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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0633800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to IAA6 (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.52 (0.0398) R2 : 0.458
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.09 (0.114) R2dC : 0.144 R2C : 0.224
β3 : 1.26 (0.159) R2dE : 0.0951 R2E : 0.197
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.77 (0.0838) R2dN8 : 0.13 R2N8 : 0.106
σ : 0.747
deviance : 256.96
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_____
C
peak time of C : 20.7
E
wheather : temperature
threshold : 25.51
memory length : 755
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
232.9 0.717 3.67 -1.89 0.948 2.26 -0.00136 -8.36 0.488 21.2 26.41 756 -- --
243.96 0.727 3.56 -0.766 1.01 1.41 -0.403 -- 0.591 21.1 24.45 727 -- --
232.84 0.711 3.67 -1.87 0.942 2.27 -- -8.36 0.49 21.3 26.4 741 -- --
244.53 0.728 3.55 -0.722 1.03 1.42 -- -- 0.625 20.7 24.53 769 -- --
268.26 0.763 3.68 -2.08 -- 2.77 -- -7.39 0.249 -- 24.7 705 -- --
286.74 0.794 3.53 -0.398 1.53 -- -0.252 -- 0.764 20.6 -- -- -- --
286.94 0.793 3.53 -0.39 1.53 -- -- -- 0.764 20.6 -- -- -- --
286.56 0.788 3.54 -0.852 -- 2.16 -- -- 0.543 -- 24.4 705 -- --
256.96 0.747 3.52 -- 1.09 1.26 -- -- 0.77 20.7 25.51 755 -- --
419.27 0.957 3.49 -0.395 -- -- -- -- 0.75 -- -- -- -- --
290.95 0.798 3.52 -- 1.54 -- -- -- 0.807 20.6 -- -- -- --
305.06 0.813 3.51 -- -- 1.99 -- -- 0.664 -- 24.53 691 -- --
423.39 0.96 3.48 -- -- -- -- -- 0.794 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 232.26 temperature 25 720 > th dose dependent rect. 7 13
5 232.70 temperature 25 720 > th dose dependent rect. 3 17
20 233.17 temperature 25 720 > th dose dependent rect. 10 9
25 233.23 temperature 25 720 > th dose dependent sin 22 NA
55 233.89 temperature 30 720 > th dose independent rect. 13 6
75 234.01 temperature 30 720 < th dose independent rect. 11 9
101 234.23 temperature 25 720 > th dose dependent rect. 7 22
141 234.57 temperature 25 720 > th dose dependent rect. 18 23
150 234.70 temperature 25 720 > th dose dependent rect. 12 23
151 234.71 temperature 25 720 > th dose dependent no NA NA
159 234.91 temperature 25 720 > th dose dependent rect. 10 23
165 235.12 temperature 30 720 < th dose independent sin 20 NA
173 235.24 temperature 30 720 > th dose independent sin 17 NA
178 235.29 temperature 30 720 < th dose independent rect. 8 23
179 235.29 temperature 25 720 > th dose dependent rect. 14 23
221 235.85 temperature 30 720 < th dose independent rect. 15 23
233 236.17 temperature 30 720 < th dose independent rect. 6 23
258 236.66 temperature 30 720 < th dose independent rect. 8 15
263 236.79 radiation 1 14400 < th dose dependent rect. 3 2
272 236.95 temperature 30 720 > th dose independent rect. 13 2
291 237.00 temperature 30 720 < th dose independent no NA NA
300 237.29 temperature 30 720 > th dose independent rect. 17 22
301 237.32 temperature 30 720 > th dose independent no NA NA
482 239.18 temperature 30 720 < th dose independent rect. 11 16
533 239.89 temperature 30 720 < th dose independent rect. 2 23
549 240.15 temperature 30 720 < th dose independent rect. 11 23
551 240.16 temperature 30 720 < th dose independent rect. 6 17
596 240.65 wind 5 43200 > th dose dependent rect. 13 2
608 240.95 temperature 30 720 < th dose independent rect. 11 20
628 241.28 wind 5 43200 > th dose dependent rect. 11 5
659 241.74 temperature 10 720 > th dose dependent rect. 10 9
671 241.85 wind 5 43200 > th dose independent rect. 11 4
703 242.06 temperature 10 720 > th dose dependent rect. 7 12
709 242.17 temperature 25 4320 < th dose independent rect. 7 1
713 242.22 wind 5 43200 < th dose independent rect. 11 4
718 242.26 radiation 20 43200 < th dose independent rect. 17 16
758 242.47 radiation 20 43200 < th dose independent rect. 7 1
761 242.49 radiation 20 43200 < th dose independent rect. 4 5
762 242.49 radiation 20 43200 < th dose independent rect. 1 8
764 242.50 radiation 20 43200 < th dose independent rect. 6 3
772 242.50 radiation 20 43200 < th dose independent rect. 19 14
798 242.75 temperature 25 1440 > th dose dependent rect. 18 1
800 242.77 temperature 10 720 > th dose dependent rect. 7 15
818 243.00 temperature 30 270 < th dose dependent sin 18 NA
847 243.14 temperature 25 4320 > th dose independent rect. 7 1
851 243.23 radiation 1 43200 < th dose dependent rect. 21 8
860 243.32 radiation 40 43200 < th dose independent rect. 15 20
864 243.33 radiation 10 1440 < th dose dependent rect. 18 1
896 243.58 radiation 10 1440 < th dose dependent rect. 18 11
909 243.65 radiation 40 43200 < th dose independent rect. 5 6
911 243.65 radiation 40 43200 < th dose independent rect. 2 9
913 243.65 radiation 40 43200 < th dose independent rect. 19 16
915 243.66 radiation 40 43200 < th dose independent rect. 10 1
916 243.66 radiation 40 43200 < th dose independent rect. 7 4
948 243.74 radiation 40 43200 > th dose dependent rect. 10 1
954 243.76 radiation 20 43200 < th dose independent sin 11 NA
969 243.83 temperature 25 720 > th dose dependent rect. 14 1
974 243.86 humidity 60 43200 < th dose independent rect. 11 1
979 243.90 humidity 90 43200 > th dose independent rect. 22 2