Os06g0335500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : AUX/IAA protein family protein.
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Os06g0335500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : AUX/IAA protein family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 44.66 | 0.314 | 11.8 | -0.125 | 1.02 | -0.788 | 0.441 | 0.393 | -0.136 | 23.6 | 23.96 | 589 | -- | -- |
| 44.79 | 0.312 | 11.8 | -0.0575 | 1.03 | -0.844 | 0.415 | -- | -0.106 | 23.6 | 23.41 | 571 | -- | -- |
| 45.4 | 0.314 | 11.8 | -0.0919 | 1.03 | -0.849 | -- | 0.111 | -0.122 | 23.6 | 23.29 | 539 | -- | -- |
| 45.4 | 0.314 | 11.8 | -0.08 | 1.03 | -0.88 | -- | -- | -0.112 | 23.6 | 23.14 | 540 | -- | -- |
| 98.7 | 0.463 | 11.8 | -0.365 | -- | -1.37 | -- | 0.894 | -0.22 | -- | 52.29 | 849 | -- | -- |
| 54.6 | 0.346 | 11.7 | 0.152 | 1.08 | -- | 0.356 | -- | 0.0283 | 23.4 | -- | -- | -- | -- |
| 55.15 | 0.348 | 11.7 | 0.138 | 1.08 | -- | -- | -- | 0.0269 | 23.4 | -- | -- | -- | -- |
| 97.78 | 0.461 | 11.8 | -0.238 | -- | -1.41 | -- | -- | -0.252 | -- | 28.26 | 824 | -- | -- |
| 45.55 | 0.314 | 11.8 | -- | 1.03 | -0.844 | -- | -- | -0.101 | 23.6 | 23.17 | 540 | -- | -- |
| 128.53 | 0.53 | 11.7 | 0.166 | -- | -- | -- | -- | 0.0382 | -- | -- | -- | -- | -- |
| 55.65 | 0.349 | 11.7 | -- | 1.08 | -- | -- | -- | 0.0116 | 23.5 | -- | -- | -- | -- |
| 98.9 | 0.463 | 11.8 | -- | -- | -1.27 | -- | -- | -0.211 | -- | 28.5 | 834 | -- | -- |
| 129.26 | 0.531 | 11.7 | -- | -- | -- | -- | -- | 0.0198 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 43.90 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 5 | 6 |
| 2 | 43.96 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 6 | 4 |
| 8 | 44.35 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 22 | 20 |
| 10 | 44.39 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 21 | 18 |
| 12 | 44.40 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 17 | 19 |
| 20 | 44.44 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 7 | 1 |
| 50 | 44.60 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 4 | 1 |
| 56 | 44.62 | temperature | 25.0 | 720 | < th | dose dependent | sin | 9 | NA |
| 61 | 44.64 | temperature | 25.0 | 270 | < th | dose dependent | sin | 3 | NA |
| 89 | 44.75 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 1 | 17 |
| 104 | 44.86 | humidity | 90.0 | 43200 | < th | dose dependent | rect. | 10 | 1 |
| 105 | 44.86 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 3 | 17 |
| 115 | 44.91 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 5 | 15 |
| 117 | 44.92 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 6 | 8 |
| 118 | 44.93 | temperature | 25.0 | 720 | < th | dose dependent | no | NA | NA |
| 123 | 44.95 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 11 | 23 |
| 138 | 45.03 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 23 | 21 |
| 151 | 45.07 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 6 | 23 |
| 156 | 45.10 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 9 | 23 |
| 157 | 45.11 | wind | 7.0 | 14400 | > th | dose independent | rect. | 6 | 1 |
| 158 | 45.11 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 21 | 16 |
| 167 | 45.14 | wind | 1.0 | 43200 | < th | dose independent | rect. | 4 | 1 |
| 170 | 45.16 | wind | 5.0 | 14400 | > th | dose independent | rect. | 15 | 1 |
| 189 | 45.25 | temperature | 15.0 | 720 | > th | dose dependent | sin | 8 | NA |
| 250 | 45.44 | wind | 5.0 | 14400 | < th | dose independent | rect. | 15 | 1 |
| 288 | 45.52 | humidity | 90.0 | 43200 | < th | dose dependent | rect. | 4 | 8 |
| 299 | 45.55 | humidity | 80.0 | 43200 | < th | dose dependent | rect. | 3 | 12 |
| 351 | 45.61 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 17 | 20 |
| 359 | 45.62 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 16 | 19 |
| 388 | 45.66 | wind | 7.0 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 408 | 45.69 | humidity | 80.0 | 43200 | < th | dose dependent | sin | 4 | NA |
| 431 | 45.71 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 20 | 3 |
| 448 | 45.72 | wind | 5.0 | 43200 | < th | dose independent | rect. | 18 | 2 |
| 466 | 45.74 | wind | 7.0 | 14400 | > th | dose dependent | rect. | 6 | 1 |
| 498 | 45.77 | wind | 5.0 | 43200 | > th | dose independent | rect. | 18 | 2 |
| 500 | 45.77 | wind | 3.0 | 43200 | > th | dose dependent | rect. | 18 | 2 |
| 512 | 45.78 | wind | 7.0 | 43200 | < th | dose dependent | rect. | 14 | 1 |
| 513 | 45.78 | atmosphere | 995.0 | 4320 | > th | dose dependent | rect. | 11 | 1 |
| 514 | 45.78 | wind | 5.0 | 14400 | > th | dose dependent | rect. | 14 | 2 |
| 524 | 45.79 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 23 | 4 |
| 547 | 45.81 | temperature | 15.0 | 270 | > th | dose dependent | sin | 4 | NA |
| 576 | 45.84 | radiation | 10.0 | 4320 | < th | dose independent | rect. | 20 | 9 |
| 598 | 45.86 | wind | 9.0 | 14400 | < th | dose independent | rect. | 20 | 1 |
| 599 | 45.86 | humidity | 70.0 | 43200 | > th | dose independent | rect. | 1 | 16 |
| 600 | 45.86 | wind | 7.0 | 43200 | > th | dose dependent | rect. | 18 | 1 |
| 622 | 45.88 | humidity | 70.0 | 43200 | > th | dose independent | rect. | 2 | 12 |
| 644 | 45.90 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 23 | 10 |
| 688 | 45.94 | radiation | 1.0 | 4320 | > th | dose independent | rect. | 4 | 1 |
| 699 | 45.94 | humidity | 70.0 | 43200 | > th | dose independent | rect. | 19 | 22 |
| 702 | 45.94 | radiation | 1.0 | 4320 | > th | dose dependent | rect. | 4 | 1 |
| 709 | 45.94 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 14 | 7 |
| 721 | 45.95 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 6 | 9 |
| 726 | 45.95 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 14 | 7 |
| 737 | 45.96 | humidity | 70.0 | 43200 | > th | dose independent | sin | 5 | NA |
| 738 | 45.96 | humidity | 70.0 | 43200 | < th | dose independent | rect. | 24 | 17 |
| 755 | 45.97 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 7 | 5 |
| 765 | 45.98 | wind | 5.0 | 14400 | < th | dose independent | rect. | 11 | 6 |
| 776 | 45.98 | atmosphere | 995.0 | 14400 | < th | dose dependent | rect. | 5 | 11 |
| 791 | 45.99 | atmosphere | 1015.0 | 4320 | < th | dose dependent | rect. | 11 | 1 |
| 805 | 46.00 | wind | 5.0 | 14400 | > th | dose independent | rect. | 11 | 6 |
| 806 | 46.00 | radiation | 1.0 | 270 | < th | dose independent | rect. | 6 | 8 |
| 823 | 46.01 | humidity | 70.0 | 43200 | > th | dose independent | rect. | 19 | 19 |
| 824 | 46.01 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 14 | 2 |
| 836 | 46.02 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 7 | 7 |
| 851 | 46.02 | humidity | 80.0 | 43200 | < th | dose dependent | rect. | 9 | 22 |
| 854 | 46.03 | atmosphere | 995.0 | 14400 | < th | dose independent | rect. | 5 | 11 |
| 870 | 46.03 | humidity | 80.0 | 43200 | < th | dose dependent | rect. | 2 | 20 |
| 877 | 46.04 | humidity | 70.0 | 43200 | < th | dose independent | sin | 5 | NA |
| 909 | 46.05 | wind | 9.0 | 14400 | > th | dose independent | rect. | 20 | 1 |
| 910 | 46.05 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 939 | 46.06 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 5 | 11 |
| 947 | 46.06 | humidity | 80.0 | 43200 | < th | dose dependent | no | NA | NA |