGCSDGQFAIAYEDKDGDLMLVGDVPWEMFIS 205
Query: 175 SVKRLKIL 182
S K+L+I+
Sbjct: 206 SCKKLRIM 213
>Os02g0723400 AUX/IAA protein family protein
Length = 205
Score = 73.6 bits (179), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 43/90 (47%), Positives = 51/90 (56%), Gaps = 8/90 (8%)
Query: 100 YVKVKMEGLAIGRKLDLSILGSYAELLDTLHLMF-PSTNQEDGHD-------RRRRHPYA 151
+VKV MEG+ IGRKLDL L Y L+ L MF S H + + +
Sbjct: 105 FVKVYMEGVPIGRKLDLLPLDGYKGLVARLASMFRASITYHHCHRQFAVVGMKTNKVHHV 164
Query: 152 VTYEDGEGDWMQVGDVPWEAFAKSVKRLKI 181
+TYED EGDWM GDVPWE F SVKRL+I
Sbjct: 165 LTYEDQEGDWMMAGDVPWELFLTSVKRLRI 194
>Os12g0601400 Similar to Auxin-responsive protein (Aux/IAA) (Fragment)
Length = 197
Score = 73.2 bits (178), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 48/132 (36%), Positives = 65/132 (49%), Gaps = 27/132 (20%)
Query: 78 KLVGWPPVK-----CLH--------------------RRRD-GGCGGGYVKVKMEGLAIG 111
++VGWPPV+ CL ++ D G GG +VKV M+G
Sbjct: 53 QVVGWPPVRSYRKSCLQPTTTTTKSKPPPAAAAAETQQKEDVAGAGGLFVKVSMDGAPYL 112
Query: 112 RKLDLSILGSYAELLDTLHLMFPSTNQEDGHDRR-RRHPYAVTYEDGEGDWMQVGDVPWE 170
RK+DL + Y EL + L MF + D +AVTYED +GD M VGDVP+E
Sbjct: 113 RKIDLKVYKGYRELREALEAMFLCFSGGAAADAAVNPSDFAVTYEDKDGDLMLVGDVPFE 172
Query: 171 AFAKSVKRLKIL 182
F + KRL+I+
Sbjct: 173 MFISTCKRLRIM 184
>Os08g0109400 AUX/IAA protein family protein
Length = 246
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/148 (35%), Positives = 62/148 (41%), Gaps = 48/148 (32%)
Query: 78 KLVGWPPVKCLHRR-------------------RDGGCGGG------------YVKVKME 106
+LVGWPPV+ + D G G +VKV +E
Sbjct: 92 QLVGWPPVRAFRKNLSTPKPADADDLMNKVKLCSDEGHGSRCAAQERRSSSTMFVKVNLE 151
Query: 107 GLAIGRKLDLSILGSYAELLDTLHLMFPS-------------TNQEDGHDRRRRHPYAVT 153
G A+GRK+DL SY L L MF E+G +R Y +
Sbjct: 152 GYAVGRKIDLKAHRSYDSLSQALQSMFHGFLSDGIATRDNELQQMEEGSKKR----YVLV 207
Query: 154 YEDGEGDWMQVGDVPWEAFAKSVKRLKI 181
YED EGD M VGDVPWE F SVKRL I
Sbjct: 208 YEDNEGDRMLVGDVPWELFIASVKRLYI 235
>Os05g0559400 Similar to IAA11 (Fragment)
Length = 281
Score = 71.2 bits (173), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 62/135 (45%), Gaps = 30/135 (22%)
Query: 78 KLVGWPPVKCLHRR-----------RDGG---CGGGYVKVKMEGLAIGRKLDLSILGSYA 123
++VGWPPV+ + D G G YVKV M+G RK+DL SY
Sbjct: 127 QVVGWPPVRSYRKNTLAASATKTKGEDQGKSEVGCCYVKVSMDGAPYLRKVDLKTYSSYE 186
Query: 124 ELLDTLHLMFPS--TNQEDGHDRRRR--------------HPYAVTYEDGEGDWMQVGDV 167
+L L MF T + H +R Y +TYED + DWM VGD+
Sbjct: 187 DLSLALEKMFSCFITGRSSSHKTSKRDRLTDGSRADALKDQEYVLTYEDKDADWMLVGDL 246
Query: 168 PWEAFAKSVKRLKIL 182
PW+ F S ++L+I+
Sbjct: 247 PWDLFTTSCRKLRIM 261
>Os01g0675700 Similar to Auxin-responsive protein IAA14 (Indoleacetic
acid-induced protein 14) (SOLITARY-ROOT protein)
Length = 271
Score = 69.7 bits (169), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 64/135 (47%), Gaps = 30/135 (22%)
Query: 78 KLVGWPPVKCLHRR-----------RDGGCGGG---YVKVKMEGLAIGRKLDLSILGSYA 123
++VGWPPV+ + D G G YVKV M+G RK+DL + SY
Sbjct: 117 QVVGWPPVRNYRKNTLAASASKGKGEDKGTAEGGPLYVKVSMDGAPYLRKVDLKMYSSYE 176
Query: 124 ELLDTLHLMFP-----------STNQE-----DGHDRRRRHPYAVTYEDGEGDWMQVGDV 167
+L L MF S+N++ D + Y +TYED + DWM VGD+
Sbjct: 177 DLSMALEKMFSCFITGQSGLRKSSNRDRLTNGSKADALQDQEYVLTYEDKDADWMLVGDL 236
Query: 168 PWEAFAKSVKRLKIL 182
PW+ F ++LKI+
Sbjct: 237 PWDLFTTICRKLKIM 251
>Os05g0178600 Similar to Auxin-responsive protein (Aux/IAA) (Fragment)
Length = 212
Score = 67.4 bits (163), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 64/121 (52%), Gaps = 14/121 (11%)
Query: 76 RRKLVGWPPVKCLHRRRDGGCGGG------YVKVKMEGLAIGRKLDLSILGSYAELLDTL 129
+ ++VGWPPV+ + +VKV ++G RK+DL Y +LL L
Sbjct: 79 KARVVGWPPVRAFRKNALAALAAASSSKAKFVKVAVDGAPYLRKVDLEAYRGYDQLLAAL 138
Query: 130 HLMFPS--TNQEDGHDRRRR------HPYAVTYEDGEGDWMQVGDVPWEAFAKSVKRLKI 181
F S T ++ G++ + + Y TYED +GDWM VGDVPW+ F ++ +RL++
Sbjct: 139 QDKFFSHFTIRKLGNEEMKLVDAVSGNEYVPTYEDKDGDWMLVGDVPWKMFVETCQRLRL 198
Query: 182 L 182
+
Sbjct: 199 M 199
>Os01g0741900 Similar to Auxin-responsive protein IAA26 (Indoleacetic
acid-induced protein 26) (Phytochrome-associated protein
1)
Length = 335
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 63/144 (43%), Gaps = 40/144 (27%)
Query: 79 LVGWPPVKCLHR--------------RRDGGCG--------GGYVKVKMEGLAIGRKLDL 116
+VGWPP++ R + D VK+ M+G+ IGRK+DL
Sbjct: 176 VVGWPPIRSFRRNLASSSSSKHSPEPQNDNANAKVTLTCKKNPLVKINMDGIPIGRKIDL 235
Query: 117 SILGSYAELLDTLHLMF--------PSTNQE---DGHDRRRRHP-------YAVTYEDGE 158
+ SY L + +F TN + G D + + Y + YED E
Sbjct: 236 AAYNSYDGLSSAVKQLFHGFLQAQKDQTNAQIAQQGADDKIFYQLLDGSGEYTLVYEDSE 295
Query: 159 GDWMQVGDVPWEAFAKSVKRLKIL 182
GD M VGDVPW+ F + KRL++L
Sbjct: 296 GDRMLVGDVPWKVFVSTAKRLRVL 319
>Os01g0190300 Similar to Auxin-responsive protein IAA26 (Indoleacetic
acid-induced protein 26) (Phytochrome-associated protein
1)
Length = 238
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 59/141 (41%), Gaps = 40/141 (28%)
Query: 82 WPPVKCLHRR---------------------------RDGGCGGG-YVKVKMEGLAIGRK 113
WPPV+ R +DGG G +VK+ M+G+ IGRK
Sbjct: 74 WPPVRSFRRNLASSSSSSSKQAPPPPSSSPQNGDKASKDGGAEKGMFVKINMDGVPIGRK 133
Query: 114 LDLSILGSYAELLDTLHLMFPSTNQEDGHDRRRRHP------------YAVTYEDGEGDW 161
+DL+ G YA+L + +F Y + YED EGD
Sbjct: 134 VDLAAYGGYAQLSAAVDKLFRGLLAAQSAAADGEADAAAAGEMVGGGEYTLVYEDDEGDR 193
Query: 162 MQVGDVPWEAFAKSVKRLKIL 182
M VGDVPW+ F + KRL++L
Sbjct: 194 MLVGDVPWQMFIATAKRLRVL 214
>Os03g0633800 Similar to IAA6 (Fragment)
Length = 226
Score = 65.1 bits (157), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/87 (40%), Positives = 51/87 (58%), Gaps = 4/87 (4%)
Query: 97 GGGYVKVKMEGLAIGRKLDLSILGSYAELLDTLHLMFPS-TNQEDGHDRRRRHPYAVTYE 155
GG VKV M+G RK+DL + Y EL + L MF + DG + +A+TY+
Sbjct: 127 GGSLVKVSMDGAPYLRKIDLRMYKGYRELREALEAMFVCFSGAADGANPSE---FAITYQ 183
Query: 156 DGEGDWMQVGDVPWEAFAKSVKRLKIL 182
D +GD M VGDVP++ F + K+L+I+
Sbjct: 184 DKDGDLMLVGDVPFDMFTSTCKKLRIM 210
>Os06g0335500 AUX/IAA protein family protein
Length = 266
Score = 64.7 bits (156), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 46/138 (33%), Positives = 62/138 (44%), Gaps = 34/138 (24%)
Query: 79 LVGWPPVK------------CLHRRRDG------GCGGGYVKVKMEGLAIGRKLDLSILG 120
+VGWPP++ L + DG G YVKV M+G RK+DL +
Sbjct: 109 VVGWPPIRSYRKNTMAMSQPALKGKDDGEAKQAPASGCLYVKVSMDGAPYLRKVDLKMYK 168
Query: 121 SYAELLDTLHLMFP-------STNQEDGHD---------RRRRHPYAVTYEDGEGDWMQV 164
+Y EL L MF +N + G D + +TYED + DWM V
Sbjct: 169 NYKELSLALEKMFSCFTVGHGESNGKSGRDGLSDCRLMDLKNGTELVLTYEDKDEDWMLV 228
Query: 165 GDVPWEAFAKSVKRLKIL 182
GDVPW F S +RL+I+
Sbjct: 229 GDVPWRMFTDSCRRLRIM 246
>Os03g0797800 AUX/IAA protein family protein
Length = 197
Score = 63.9 bits (154), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 46/130 (35%), Positives = 61/130 (46%), Gaps = 29/130 (22%)
Query: 78 KLVGWPPVKCLHR-------------------------RRDGGCGGGYVKVKMEGLAIGR 112
++VGWPPV R R++ G GG YVKV M+G R
Sbjct: 66 QVVGWPPVGSYRRSTFQSSSSSTAAAAKGKGGGETDQGRKNKG-GGLYVKVSMDGAPYLR 124
Query: 113 KLDLSILGSYAELLDTLHLMFPSTNQEDGHDRRRRHPYAVTYEDGEGDWMQVGDVPWEAF 172
K+DL + G Y EL D L +F + +AV YED +GD M GDVPW+ F
Sbjct: 125 KVDLRMYGGYRELRDALDALFGCFSA---DASASAAHFAVAYEDKDGDLMLAGDVPWDMF 181
Query: 173 AKSVKRLKIL 182
S K+L+I+
Sbjct: 182 ISSCKKLRIM 191
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.141 0.442
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,600,949
Number of extensions: 219591
Number of successful extensions: 764
Number of sequences better than 1.0e-10: 23
Number of HSP's gapped: 741
Number of HSP's successfully gapped: 23
Length of query: 183
Length of database: 17,035,801
Length adjustment: 95
Effective length of query: 88
Effective length of database: 12,075,471
Effective search space: 1062641448
Effective search space used: 1062641448
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 153 (63.5 bits)