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Os01g0741900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Auxin-responsive protein IAA26 (Indoleacetic acid-induced protein 26) (Phytochrome-associated protein 1).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.93 (0.0308) R2 : 0.815
β1 : -1.69 (0.112) R2dD : 0.0959 R2D : 0.0938
β2 : 1.18 (0.155) R2dC : 0.106 R2C : 0.41
β3 : 1.59 (0.126) R2dE : 0.293 R2E : 0.589
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.345 (0.0657) R2dN8 : 0.0152 R2N8 : 0.0223
σ : 0.573
deviance : 151.35
__
_____
C
peak time of C : 0.963
E
wheather : radiation
threshold : 11.51
memory length : 12
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
149.47 0.574 9.92 -1.68 1.2 1.57 -0.0157 0.588 0.347 0.948 11.06 12 -- --
149.89 0.57 9.93 -1.67 1.2 1.58 0.634 -- 0.343 0.908 11.38 12 -- --
149.53 0.57 9.93 -1.68 1.21 1.56 -- 0.572 0.356 0.908 11.27 14 -- --
151.35 0.573 9.93 -1.69 1.18 1.59 -- -- 0.345 0.963 11.51 12 -- --
169.21 0.606 9.9 -1.66 -- 2.43 -- 0.535 0.393 -- 11.37 12 -- --
188.8 0.644 9.97 -1.66 2.93 -- 0.728 -- 0.283 0.283 -- -- -- --
191.09 0.647 9.98 -1.68 2.93 -- -- -- 0.279 0.296 -- -- -- --
167.68 0.603 9.88 -1.68 -- 2.46 -- -- 0.47 -- 11.99 48 -- --
225.06 0.699 9.89 -- 1.18 1.6 -- -- 0.536 0.743 13.8 14 -- --
729.73 1.26 9.92 -1.59 -- -- -- -- 0.325 -- -- -- -- --
265.91 0.763 9.93 -- 2.9 -- -- -- 0.467 0.265 -- -- -- --
240.28 0.722 9.84 -- -- 2.49 -- -- 0.654 -- 14.07 47 -- --
796.23 1.32 9.88 -- -- -- -- -- 0.501 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 148.91 radiation 1e+01 10 < th dose dependent rect. 1 23
2 148.93 radiation 1e+00 30 > th dose independent sin 23 NA
3 148.99 radiation 1e+00 30 < th dose independent sin 23 NA
5 149.81 radiation 1e+01 10 < th dose dependent rect. 13 23
6 149.82 radiation 1e+01 10 < th dose dependent no NA NA
7 149.85 radiation 1e+01 10 < th dose dependent rect. 11 23
8 149.86 radiation 1e+01 10 < th dose dependent rect. 15 23
9 150.04 radiation 1e+01 10 < th dose dependent rect. 9 23
10 150.44 radiation 1e+01 10 < th dose dependent rect. 17 23
16 150.74 radiation 2e+01 90 < th dose dependent rect. 17 22
29 151.56 radiation 1e+01 30 < th dose dependent sin 22 NA
30 151.58 radiation 1e+01 10 < th dose dependent rect. 3 23
70 153.80 radiation 1e+01 10 < th dose dependent rect. 7 23
91 154.69 wind 1e+00 43200 > th dose independent rect. 4 2
97 154.83 radiation 1e+00 30 < th dose independent rect. 5 15
99 154.89 radiation 1e+01 10 < th dose dependent rect. 3 19
124 155.43 radiation 2e+01 90 < th dose dependent rect. 9 12
135 155.77 radiation 2e+01 90 < th dose dependent rect. 17 18
147 156.01 radiation 1e+00 30 < th dose independent rect. 3 19
150 156.09 radiation 1e+01 30 < th dose dependent rect. 3 17
154 156.14 radiation 1e+00 30 < th dose independent rect. 3 17
159 156.35 radiation 1e+01 10 < th dose dependent rect. 7 15
181 156.74 radiation 1e+01 30 < th dose dependent rect. 21 23
220 157.45 radiation 1e+00 30 < th dose independent rect. 5 17
222 157.50 radiation 2e+01 90 < th dose dependent rect. 23 23
227 157.58 radiation 1e+01 90 < th dose independent rect. 9 12
240 157.74 wind 1e+00 43200 < th dose independent rect. 4 2
308 158.62 wind 1e+00 43200 > th dose independent rect. 2 4
325 158.76 humidity 9e+01 90 < th dose dependent rect. 20 21
381 159.37 wind 5e+00 14400 < th dose dependent rect. 12 3
428 159.70 wind 1e+00 43200 < th dose independent rect. 2 3
447 159.81 radiation 2e+01 270 < th dose independent rect. 24 20
460 159.95 atmosphere 1e+03 10 > th dose independent rect. 3 19
466 159.98 wind 5e+00 14400 < th dose independent rect. 14 1
468 159.98 wind 1e+00 43200 < th dose dependent rect. 2 5
473 160.00 radiation 1e+01 90 > th dose independent rect. 9 23
485 160.05 atmosphere 1e+03 270 > th dose independent rect. 1 19
487 160.07 radiation 4e+01 270 < th dose independent rect. 9 11
488 160.09 wind 1e+00 43200 < th dose independent rect. 2 5
493 160.13 radiation 1e+01 90 < th dose independent rect. 1 22
505 160.23 radiation 4e+01 270 < th dose independent rect. 24 21
523 160.35 radiation 1e+00 90 > th dose independent rect. 5 12
540 160.38 radiation 4e+01 270 < th dose dependent rect. 24 20
546 160.44 radiation 4e+01 270 < th dose independent rect. 1 19
550 160.46 wind 5e+00 14400 > th dose independent rect. 14 1
558 160.52 humidity 8e+01 43200 > th dose dependent rect. 13 1
568 160.55 radiation 2e+01 270 < th dose independent rect. 1 18
574 160.60 precipitation 1e-01 90 < th dose independent rect. 19 23
577 160.60 precipitation 1e-01 90 < th dose dependent rect. 19 23
578 160.61 radiation 1e+00 14400 < th dose dependent rect. 19 2
603 160.76 atmosphere 1e+03 30 > th dose independent rect. 3 17
620 160.83 radiation 1e+01 90 < th dose independent rect. 17 22
633 160.88 radiation 1e+01 90 > th dose independent rect. 11 23
661 161.02 humidity 8e+01 43200 > th dose independent rect. 20 21
675 161.08 radiation 1e+00 90 > th dose dependent rect. 11 23
688 161.19 wind 1e+00 43200 > th dose independent rect. 14 1
693 161.22 precipitation 1e-01 270 < th dose independent rect. 19 21
695 161.22 precipitation 1e-01 270 < th dose dependent rect. 19 21
708 161.29 wind 3e+00 14400 > th dose independent rect. 12 3
709 161.31 radiation 1e+00 30 < th dose independent rect. 13 7
711 161.31 humidity 8e+01 90 < th dose independent rect. 6 11
723 161.33 radiation 1e+00 10 < th dose dependent rect. 13 7
732 161.35 humidity 8e+01 90 < th dose independent rect. 21 20
738 161.39 wind 1e+00 43200 < th dose dependent rect. 2 3
766 161.47 humidity 8e+01 43200 > th dose independent rect. 13 16
779 161.52 wind 5e+00 1440 > th dose dependent rect. 14 16
815 161.63 wind 1e+00 14400 > th dose dependent rect. 13 2
826 161.66 radiation 1e+01 90 > th dose independent no NA NA
911 161.68 wind 3e+00 43200 < th dose dependent rect. 4 1
953 161.81 radiation 1e+00 30 < th dose independent rect. 15 5
983 161.91 radiation 1e+00 10 < th dose dependent rect. 15 5
997 162.01 humidity 9e+01 14400 > th dose independent rect. 5 3