FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0633500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Auxin-responsive protein (Aux/IAA) (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.12 (0.0414) R2 : 0.336
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -2 (0.135) R2dE : 0.37 R2E : 0.324
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.216 (0.0921) R2dN8 : 0.0119 R2N8 : -0.0335
σ : 0.765
deviance : 269.64
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 21.2
memory length : 3677
response mode : > th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
259.65 0.757 3.06 -0.0363 0.0567 -1.56 0.748 1.75 0.247 9.54 21.6 3610 -- --
265.51 0.759 3.12 -0.47 0.0719 -1.64 0.476 -- 0.12 7.41 21.47 3638 -- --
261.67 0.753 3.06 -0.0235 0.0572 -1.59 -- 1.65 0.253 7.77 21.5 3630 -- --
266.1 0.76 3.13 -0.449 0.0597 -1.74 -- -- 0.135 7.32 21.5 3673 -- --
261.86 0.754 3.06 -0.0281 -- -1.57 -- 1.65 0.246 -- 21.5 3618 -- --
341.35 0.866 3.26 -1.48 0.135 -- 0.668 -- -0.446 9.59 -- -- -- --
342.98 0.867 3.26 -1.45 0.133 -- -- -- -0.444 10.3 -- -- -- --
266.29 0.76 3.13 -0.451 -- -1.74 -- -- 0.135 -- 21.49 3659 -- --
269.52 0.765 3.11 -- 0.0433 -1.99 -- -- 0.22 5.88 21.1 3677 -- --
344.06 0.867 3.27 -1.45 -- -- -- -- -0.444 -- -- -- -- --
398.39 0.934 3.23 -- 0.143 -- -- -- -0.282 11.1 -- -- -- --
269.64 0.765 3.12 -- -- -2 -- -- 0.216 -- 21.2 3677 -- --
399.68 0.933 3.23 -- -- -- -- -- -0.283 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 240.08 wind 9.0 43200 > th dose dependent rect. 22 3
3 240.81 wind 9.0 43200 > th dose dependent rect. 22 5
4 241.17 atmosphere 1015.0 43200 < th dose independent rect. 19 1
6 241.76 wind 7.0 43200 > th dose independent rect. 7 1
7 242.03 wind 7.0 43200 > th dose independent rect. 5 4
9 242.38 wind 7.0 43200 < th dose independent rect. 7 1
10 242.76 precipitation 0.1 43200 < th dose independent rect. 6 1
11 242.76 precipitation 0.1 43200 < th dose dependent rect. 6 1
12 242.91 wind 9.0 43200 > th dose independent rect. 8 7
13 243.13 precipitation 0.1 43200 > th dose independent rect. 6 1
14 243.13 precipitation 0.1 43200 > th dose dependent rect. 6 1
15 243.45 wind 9.0 43200 < th dose independent rect. 8 7
16 243.49 wind 7.0 43200 > th dose dependent rect. 10 2
17 243.50 wind 7.0 43200 < th dose independent rect. 5 3
19 243.64 wind 9.0 43200 > th dose independent rect. 9 5
22 243.77 wind 7.0 43200 > th dose dependent rect. 9 5
24 243.80 wind 9.0 43200 < th dose independent rect. 9 5
25 244.00 wind 7.0 43200 > th dose dependent rect. 5 3
26 244.24 wind 9.0 43200 < th dose independent rect. 5 10
29 244.34 wind 7.0 43200 > th dose dependent rect. 5 6
31 244.41 wind 9.0 43200 > th dose independent rect. 5 10
36 244.72 wind 9.0 43200 > th dose independent rect. 23 2
37 244.72 wind 7.0 43200 > th dose dependent rect. 8 7
44 244.98 wind 9.0 43200 < th dose independent rect. 10 2
54 245.37 radiation 30.0 14400 > th dose dependent rect. 7 1
71 245.41 radiation 30.0 14400 > th dose independent rect. 7 1
87 245.51 wind 9.0 43200 > th dose independent rect. 18 17
107 246.04 wind 7.0 43200 > th dose dependent rect. 24 11
113 246.15 wind 9.0 43200 > th dose independent rect. 10 2
116 246.17 wind 7.0 43200 > th dose independent rect. 7 5
118 246.23 wind 9.0 43200 < th dose independent rect. 24 15
122 246.26 wind 9.0 43200 > th dose independent rect. 24 15
123 246.31 wind 9.0 43200 > th dose dependent rect. 19 16
125 246.34 wind 9.0 43200 < th dose independent rect. 18 17
137 246.53 wind 9.0 43200 < th dose independent rect. 22 17
144 246.61 wind 9.0 43200 > th dose dependent rect. 17 18
146 246.63 wind 7.0 43200 < th dose independent rect. 7 5
148 246.66 wind 9.0 43200 > th dose independent rect. 18 21
158 246.76 wind 9.0 43200 > th dose dependent rect. 19 14
161 246.82 wind 9.0 43200 > th dose independent rect. 22 17
169 246.93 wind 9.0 43200 < th dose independent rect. 22 3
172 246.94 wind 9.0 43200 < th dose independent rect. 18 21
187 247.11 wind 7.0 43200 > th dose dependent rect. 22 17
232 247.64 wind 9.0 43200 > th dose dependent sin 10 NA
235 247.65 radiation 40.0 14400 < th dose independent rect. 21 11
244 247.77 radiation 40.0 14400 < th dose independent rect. 7 1
268 248.01 radiation 40.0 14400 < th dose independent rect. 18 14
273 248.05 wind 7.0 43200 > th dose dependent sin 2 NA
284 248.14 wind 9.0 43200 > th dose independent sin 1 NA
334 248.48 wind 9.0 43200 < th dose independent sin 2 NA
339 248.54 wind 9.0 43200 < th dose independent rect. 24 11
376 248.86 wind 9.0 43200 > th dose independent rect. 24 11
384 248.92 wind 9.0 43200 < th dose independent rect. 22 13
409 249.16 wind 9.0 43200 > th dose independent rect. 22 13
421 249.23 wind 9.0 43200 < th dose independent rect. 2 9
430 249.29 atmosphere 995.0 43200 > th dose independent rect. 8 6
436 249.34 temperature 20.0 1440 < th dose independent rect. 22 1
448 249.45 wind 9.0 43200 > th dose independent rect. 2 9
451 249.48 humidity 90.0 43200 > th dose independent rect. 10 1
484 249.79 humidity 80.0 43200 > th dose dependent rect. 11 1
486 249.84 wind 9.0 43200 > th dose independent rect. 5 15
497 249.97 atmosphere 995.0 43200 < th dose dependent rect. 7 9
541 250.36 atmosphere 1015.0 43200 > th dose independent rect. 19 1
548 250.43 humidity 80.0 43200 > th dose dependent rect. 5 7
550 250.45 atmosphere 1015.0 43200 > th dose independent rect. 18 3
555 250.48 humidity 90.0 43200 < th dose independent rect. 10 1
559 250.50 atmosphere 995.0 43200 < th dose dependent rect. 9 6
574 250.59 wind 9.0 43200 > th dose dependent rect. 10 10
580 250.62 wind 9.0 43200 > th dose independent rect. 5 20
604 250.77 wind 9.0 43200 > th dose independent rect. 23 21
613 250.84 atmosphere 1015.0 43200 < th dose independent rect. 13 7
637 251.00 wind 9.0 43200 > th dose dependent rect. 10 15
638 251.01 atmosphere 1015.0 43200 < th dose independent rect. 15 6
653 251.06 wind 9.0 43200 > th dose dependent rect. 14 21
658 251.09 wind 9.0 43200 > th dose independent sin 9 NA
662 251.10 humidity 80.0 43200 > th dose dependent rect. 7 5
666 251.13 radiation 1.0 43200 > th dose independent rect. 10 2
684 251.22 wind 9.0 43200 < th dose independent rect. 5 15
685 251.23 radiation 1.0 43200 < th dose independent rect. 10 2
687 251.23 humidity 90.0 43200 < th dose independent rect. 5 8
688 251.23 radiation 1.0 43200 < th dose dependent rect. 10 2
701 251.28 temperature 15.0 43200 < th dose dependent rect. 4 3
778 251.53 temperature 15.0 43200 < th dose dependent rect. 2 14
780 251.54 wind 9.0 43200 < th dose independent sin 8 NA
787 251.55 atmosphere 1015.0 43200 > th dose independent rect. 13 8
789 251.56 temperature 20.0 1440 > th dose independent rect. 22 1
803 251.59 atmosphere 995.0 43200 < th dose independent rect. 7 7
842 251.69 wind 9.0 43200 > th dose independent rect. 13 23
848 251.70 wind 9.0 43200 < th dose independent rect. 22 22
869 251.75 wind 9.0 43200 < th dose independent rect. 5 20
929 251.88 atmosphere 1015.0 43200 > th dose dependent rect. 12 3
960 251.96 wind 9.0 43200 > th dose independent no NA NA
968 251.97 wind 7.0 43200 > th dose dependent rect. 5 22
978 252.01 temperature 15.0 43200 < th dose dependent sin 4 NA
980 252.01 atmosphere 1015.0 43200 > th dose dependent rect. 11 6