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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0601300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Auxin-responsive protein (Aux/IAA) (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.85 (0.0431) R2 : 0.439
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.1 (0.0988) R2dC : 0.154 R2C : 0.014
β3 : 2.11 (0.199) R2dE : 0.209 R2E : -0.291
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 1.61 (0.107) R2dN8 : 0.599 R2N8 : 0.0785
σ : 0.758
deviance : 264.93
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_____
C
peak time of C : 21.7
E
wheather : humidity
threshold : 90
memory length : 4412
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 4.08
open length of G : 0.2

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
262.19 0.761 4.85 -0.157 1.12 2.12 1.22 0.25 1.63 21.6 90.07 4419 3.83 0.482
260.97 0.752 4.85 -0.121 1.09 2.14 1.21 -- 1.63 21.6 90.08 4417 3.92 0.4
264.18 0.757 4.85 -0.168 1.09 2.08 -- 0.13 1.61 21.8 90 4412 4.08 0.199
264.17 0.757 4.85 -0.167 1.1 2.11 -- -- 1.61 21.7 90 4412 4.08 0.2
336.69 0.855 4.82 -0.154 -- 2.12 -- 0.364 1.62 -- 90.07 4412 4.1 0.2
320.57 0.839 5 0.217 1.09 -- 1.24 -- 0.97 22.3 -- -- -- --
326.72 0.846 5 0.168 1.09 -- -- -- 0.967 22.2 -- -- -- --
336.73 0.855 4.82 -0.15 -- 2.11 -- -- 1.63 -- 90.07 4412 4.1 0.198
264.93 0.758 4.85 -- 1.1 2.11 -- -- 1.61 21.7 90 4412 4.08 0.2
398.79 0.933 4.97 0.184 -- -- -- -- 0.97 -- -- -- -- --
327.46 0.846 5 -- 1.09 -- -- -- 0.949 22.3 -- -- -- --
337.29 0.855 4.82 -- -- 2.07 -- -- 1.63 -- 90.07 4412 4.09 0.186
399.69 0.933 4.97 -- -- -- -- -- 0.95 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 265.65 wind 3 43200 < th dose dependent rect. 9 1
3 267.25 wind 3 43200 < th dose dependent rect. 8 4
5 267.79 wind 3 43200 > th dose independent rect. 9 5
6 268.61 wind 1 43200 > th dose dependent rect. 9 6
7 268.99 wind 1 43200 > th dose dependent rect. 8 8
8 269.00 wind 3 43200 < th dose independent rect. 9 5
10 269.10 wind 9 43200 < th dose dependent rect. 9 6
19 269.54 wind 9 43200 < th dose dependent rect. 8 8
23 269.85 humidity 80 43200 < th dose dependent rect. 21 2
39 270.72 wind 1 43200 > th dose dependent rect. 11 3
40 270.75 wind 9 43200 < th dose dependent rect. 11 3
52 271.04 temperature 10 270 > th dose dependent rect. 13 16
63 271.47 wind 1 43200 > th dose independent rect. 8 3
64 271.48 wind 1 43200 < th dose dependent rect. 24 2
88 272.09 wind 9 43200 > th dose dependent rect. 10 5
106 272.50 wind 5 43200 < th dose independent rect. 10 7
122 272.76 wind 5 43200 < th dose independent rect. 11 5
129 272.96 wind 3 43200 > th dose independent rect. 11 2
158 273.50 wind 1 43200 > th dose dependent sin 0 NA
160 273.52 wind 3 43200 < th dose independent rect. 9 1
182 273.82 wind 7 43200 > th dose dependent rect. 6 9
184 273.83 wind 9 43200 > th dose independent rect. 7 8
191 273.90 wind 9 43200 > th dose independent rect. 8 6
201 274.03 humidity 80 43200 < th dose independent rect. 21 4
209 274.12 wind 9 43200 < th dose dependent sin 0 NA
225 274.30 wind 9 43200 < th dose independent rect. 6 9
272 274.71 wind 3 43200 > th dose independent rect. 9 1
314 275.12 wind 9 43200 > th dose independent rect. 2 13
328 275.25 wind 9 43200 < th dose independent rect. 2 13
329 275.25 wind 9 43200 > th dose independent rect. 24 15
372 275.50 humidity 80 43200 > th dose independent rect. 21 5
377 275.56 radiation 30 14400 < th dose independent rect. 16 9
379 275.57 humidity 80 43200 > th dose independent rect. 21 8
387 275.60 humidity 80 43200 < th dose independent rect. 24 1
390 275.61 wind 5 43200 > th dose independent rect. 15 1
391 275.61 radiation 30 14400 < th dose independent rect. 16 12
409 275.69 humidity 80 43200 > th dose independent rect. 21 2
423 275.78 humidity 80 43200 > th dose independent rect. 24 1
437 275.89 radiation 10 14400 > th dose independent rect. 5 1
463 275.97 wind 9 43200 > th dose independent rect. 18 22
469 276.02 temperature 30 90 < th dose dependent rect. 18 9
528 276.26 radiation 30 14400 < th dose independent rect. 16 7
529 276.26 wind 3 43200 > th dose independent rect. 3 14
541 276.32 wind 5 43200 < th dose independent rect. 15 1
550 276.37 wind 5 43200 < th dose independent sin 22 NA
591 276.54 wind 7 43200 > th dose dependent sin 2 NA
600 276.58 wind 3 43200 > th dose independent sin 1 NA
658 276.79 radiation 30 14400 < th dose independent rect. 16 1
689 276.90 wind 1 43200 > th dose dependent rect. 8 20
694 276.93 humidity 80 43200 > th dose independent rect. 4 1
697 276.94 temperature 30 10 < th dose dependent rect. 19 9
705 276.96 radiation 30 14400 < th dose independent rect. 16 3
775 277.16 wind 1 43200 > th dose dependent rect. 19 22
776 277.17 wind 5 43200 > th dose independent sin 22 NA
796 277.23 wind 9 43200 < th dose independent rect. 18 21
814 277.28 wind 9 43200 < th dose dependent rect. 8 20
819 277.30 humidity 80 43200 < th dose dependent rect. 4 1
829 277.32 wind 3 43200 > th dose independent rect. 19 22
833 277.33 humidity 80 43200 < th dose independent rect. 23 6
917 277.59 humidity 80 43200 > th dose independent rect. 24 5
951 277.68 radiation 40 1440 < th dose dependent rect. 18 10
960 277.71 wind 9 43200 < th dose dependent rect. 19 22
971 277.74 wind 3 43200 < th dose independent sin 2 NA