Os01g0231000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Auxin-responsive protein (Aux/IAA) (Fragment).
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Os01g0231000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Auxin-responsive protein (Aux/IAA) (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 31.81 | 0.265 | 12.7 | -1.42 | 0.158 | 1.08 | -0.507 | -5.3 | 0.271 | 22.6 | 32.15 | 1032 | -- | -- |
| 32.63 | 0.266 | 12.6 | -0.64 | 0.172 | 0.483 | -0.537 | -- | 0.265 | 22.3 | 33 | 981 | -- | -- |
| 32.65 | 0.266 | 12.7 | -1.44 | 0.171 | 1.09 | -- | -5.59 | 0.268 | 0.0475 | 32.1 | 1029 | -- | -- |
| 33.55 | 0.27 | 12.6 | -0.633 | 0.163 | 0.475 | -- | -- | 0.267 | 23.8 | 32.2 | 1003 | -- | -- |
| 34.41 | 0.273 | 12.7 | -1.43 | -- | 1.12 | -- | -5.53 | 0.276 | -- | 31.9 | 1026 | -- | -- |
| 42.7 | 0.306 | 12.6 | -0.539 | 0.237 | -- | -0.326 | -- | 0.191 | 23.5 | -- | -- | -- | -- |
| 43.11 | 0.307 | 12.6 | -0.527 | 0.24 | -- | -- | -- | 0.191 | 24 | -- | -- | -- | -- |
| 35.27 | 0.277 | 12.6 | -0.632 | -- | 0.508 | -- | -- | 0.276 | -- | 32.09 | 1007 | -- | -- |
| 43.55 | 0.307 | 12.6 | -- | 0.177 | 0.397 | -- | -- | 0.316 | 0.19 | 33.1 | 968 | -- | -- |
| 46.73 | 0.319 | 12.6 | -0.519 | -- | -- | -- | -- | 0.195 | -- | -- | -- | -- | -- |
| 50.42 | 0.332 | 12.6 | -- | 0.233 | -- | -- | -- | 0.25 | 23.9 | -- | -- | -- | -- |
| 45.37 | 0.314 | 12.6 | -- | -- | 0.441 | -- | -- | 0.326 | -- | 33.4 | 967 | -- | -- |
| 53.84 | 0.342 | 12.6 | -- | -- | -- | -- | -- | 0.252 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 30.01 | humidity | 80 | 720 | < th | dose dependent | rect. | 15 | 6 |
| 2 | 30.07 | humidity | 70 | 720 | > th | dose independent | rect. | 16 | 4 |
| 11 | 30.29 | humidity | 50 | 720 | > th | dose dependent | rect. | 16 | 5 |
| 20 | 30.50 | humidity | 50 | 720 | > th | dose dependent | rect. | 17 | 2 |
| 22 | 30.53 | humidity | 70 | 720 | < th | dose independent | sin | 13 | NA |
| 27 | 30.58 | humidity | 80 | 720 | < th | dose dependent | rect. | 15 | 17 |
| 36 | 30.68 | humidity | 70 | 720 | < th | dose independent | rect. | 15 | 5 |
| 70 | 30.78 | humidity | 80 | 720 | < th | dose dependent | sin | 14 | NA |
| 81 | 30.96 | humidity | 70 | 720 | > th | dose independent | rect. | 16 | 14 |
| 165 | 31.21 | temperature | 25 | 720 | > th | dose dependent | rect. | 14 | 9 |
| 168 | 31.23 | temperature | 25 | 720 | > th | dose dependent | rect. | 15 | 7 |
| 226 | 31.47 | humidity | 70 | 720 | > th | dose independent | sin | 13 | NA |
| 227 | 31.47 | temperature | 25 | 720 | > th | dose dependent | rect. | 15 | 17 |
| 274 | 31.62 | temperature | 25 | 720 | > th | dose dependent | sin | 15 | NA |
| 282 | 31.67 | humidity | 70 | 720 | > th | dose independent | rect. | 16 | 10 |
| 332 | 31.86 | temperature | 30 | 720 | < th | dose independent | rect. | 17 | 9 |
| 350 | 31.92 | temperature | 30 | 720 | < th | dose independent | rect. | 17 | 2 |
| 354 | 31.94 | temperature | 30 | 720 | < th | dose independent | sin | 12 | NA |
| 446 | 32.17 | humidity | 50 | 1440 | > th | dose independent | rect. | 15 | 2 |
| 454 | 32.20 | humidity | 50 | 1440 | > th | dose independent | rect. | 15 | 20 |
| 499 | 32.27 | humidity | 50 | 1440 | < th | dose independent | rect. | 15 | 20 |
| 506 | 32.29 | temperature | 30 | 720 | < th | dose independent | rect. | 16 | 14 |
| 509 | 32.30 | humidity | 50 | 1440 | > th | dose independent | rect. | 15 | 12 |
| 514 | 32.31 | humidity | 50 | 1440 | > th | dose independent | rect. | 15 | 15 |
| 530 | 32.34 | temperature | 30 | 720 | > th | dose independent | rect. | 17 | 2 |
| 548 | 32.35 | temperature | 30 | 720 | < th | dose independent | rect. | 16 | 4 |
| 812 | 32.73 | radiation | 10 | 14400 | > th | dose independent | rect. | 5 | 1 |
| 834 | 32.75 | radiation | 1 | 720 | > th | dose independent | sin | 16 | NA |
| 878 | 32.77 | humidity | 50 | 720 | > th | dose dependent | rect. | 9 | 12 |
| 966 | 32.84 | wind | 7 | 43200 | > th | dose dependent | rect. | 9 | 11 |